Wall clock time and date at job start Tue Mar 31 2020 15:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30862 * 1 3 3 Si 1.86796 * 120.00645 * 2 1 4 4 H 1.48495 * 109.47199 * 240.00584 * 3 2 1 5 5 H 1.48500 * 109.46860 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47346 * 120.00011 * 3 2 1 7 7 C 1.39899 * 119.99363 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99945 * 197.93201 * 7 2 1 9 9 C 1.41336 * 120.00457 * 17.92798 * 7 2 1 10 10 C 1.40848 * 120.16112 * 204.55055 * 9 7 2 11 11 C 1.37559 * 120.02535 * 179.97438 * 10 9 7 12 12 C 1.38752 * 120.34833 * 0.25694 * 11 10 9 13 13 F 1.35106 * 119.84393 * 179.72130 * 12 11 10 14 14 C 1.40004 * 120.31377 * 359.44657 * 12 11 10 15 15 C 1.48367 * 120.01539 * 180.27365 * 14 12 11 16 16 C 1.39373 * 120.09939 * 245.02013 * 15 14 12 17 17 C 1.37953 * 119.90344 * 179.72128 * 16 15 14 18 18 C 1.38577 * 120.09674 * 0.53653 * 17 16 15 19 19 F 1.35102 * 119.90343 * 179.74146 * 18 17 16 20 20 C 1.38521 * 120.19134 * 359.76155 * 18 17 16 21 21 C 1.37996 * 120.09948 * 359.95991 * 20 18 17 22 22 C 1.50700 * 120.05134 * 180.02562 * 21 20 18 23 23 F 1.39891 * 109.47064 * 0.02562 * 22 21 20 24 24 F 1.39899 * 109.47116 * 120.02381 * 22 21 20 25 25 F 1.39903 * 109.47118 * 240.01876 * 22 21 20 26 26 C 1.38668 * 119.96455 * 0.57494 * 14 12 11 27 27 H 0.97003 * 119.99526 * 359.97438 * 1 2 3 28 28 H 1.08001 * 119.98433 * 359.97438 * 10 9 7 29 29 H 1.07996 * 119.82596 * 179.97438 * 11 10 9 30 30 H 1.08005 * 120.04687 * 359.97438 * 16 15 14 31 31 H 1.08007 * 119.95474 * 180.25319 * 17 16 15 32 32 H 1.07999 * 119.95378 * 179.97438 * 20 18 17 33 33 H 1.08000 * 120.16810 * 179.72907 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2428 1.6176 0.0000 4 1 3.0964 1.6962 -1.2125 5 1 1.2779 2.7464 -0.0006 6 1 3.0965 1.6962 1.2124 7 6 2.0080 -1.2116 -0.0005 8 1 3.0486 -1.2346 0.2874 9 6 1.3527 -2.4057 -0.3778 10 6 1.8257 -3.6491 0.0849 11 6 1.1855 -4.8095 -0.2836 12 6 0.0760 -4.7643 -1.1155 13 9 -0.5416 -5.9107 -1.4756 14 6 -0.4102 -3.5358 -1.5788 15 6 -1.6008 -3.4947 -2.4632 16 6 -1.4812 -3.0415 -3.7757 17 6 -2.5898 -3.0103 -4.5962 18 6 -3.8231 -3.4184 -4.1138 19 9 -4.9072 -3.3814 -4.9192 20 6 -3.9477 -3.8637 -2.8080 21 6 -2.8430 -3.9036 -1.9820 22 6 -2.9796 -4.3888 -0.5619 23 9 -4.3109 -4.7412 -0.3156 24 9 -2.1586 -5.5050 -0.3694 25 9 -2.5962 -3.3707 0.3177 26 6 0.2254 -2.3580 -1.2159 27 1 -0.4849 0.8401 0.0004 28 1 2.6914 -3.6914 0.7293 29 1 1.5512 -5.7612 0.0727 30 1 -0.5213 -2.7189 -4.1512 31 1 -2.4973 -2.6631 -5.6148 32 1 -4.9108 -4.1804 -2.4359 33 1 -0.1442 -1.4089 -1.5750 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241125565.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:21 Heat of formation + Delta-G solvation = -205.135176 kcal Electronic energy + Delta-G solvation = -28429.373455 eV Core-core repulsion = 23640.314637 eV Total energy + Delta-G solvation = -4789.058818 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.18020 -50.01493 -49.33911 -48.67305 -48.50989 -40.55872 -38.92092 -35.53518 -33.53264 -33.10927 -31.27687 -29.85284 -27.16867 -26.97435 -24.51598 -23.42869 -22.95189 -21.95551 -19.83537 -19.55533 -19.47952 -19.18106 -18.03418 -17.54929 -17.33699 -17.11778 -16.91322 -16.69537 -16.49070 -16.28673 -15.61920 -15.35966 -15.26324 -14.97153 -14.85871 -14.74475 -14.58129 -14.49876 -14.16328 -13.93098 -13.84359 -13.59715 -13.43267 -13.27076 -13.01470 -12.75889 -12.51863 -12.34516 -12.10936 -11.76940 -11.42986 -11.01326 -10.46997 -10.02818 -9.38856 -9.21278 -8.67553 -6.35221 -0.35672 -0.10347 0.71647 0.89283 1.42529 1.50135 1.54560 1.61762 2.20132 2.21282 2.58197 2.62077 2.93412 3.21285 3.40379 3.51317 3.54178 3.71574 3.86921 3.93647 4.13539 4.29794 4.35627 4.66071 4.77007 4.87131 4.92758 4.99246 5.07363 5.20568 5.26881 5.46640 5.60696 5.72999 5.81966 6.00083 6.22905 6.54534 6.85967 6.88302 8.28335 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.012832 B = 0.005309 C = 0.004577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.515041 B = 5272.687403 C = 6115.921825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.039 3.961 3 Si 0.980 3.020 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.261 1.261 7 C -0.484 4.484 8 H 0.085 0.915 9 C 0.074 3.926 10 C -0.206 4.206 11 C -0.120 4.120 12 C -0.030 4.030 13 F -0.158 7.158 14 C -0.091 4.091 15 C 0.001 3.999 16 C -0.084 4.084 17 C -0.103 4.103 18 C 0.090 3.910 19 F -0.130 7.130 20 C -0.108 4.108 21 C -0.161 4.161 22 C 0.500 3.500 23 F -0.177 7.177 24 F -0.166 7.166 25 F -0.181 7.181 26 C -0.125 4.125 27 H 0.291 0.709 28 H 0.117 0.883 29 H 0.128 0.872 30 H 0.157 0.843 31 H 0.182 0.818 32 H 0.164 0.836 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.391 -2.321 -7.104 9.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.177 4.177 3 Si 0.801 3.199 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.185 1.185 7 C -0.513 4.513 8 H 0.103 0.897 9 C 0.072 3.928 10 C -0.226 4.226 11 C -0.138 4.138 12 C -0.050 4.050 13 F -0.137 7.137 14 C -0.092 4.092 15 C 0.001 3.999 16 C -0.102 4.102 17 C -0.121 4.121 18 C 0.071 3.929 19 F -0.109 7.109 20 C -0.127 4.127 21 C -0.162 4.162 22 C 0.446 3.554 23 F -0.158 7.158 24 F -0.147 7.147 25 F -0.162 7.162 26 C -0.144 4.144 27 H 0.101 0.899 28 H 0.135 0.865 29 H 0.146 0.854 30 H 0.175 0.825 31 H 0.199 0.801 32 H 0.182 0.818 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.680 -2.226 -7.084 9.349 hybrid contribution -0.027 0.256 0.606 0.658 sum -5.707 -1.970 -6.479 8.856 Atomic orbital electron populations 1.69873 1.08943 1.30962 1.34227 1.26733 0.95396 1.04461 0.91148 0.85266 0.78793 0.75650 0.80200 1.18134 1.19550 1.18512 1.19808 0.98701 0.91907 1.40870 0.89715 1.17915 0.91850 0.93292 0.89776 1.21110 1.03930 0.91822 1.05728 1.20724 0.95442 0.99141 0.98542 1.17341 0.98724 0.80512 1.08433 1.91340 1.82352 1.48642 1.91339 1.18557 0.96576 0.92878 1.01181 1.18789 0.91013 0.95306 0.94794 1.21330 1.00476 0.97599 0.90800 1.21581 0.89714 0.98264 1.02525 1.17447 0.84224 1.03023 0.88227 1.91526 1.52845 1.94375 1.72106 1.20923 0.99216 0.99930 0.92616 1.19830 0.95701 1.07992 0.92679 1.18387 0.73569 0.75946 0.87498 1.93120 1.35101 1.92288 1.95321 1.93345 1.71771 1.53591 1.96019 1.93260 1.91061 1.60126 1.71764 1.21168 0.98154 0.95223 0.99867 0.89862 0.86537 0.85448 0.82512 0.80062 0.81838 0.86314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.89 10.96 21.82 0.24 -39.65 16 2 C 0.04 1.82 5.13 85.24 0.44 2.26 16 3 Si 0.98 35.28 29.60 68.60 2.03 37.31 16 4 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 5 H -0.27 -9.38 7.11 99.48 0.71 -8.67 16 6 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 7 C -0.48 -23.93 9.04 23.43 0.21 -23.72 16 8 H 0.08 3.98 7.91 -2.91 -0.02 3.96 16 9 C 0.07 3.72 5.57 -21.31 -0.12 3.60 16 10 C -0.21 -9.51 9.78 22.75 0.22 -9.28 16 11 C -0.12 -5.23 9.99 22.23 0.22 -5.00 16 12 C -0.03 -1.35 5.81 22.82 0.13 -1.22 16 13 F -0.16 -6.83 13.49 44.97 0.61 -6.23 16 14 C -0.09 -4.03 4.06 -20.05 -0.08 -4.12 16 15 C 0.00 0.05 4.98 -20.04 -0.10 -0.05 16 16 C -0.08 -2.52 9.72 22.48 0.22 -2.30 16 17 C -0.10 -2.43 10.01 22.28 0.22 -2.21 16 18 C 0.09 2.31 7.30 22.42 0.16 2.47 16 19 F -0.13 -3.09 17.26 44.97 0.78 -2.32 16 20 C -0.11 -3.12 9.40 22.28 0.21 -2.91 16 21 C -0.16 -5.74 5.33 -19.66 -0.10 -5.84 16 22 C 0.50 19.27 2.88 71.24 0.21 19.48 16 23 F -0.18 -5.91 15.97 44.97 0.72 -5.19 16 24 F -0.17 -6.86 11.92 44.97 0.54 -6.33 16 25 F -0.18 -8.00 16.52 44.97 0.74 -7.26 16 26 C -0.12 -6.05 8.36 22.94 0.19 -5.86 16 27 H 0.29 12.97 8.30 -92.71 -0.77 12.20 16 28 H 0.12 4.92 8.06 -2.91 -0.02 4.89 16 29 H 0.13 4.84 8.06 -2.91 -0.02 4.81 16 30 H 0.16 4.25 8.06 -2.91 -0.02 4.22 16 31 H 0.18 2.85 8.06 -2.91 -0.02 2.82 16 32 H 0.16 4.03 7.15 -2.91 -0.02 4.01 16 33 H 0.12 5.96 6.16 -2.91 -0.02 5.94 16 Total: -1.00 -55.80 306.15 8.88 -46.92 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: 1.20 Total: 17.45 kcal Atomic # 6 Polarization: -36.74 SS G_CDS: 2.03 Total: -34.70 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.24 Total: -39.65 kcal Atomic # 9 Polarization: -30.70 SS G_CDS: 3.38 Total: -27.32 kcal Atomic # 14 Polarization: 35.28 SS G_CDS: 2.03 Total: 37.31 kcal Total: -55.80 8.88 -46.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241125565.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.218 kcal (2) G-P(sol) polarization free energy of solvation -55.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds