Wall clock time and date at job start Tue Mar 31 2020 15:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30849 * 1 3 3 Si 1.86797 * 120.00349 * 2 1 4 4 H 1.48495 * 109.47375 * 270.00438 * 3 2 1 5 5 H 1.48499 * 109.46986 * 30.00499 * 3 2 1 6 6 H 1.48503 * 109.47041 * 150.00105 * 3 2 1 7 7 C 1.39922 * 119.99672 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99819 * 163.90056 * 7 2 1 9 9 C 1.41318 * 120.00188 * 343.90030 * 7 2 1 10 10 C 1.40534 * 120.20518 * 334.22076 * 9 7 2 11 11 C 1.38668 * 119.65686 * 180.02562 * 10 9 7 12 12 C 1.48380 * 119.96804 * 179.97438 * 11 10 9 13 13 C 1.39374 * 120.09783 * 58.53692 * 12 11 10 14 14 C 1.37954 * 119.90804 * 180.02562 * 13 12 11 15 15 C 1.38572 * 120.09296 * 359.97438 * 14 13 12 16 16 F 1.35097 * 119.90044 * 180.02562 * 15 14 13 17 17 C 1.38528 * 120.19418 * 0.02562 * 15 14 13 18 18 C 1.38001 * 120.09482 * 359.71423 * 17 15 14 19 19 C 1.50697 * 120.04987 * 180.30379 * 18 17 15 20 20 F 1.39901 * 109.47229 * 353.44194 * 19 18 17 21 21 F 1.39897 * 109.46917 * 113.44134 * 19 18 17 22 22 F 1.39901 * 109.47337 * 233.43857 * 19 18 17 23 23 C 1.39830 * 120.07043 * 359.97438 * 11 10 9 24 24 C 1.38230 * 120.41838 * 0.02562 * 23 11 10 25 25 C 1.38072 * 120.34874 * 0.02562 * 24 23 11 26 26 F 1.35101 * 120.04027 * 180.02562 * 25 24 23 27 27 H 0.97003 * 120.00037 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.17242 * 359.97438 * 10 9 7 29 29 H 1.07996 * 120.04465 * 0.02562 * 13 12 11 30 30 H 1.07999 * 119.95189 * 179.97438 * 14 13 12 31 31 H 1.07998 * 119.95466 * 180.02562 * 17 15 14 32 32 H 1.07998 * 119.79079 * 179.74921 * 23 11 10 33 33 H 1.07998 * 119.82605 * 179.97438 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.4900 2.0464 -1.4000 5 1 1.4401 2.6526 0.7001 6 1 3.5402 1.4400 0.7000 7 6 2.0080 -1.2118 -0.0005 8 1 3.0563 -1.2301 -0.2599 9 6 1.3430 -2.4118 0.3383 10 6 0.2086 -2.3816 1.1672 11 6 -0.4349 -3.5660 1.4929 12 6 -1.6329 -3.5422 2.3681 13 6 -2.7557 -2.8049 1.9962 14 6 -3.8672 -2.7852 2.8131 15 6 -3.8686 -3.4975 4.0017 16 9 -4.9594 -3.4758 4.7984 17 6 -2.7549 -4.2317 4.3753 18 6 -1.6407 -4.2613 3.5615 19 6 -0.4323 -5.0658 3.9657 20 9 -0.6168 -5.5670 5.2587 21 9 -0.2606 -6.1295 3.0733 22 9 0.7024 -4.2479 3.9401 23 6 0.0440 -4.7828 0.9975 24 6 1.1595 -4.8159 0.1819 25 6 1.8142 -3.6472 -0.1525 26 9 2.9036 -3.6868 -0.9505 27 1 -0.4850 0.8401 0.0004 28 1 -0.1597 -1.4410 1.5493 29 1 -2.7555 -2.2499 1.0698 30 1 -4.7374 -2.2137 2.5257 31 1 -2.7604 -4.7857 5.3023 32 1 -0.4583 -5.7029 1.2574 33 1 1.5214 -5.7610 -0.1950 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241125344.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:08 Heat of formation + Delta-G solvation = -197.640464 kcal Electronic energy + Delta-G solvation = -27878.050661 eV Core-core repulsion = 23089.316838 eV Total energy + Delta-G solvation = -4788.733823 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.86341 -48.91280 -47.44119 -47.33701 -47.20825 -39.32549 -37.17608 -33.97167 -32.04178 -31.61392 -29.91022 -28.03003 -25.83017 -25.50612 -22.98814 -22.18412 -21.36073 -20.24371 -18.54985 -18.19786 -18.13875 -17.53652 -16.31527 -16.18829 -16.03245 -15.78005 -15.60823 -15.22922 -14.67293 -14.33404 -14.11863 -14.09665 -13.86731 -13.82541 -13.46793 -13.39906 -13.32706 -13.23705 -12.77311 -12.50647 -12.39690 -12.18865 -11.84478 -11.68373 -11.29851 -11.14825 -11.11103 -10.82502 -10.52906 -10.13632 -9.66774 -9.37773 -9.29945 -8.66051 -7.72616 -7.38723 -6.95067 -4.55300 0.85873 1.10658 2.42177 2.63426 2.90582 2.98986 3.01020 3.07612 3.44441 3.81288 3.87632 4.20174 4.34136 4.45318 4.72717 4.82807 4.94258 4.95490 5.23895 5.39030 5.62696 5.80064 5.90572 5.96615 6.03175 6.19067 6.37350 6.40598 6.72976 6.77719 6.91601 7.02740 7.27852 7.43011 7.65222 7.77965 7.90280 8.33572 8.58548 8.65249 9.97812 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.012606 B = 0.005059 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.603798 B = 5532.948431 C = 6814.778002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.077 3.923 3 Si 0.913 3.087 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.450 4.450 8 H 0.084 0.916 9 C 0.083 3.917 10 C -0.107 4.107 11 C -0.083 4.083 12 C 0.036 3.964 13 C -0.080 4.080 14 C -0.121 4.121 15 C 0.078 3.922 16 F -0.139 7.139 17 C -0.111 4.111 18 C -0.159 4.159 19 C 0.514 3.486 20 F -0.187 7.187 21 F -0.167 7.167 22 F -0.162 7.162 23 C -0.203 4.203 24 C -0.121 4.121 25 C -0.017 4.017 26 F -0.161 7.161 27 H 0.284 0.716 28 H 0.131 0.869 29 H 0.151 0.849 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.116 0.884 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.813 -4.066 6.511 10.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.142 4.142 3 Si 0.737 3.263 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.479 4.479 8 H 0.102 0.898 9 C 0.080 3.920 10 C -0.126 4.126 11 C -0.083 4.083 12 C 0.036 3.964 13 C -0.097 4.097 14 C -0.139 4.139 15 C 0.059 3.941 16 F -0.118 7.118 17 C -0.130 4.130 18 C -0.161 4.161 19 C 0.460 3.540 20 F -0.168 7.168 21 F -0.148 7.148 22 F -0.143 7.143 23 C -0.222 4.222 24 C -0.140 4.140 25 C -0.037 4.037 26 F -0.140 7.140 27 H 0.095 0.905 28 H 0.149 0.851 29 H 0.169 0.831 30 H 0.159 0.841 31 H 0.163 0.837 32 H 0.134 0.866 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.978 -3.915 6.511 10.316 hybrid contribution 0.469 0.607 0.036 0.768 sum -6.509 -3.309 6.547 9.807 Atomic orbital electron populations 1.69760 1.07585 1.29682 1.34673 1.25892 0.94839 1.01505 0.91931 0.86219 0.80683 0.79984 0.79461 1.19266 1.19898 1.18261 1.19511 0.97885 0.90596 1.39914 0.89775 1.17504 0.92585 0.91111 0.90821 1.21187 0.97331 0.95741 0.98333 1.18390 0.94664 0.94936 1.00312 1.18897 0.94481 0.91829 0.91242 1.21319 0.90595 0.97632 1.00203 1.21308 1.00213 0.99287 0.93130 1.17429 0.84152 1.01521 0.91009 1.91492 1.52046 1.95362 1.72912 1.20741 0.91569 0.99983 1.00668 1.19869 0.94314 1.03794 0.98082 1.18027 0.83773 0.78246 0.73966 1.93129 1.95337 1.88482 1.39862 1.93167 1.95927 1.58515 1.67190 1.93279 1.52956 1.72065 1.95989 1.20658 0.99993 0.95987 1.05581 1.20410 0.97121 0.95793 1.00663 1.18001 0.90179 0.94965 1.00572 1.91284 1.52998 1.97356 1.72403 0.90514 0.85121 0.83096 0.84066 0.83702 0.86596 0.87718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.64 10.94 55.55 0.61 -18.03 16 2 C 0.08 1.81 5.16 -17.34 -0.09 1.72 16 3 Si 0.91 17.86 29.59 -169.99 -5.03 12.83 16 4 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 5 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 6 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 7 C -0.45 -11.52 8.77 -37.78 -0.33 -11.86 16 8 H 0.08 2.15 7.74 -52.48 -0.41 1.74 16 9 C 0.08 2.11 5.57 -106.80 -0.59 1.52 16 10 C -0.11 -2.50 8.26 -38.56 -0.32 -2.82 16 11 C -0.08 -1.72 3.96 -104.97 -0.42 -2.14 16 12 C 0.04 0.63 5.34 -104.89 -0.56 0.07 16 13 C -0.08 -1.22 9.64 -39.26 -0.38 -1.60 16 14 C -0.12 -1.57 10.01 -39.56 -0.40 -1.96 16 15 C 0.08 1.05 7.30 -39.35 -0.29 0.76 16 16 F -0.14 -1.82 17.26 2.25 0.04 -1.78 16 17 C -0.11 -1.53 9.40 -39.56 -0.37 -1.90 16 18 C -0.16 -2.56 5.40 -104.30 -0.56 -3.12 16 19 C 0.51 8.50 2.79 36.00 0.10 8.60 16 20 F -0.19 -2.76 16.00 2.25 0.04 -2.72 16 21 F -0.17 -2.81 13.35 2.25 0.03 -2.78 16 22 F -0.16 -3.05 15.94 2.25 0.04 -3.01 16 23 C -0.20 -4.19 7.75 -38.99 -0.30 -4.49 16 24 C -0.12 -2.64 9.99 -39.65 -0.40 -3.04 16 25 C -0.02 -0.41 7.31 -38.58 -0.28 -0.70 16 26 F -0.16 -3.97 16.71 2.25 0.04 -3.93 16 27 H 0.28 6.04 8.30 -40.82 -0.34 5.70 16 28 H 0.13 3.14 6.19 -52.49 -0.32 2.81 16 29 H 0.15 2.31 8.06 -52.49 -0.42 1.88 16 30 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.15 1.72 7.18 -52.49 -0.38 1.34 16 32 H 0.12 2.19 5.76 -52.49 -0.30 1.88 16 33 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 307.11 15.07 4.63 4.63 Total: -1.00 -25.42 307.11 -6.61 -32.03 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -1.81 Total: 3.73 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: -5.19 Total: -20.96 kcal Atomic # 7 Polarization: -18.64 SS G_CDS: 0.61 Total: -18.03 kcal Atomic # 9 Polarization: -14.40 SS G_CDS: 0.18 Total: -14.22 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -25.42 -6.61 -32.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241125344.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.608 kcal (2) G-P(sol) polarization free energy of solvation -25.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds