Wall clock time and date at job start Tue Mar 31 2020 15:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30862 * 1 3 3 Si 1.86796 * 120.00645 * 2 1 4 4 H 1.48495 * 109.47199 * 240.00584 * 3 2 1 5 5 H 1.48500 * 109.46860 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47346 * 120.00011 * 3 2 1 7 7 C 1.39899 * 119.99363 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99945 * 197.93201 * 7 2 1 9 9 C 1.41336 * 120.00457 * 17.92798 * 7 2 1 10 10 C 1.40848 * 120.16112 * 204.55055 * 9 7 2 11 11 C 1.37559 * 120.02535 * 179.97438 * 10 9 7 12 12 C 1.38752 * 120.34833 * 0.25694 * 11 10 9 13 13 F 1.35106 * 119.84393 * 179.72130 * 12 11 10 14 14 C 1.40004 * 120.31377 * 359.44657 * 12 11 10 15 15 C 1.48367 * 120.01539 * 180.27365 * 14 12 11 16 16 C 1.39373 * 120.09939 * 245.02013 * 15 14 12 17 17 C 1.37953 * 119.90344 * 179.72128 * 16 15 14 18 18 C 1.38577 * 120.09674 * 0.53653 * 17 16 15 19 19 F 1.35102 * 119.90343 * 179.74146 * 18 17 16 20 20 C 1.38521 * 120.19134 * 359.76155 * 18 17 16 21 21 C 1.37996 * 120.09948 * 359.95991 * 20 18 17 22 22 C 1.50700 * 120.05134 * 180.02562 * 21 20 18 23 23 F 1.39891 * 109.47064 * 0.02562 * 22 21 20 24 24 F 1.39899 * 109.47116 * 120.02381 * 22 21 20 25 25 F 1.39903 * 109.47118 * 240.01876 * 22 21 20 26 26 C 1.38668 * 119.96455 * 0.57494 * 14 12 11 27 27 H 0.97003 * 119.99526 * 359.97438 * 1 2 3 28 28 H 1.08001 * 119.98433 * 359.97438 * 10 9 7 29 29 H 1.07996 * 119.82596 * 179.97438 * 11 10 9 30 30 H 1.08005 * 120.04687 * 359.97438 * 16 15 14 31 31 H 1.08007 * 119.95474 * 180.25319 * 17 16 15 32 32 H 1.07999 * 119.95378 * 179.97438 * 20 18 17 33 33 H 1.08000 * 120.16810 * 179.72907 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2428 1.6176 0.0000 4 1 3.0964 1.6962 -1.2125 5 1 1.2779 2.7464 -0.0006 6 1 3.0965 1.6962 1.2124 7 6 2.0080 -1.2116 -0.0005 8 1 3.0486 -1.2346 0.2874 9 6 1.3527 -2.4057 -0.3778 10 6 1.8257 -3.6491 0.0849 11 6 1.1855 -4.8095 -0.2836 12 6 0.0760 -4.7643 -1.1155 13 9 -0.5416 -5.9107 -1.4756 14 6 -0.4102 -3.5358 -1.5788 15 6 -1.6008 -3.4947 -2.4632 16 6 -1.4812 -3.0415 -3.7757 17 6 -2.5898 -3.0103 -4.5962 18 6 -3.8231 -3.4184 -4.1138 19 9 -4.9072 -3.3814 -4.9192 20 6 -3.9477 -3.8637 -2.8080 21 6 -2.8430 -3.9036 -1.9820 22 6 -2.9796 -4.3888 -0.5619 23 9 -4.3109 -4.7412 -0.3156 24 9 -2.1586 -5.5050 -0.3694 25 9 -2.5962 -3.3707 0.3177 26 6 0.2254 -2.3580 -1.2159 27 1 -0.4849 0.8401 0.0004 28 1 2.6914 -3.6914 0.7293 29 1 1.5512 -5.7612 0.0727 30 1 -0.5213 -2.7189 -4.1512 31 1 -2.4973 -2.6631 -5.6148 32 1 -4.9108 -4.1804 -2.4359 33 1 -0.1442 -1.4089 -1.5750 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241125565.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:22 Heat of formation + Delta-G solvation = -195.880967 kcal Electronic energy + Delta-G solvation = -28428.972162 eV Core-core repulsion = 23640.314637 eV Total energy + Delta-G solvation = -4788.657525 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.64694 -48.88096 -47.64782 -47.13611 -46.90369 -39.21214 -37.26832 -33.80636 -32.10410 -31.78229 -29.50750 -28.35561 -25.76029 -25.20805 -23.11863 -22.04036 -21.25689 -20.37571 -18.44833 -18.04640 -17.92656 -17.54896 -16.34660 -16.21003 -15.97166 -15.64559 -15.55791 -15.33872 -14.86693 -14.62582 -14.20147 -13.84697 -13.75662 -13.43742 -13.37630 -13.24831 -13.15534 -12.93478 -12.57486 -12.43373 -12.37694 -12.00515 -11.88904 -11.80693 -11.32367 -11.19952 -11.03821 -10.94895 -10.43472 -10.11765 -9.72827 -9.30582 -9.25026 -8.65233 -7.71904 -7.46310 -6.95003 -4.52691 0.92568 1.14565 2.40698 2.63703 2.98140 2.98810 3.03962 3.07309 3.46826 3.79697 4.00829 4.28628 4.33275 4.52403 4.87798 4.92439 4.93689 5.00537 5.29122 5.42426 5.62299 5.68113 5.93811 5.97466 5.99331 6.16290 6.41090 6.53621 6.75273 6.80413 6.88299 7.01775 7.20375 7.49149 7.58487 7.78436 7.98087 8.33074 8.63846 8.67065 9.99144 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.012832 B = 0.005309 C = 0.004577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.515041 B = 5272.687403 C = 6115.921825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.454 4.454 8 H 0.083 0.917 9 C 0.100 3.900 10 C -0.194 4.194 11 C -0.117 4.117 12 C -0.018 4.018 13 F -0.160 7.160 14 C -0.100 4.100 15 C 0.036 3.964 16 C -0.083 4.083 17 C -0.122 4.122 18 C 0.081 3.919 19 F -0.139 7.139 20 C -0.110 4.110 21 C -0.146 4.146 22 C 0.503 3.497 23 F -0.189 7.189 24 F -0.155 7.155 25 F -0.161 7.161 26 C -0.108 4.108 27 H 0.285 0.715 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.146 0.854 31 H 0.142 0.858 32 H 0.146 0.854 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.822 -2.846 -5.510 7.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.483 4.483 8 H 0.101 0.899 9 C 0.097 3.903 10 C -0.214 4.214 11 C -0.136 4.136 12 C -0.038 4.038 13 F -0.139 7.139 14 C -0.101 4.101 15 C 0.035 3.965 16 C -0.101 4.101 17 C -0.141 4.141 18 C 0.061 3.939 19 F -0.118 7.118 20 C -0.129 4.129 21 C -0.147 4.147 22 C 0.449 3.551 23 F -0.171 7.171 24 F -0.136 7.136 25 F -0.142 7.142 26 C -0.127 4.127 27 H 0.096 0.904 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.164 0.836 31 H 0.160 0.840 32 H 0.164 0.836 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.103 -2.728 -5.488 7.976 hybrid contribution -0.090 0.520 0.158 0.551 sum -5.194 -2.208 -5.331 7.763 Atomic orbital electron populations 1.69808 1.07556 1.29863 1.33655 1.25952 0.94781 1.01542 0.92166 0.86319 0.80158 0.79945 0.80149 1.18677 1.20216 1.18848 1.19539 0.98338 0.90954 1.39480 0.89935 1.17542 0.91124 0.92395 0.89233 1.20929 1.03282 0.91942 1.05258 1.20450 0.95743 0.98370 0.99013 1.17123 0.98450 0.80134 1.08120 1.91344 1.82352 1.48856 1.91333 1.18395 0.96222 0.93702 1.01816 1.18732 0.91673 0.92513 0.93565 1.21175 0.98987 0.98128 0.91830 1.21245 0.91147 1.00445 1.01280 1.17411 0.83716 1.04073 0.88658 1.91492 1.53188 1.94572 1.72515 1.20761 0.99369 1.00423 0.92352 1.19892 0.95034 1.06651 0.93145 1.18188 0.73323 0.76622 0.86988 1.93108 1.36223 1.92448 1.95315 1.93380 1.71243 1.53098 1.95900 1.93304 1.90758 1.59255 1.70897 1.21266 0.97448 0.95073 0.98895 0.90379 0.87746 0.87722 0.83639 0.84050 0.83615 0.85135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.84 10.96 55.54 0.61 -18.23 16 2 C 0.07 1.73 5.13 -17.34 -0.09 1.64 16 3 Si 0.91 17.28 29.60 -169.99 -5.03 12.25 16 4 H -0.26 -4.93 7.11 56.52 0.40 -4.52 16 5 H -0.28 -5.18 7.11 56.52 0.40 -4.78 16 6 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 7 C -0.45 -10.98 9.04 -37.78 -0.34 -11.32 16 8 H 0.08 1.90 7.91 -52.49 -0.41 1.48 16 9 C 0.10 2.43 5.57 -106.86 -0.60 1.83 16 10 C -0.19 -4.39 9.78 -38.84 -0.38 -4.77 16 11 C -0.12 -2.53 9.99 -39.64 -0.40 -2.93 16 12 C -0.02 -0.41 5.81 -38.73 -0.22 -0.63 16 13 F -0.16 -3.47 13.49 2.25 0.03 -3.44 16 14 C -0.10 -2.19 4.06 -104.91 -0.43 -2.62 16 15 C 0.04 0.68 4.98 -104.89 -0.52 0.16 16 16 C -0.08 -1.32 9.72 -39.26 -0.38 -1.70 16 17 C -0.12 -1.66 10.01 -39.56 -0.40 -2.06 16 18 C 0.08 1.16 7.30 -39.35 -0.29 0.87 16 19 F -0.14 -1.91 17.26 2.25 0.04 -1.88 16 20 C -0.11 -1.70 9.40 -39.57 -0.37 -2.08 16 21 C -0.15 -2.65 5.33 -104.30 -0.56 -3.21 16 22 C 0.50 9.66 2.88 36.01 0.10 9.77 16 23 F -0.19 -3.23 15.97 2.25 0.04 -3.19 16 24 F -0.16 -3.18 11.92 2.25 0.03 -3.15 16 25 F -0.16 -3.47 16.52 2.25 0.04 -3.43 16 26 C -0.11 -2.53 8.36 -38.55 -0.32 -2.86 16 27 H 0.29 6.29 8.30 -40.82 -0.34 5.95 16 28 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 29 H 0.10 2.02 8.06 -52.49 -0.42 1.59 16 30 H 0.15 2.08 8.06 -52.48 -0.42 1.66 16 31 H 0.14 1.47 8.06 -52.48 -0.42 1.05 16 32 H 0.15 1.97 7.15 -52.49 -0.38 1.59 16 33 H 0.13 3.16 6.16 -52.49 -0.32 2.84 16 LS Contribution 306.15 15.07 4.61 4.61 Total: -1.00 -25.58 306.15 -6.76 -32.34 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -1.94 Total: 4.01 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: -5.19 Total: -19.90 kcal Atomic # 7 Polarization: -18.84 SS G_CDS: 0.61 Total: -18.23 kcal Atomic # 9 Polarization: -15.26 SS G_CDS: 0.17 Total: -15.09 kcal Atomic # 14 Polarization: 17.28 SS G_CDS: -5.03 Total: 12.25 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -25.58 -6.76 -32.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241125565.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.539 kcal (2) G-P(sol) polarization free energy of solvation -25.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds