Wall clock time and date at job start Tue Mar 31 2020 15:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30849 * 1 3 3 Si 1.86797 * 120.00349 * 2 1 4 4 H 1.48495 * 109.47375 * 270.00438 * 3 2 1 5 5 H 1.48499 * 109.46986 * 30.00499 * 3 2 1 6 6 H 1.48503 * 109.47041 * 150.00105 * 3 2 1 7 7 C 1.39922 * 119.99672 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99819 * 163.90056 * 7 2 1 9 9 C 1.41318 * 120.00188 * 343.90030 * 7 2 1 10 10 C 1.40534 * 120.20518 * 334.22076 * 9 7 2 11 11 C 1.38668 * 119.65686 * 180.02562 * 10 9 7 12 12 C 1.48380 * 119.96804 * 179.97438 * 11 10 9 13 13 C 1.39374 * 120.09783 * 58.53692 * 12 11 10 14 14 C 1.37954 * 119.90804 * 180.02562 * 13 12 11 15 15 C 1.38572 * 120.09296 * 359.97438 * 14 13 12 16 16 F 1.35097 * 119.90044 * 180.02562 * 15 14 13 17 17 C 1.38528 * 120.19418 * 0.02562 * 15 14 13 18 18 C 1.38001 * 120.09482 * 359.71423 * 17 15 14 19 19 C 1.50697 * 120.04987 * 180.30379 * 18 17 15 20 20 F 1.39901 * 109.47229 * 353.44194 * 19 18 17 21 21 F 1.39897 * 109.46917 * 113.44134 * 19 18 17 22 22 F 1.39901 * 109.47337 * 233.43857 * 19 18 17 23 23 C 1.39830 * 120.07043 * 359.97438 * 11 10 9 24 24 C 1.38230 * 120.41838 * 0.02562 * 23 11 10 25 25 C 1.38072 * 120.34874 * 0.02562 * 24 23 11 26 26 F 1.35101 * 120.04027 * 180.02562 * 25 24 23 27 27 H 0.97003 * 120.00037 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.17242 * 359.97438 * 10 9 7 29 29 H 1.07996 * 120.04465 * 0.02562 * 13 12 11 30 30 H 1.07999 * 119.95189 * 179.97438 * 14 13 12 31 31 H 1.07998 * 119.95466 * 180.02562 * 17 15 14 32 32 H 1.07998 * 119.79079 * 179.74921 * 23 11 10 33 33 H 1.07998 * 119.82605 * 179.97438 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.4900 2.0464 -1.4000 5 1 1.4401 2.6526 0.7001 6 1 3.5402 1.4400 0.7000 7 6 2.0080 -1.2118 -0.0005 8 1 3.0563 -1.2301 -0.2599 9 6 1.3430 -2.4118 0.3383 10 6 0.2086 -2.3816 1.1672 11 6 -0.4349 -3.5660 1.4929 12 6 -1.6329 -3.5422 2.3681 13 6 -2.7557 -2.8049 1.9962 14 6 -3.8672 -2.7852 2.8131 15 6 -3.8686 -3.4975 4.0017 16 9 -4.9594 -3.4758 4.7984 17 6 -2.7549 -4.2317 4.3753 18 6 -1.6407 -4.2613 3.5615 19 6 -0.4323 -5.0658 3.9657 20 9 -0.6168 -5.5670 5.2587 21 9 -0.2606 -6.1295 3.0733 22 9 0.7024 -4.2479 3.9401 23 6 0.0440 -4.7828 0.9975 24 6 1.1595 -4.8159 0.1819 25 6 1.8142 -3.6472 -0.1525 26 9 2.9036 -3.6868 -0.9505 27 1 -0.4850 0.8401 0.0004 28 1 -0.1597 -1.4410 1.5493 29 1 -2.7555 -2.2499 1.0698 30 1 -4.7374 -2.2137 2.5257 31 1 -2.7604 -4.7857 5.3023 32 1 -0.4583 -5.7029 1.2574 33 1 1.5214 -5.7610 -0.1950 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241125344.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:08 Heat of formation + Delta-G solvation = -206.914810 kcal Electronic energy + Delta-G solvation = -27878.452827 eV Core-core repulsion = 23089.316838 eV Total energy + Delta-G solvation = -4789.135989 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.18285 -49.97652 -49.23143 -48.71683 -48.59775 -40.62934 -38.81130 -35.72836 -33.30646 -32.97407 -31.69316 -29.52020 -27.33827 -27.07308 -24.33530 -23.55854 -22.99143 -21.81758 -19.82640 -19.51063 -19.49017 -19.18991 -18.03538 -17.45448 -17.40164 -17.11737 -16.85773 -16.66732 -16.35308 -15.99693 -15.60895 -15.51776 -15.22193 -15.18369 -14.89662 -14.76399 -14.65422 -14.46332 -14.40758 -13.98209 -13.83341 -13.55833 -13.40866 -13.37075 -12.92196 -12.76672 -12.57048 -12.23186 -12.10434 -11.84954 -11.42167 -11.12094 -10.43580 -9.95738 -9.52729 -9.08697 -8.70142 -6.43638 -0.35106 -0.07129 0.72455 0.88455 1.38000 1.45126 1.51909 1.62166 2.18442 2.23973 2.60148 2.62562 2.96302 3.24900 3.39062 3.43927 3.59236 3.75777 3.91628 4.00914 4.16638 4.32003 4.40086 4.67485 4.76062 4.81667 4.94110 5.01828 5.07347 5.19925 5.30816 5.48099 5.65386 5.68914 5.89520 5.96088 6.11603 6.48153 6.74933 6.82204 8.24202 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.012606 B = 0.005059 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.603798 B = 5532.948431 C = 6814.778002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.044 3.956 3 Si 0.978 3.022 4 H -0.263 1.263 5 H -0.257 1.257 6 H -0.265 1.265 7 C -0.492 4.492 8 H 0.068 0.932 9 C 0.056 3.944 10 C -0.122 4.122 11 C -0.068 4.068 12 C 0.007 3.993 13 C -0.082 4.082 14 C -0.104 4.104 15 C 0.089 3.911 16 F -0.132 7.132 17 C -0.103 4.103 18 C -0.162 4.162 19 C 0.513 3.487 20 F -0.174 7.174 21 F -0.170 7.170 22 F -0.180 7.180 23 C -0.198 4.198 24 C -0.120 4.120 25 C -0.054 4.054 26 F -0.170 7.170 27 H 0.294 0.706 28 H 0.121 0.879 29 H 0.147 0.853 30 H 0.175 0.825 31 H 0.168 0.832 32 H 0.139 0.861 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.021 -3.977 7.844 12.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.173 4.173 3 Si 0.799 3.201 4 H -0.188 1.188 5 H -0.181 1.181 6 H -0.189 1.189 7 C -0.521 4.521 8 H 0.087 0.913 9 C 0.053 3.947 10 C -0.141 4.141 11 C -0.069 4.069 12 C 0.006 3.994 13 C -0.100 4.100 14 C -0.122 4.122 15 C 0.070 3.930 16 F -0.110 7.110 17 C -0.122 4.122 18 C -0.164 4.164 19 C 0.459 3.541 20 F -0.156 7.156 21 F -0.151 7.151 22 F -0.162 7.162 23 C -0.217 4.217 24 C -0.139 4.139 25 C -0.074 4.074 26 F -0.149 7.149 27 H 0.106 0.894 28 H 0.139 0.861 29 H 0.165 0.835 30 H 0.192 0.808 31 H 0.185 0.815 32 H 0.157 0.843 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.204 -3.847 7.847 12.692 hybrid contribution 1.000 0.466 -0.283 1.139 sum -8.204 -3.381 7.565 11.660 Atomic orbital electron populations 1.69767 1.08423 1.31077 1.34154 1.26588 0.95685 1.03931 0.91104 0.85249 0.79173 0.76102 0.79587 1.18764 1.18134 1.18892 1.19636 0.97606 0.92213 1.42612 0.91341 1.17861 0.93644 0.91603 0.91545 1.21109 0.97515 0.96467 0.99042 1.18616 0.95030 0.93936 0.99283 1.18779 0.94156 0.94443 0.91992 1.21282 0.90796 0.97319 1.00634 1.21542 1.00163 0.98390 0.92132 1.17453 0.84013 1.00681 0.90882 1.91526 1.51608 1.95207 1.72685 1.20928 0.90728 0.99645 1.00882 1.19776 0.94752 1.03824 0.98003 1.18127 0.83458 0.78108 0.74427 1.93148 1.95203 1.88284 1.38925 1.93142 1.95944 1.58591 1.67429 1.93247 1.54117 1.72675 1.96118 1.21005 0.99367 0.96954 1.04390 1.20714 0.97026 0.95884 1.00286 1.18326 0.91050 0.95927 1.02094 1.91240 1.53489 1.97429 1.72785 0.89449 0.86125 0.83544 0.80807 0.81495 0.84341 0.85422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.66 10.94 21.82 0.24 -38.42 16 2 C 0.04 2.11 5.16 85.25 0.44 2.55 16 3 Si 0.98 37.01 29.59 68.60 2.03 39.04 16 4 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 5 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 6 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 7 C -0.49 -26.45 8.77 23.44 0.21 -26.24 16 8 H 0.07 3.73 7.74 -2.91 -0.02 3.71 16 9 C 0.06 3.00 5.57 -21.28 -0.12 2.88 16 10 C -0.12 -5.90 8.26 22.93 0.19 -5.71 16 11 C -0.07 -2.85 3.96 -20.09 -0.08 -2.93 16 12 C 0.01 0.23 5.34 -20.04 -0.11 0.12 16 13 C -0.08 -2.38 9.64 22.48 0.22 -2.16 16 14 C -0.10 -2.33 10.01 22.28 0.22 -2.11 16 15 C 0.09 2.04 7.30 22.42 0.16 2.20 16 16 F -0.13 -2.87 17.26 44.97 0.78 -2.09 16 17 C -0.10 -2.51 9.40 22.28 0.21 -2.30 16 18 C -0.16 -4.89 5.40 -19.66 -0.11 -4.99 16 19 C 0.51 16.22 2.79 71.23 0.20 16.42 16 20 F -0.17 -4.77 16.00 44.97 0.72 -4.05 16 21 F -0.17 -5.46 13.35 44.97 0.60 -4.86 16 22 F -0.18 -6.77 15.94 44.97 0.72 -6.05 16 23 C -0.20 -8.11 7.75 22.65 0.18 -7.94 16 24 C -0.12 -5.31 9.99 22.23 0.22 -5.09 16 25 C -0.05 -2.75 7.31 22.92 0.17 -2.58 16 26 F -0.17 -8.78 16.71 44.97 0.75 -8.03 16 27 H 0.29 12.49 8.30 -92.71 -0.77 11.72 16 28 H 0.12 5.99 6.19 -2.91 -0.02 5.97 16 29 H 0.15 4.35 8.06 -2.91 -0.02 4.33 16 30 H 0.17 2.77 8.06 -2.91 -0.02 2.75 16 31 H 0.17 3.30 7.18 -2.91 -0.02 3.28 16 32 H 0.14 5.01 5.76 -2.91 -0.02 5.00 16 33 H 0.13 4.90 8.06 -2.91 -0.02 4.88 16 Total: -1.00 -56.44 307.11 9.04 -47.40 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 1.20 Total: 14.94 kcal Atomic # 6 Polarization: -39.89 SS G_CDS: 2.00 Total: -37.89 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.24 Total: -38.42 kcal Atomic # 9 Polarization: -28.64 SS G_CDS: 3.56 Total: -25.08 kcal Atomic # 14 Polarization: 37.01 SS G_CDS: 2.03 Total: 39.04 kcal Total: -56.44 9.04 -47.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241125344.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.512 kcal (2) G-P(sol) polarization free energy of solvation -56.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds