Wall clock time and date at job start Tue Mar 31 2020 15:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30812 * 1 3 3 Si 1.86799 * 120.00221 * 2 1 4 4 H 1.48500 * 109.47229 * 239.99958 * 3 2 1 5 5 H 1.48493 * 109.46901 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46840 * 120.00148 * 3 2 1 7 7 C 1.39989 * 119.99564 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99493 * 197.96392 * 7 2 1 9 9 C 1.41012 * 120.00309 * 17.96611 * 7 2 1 10 10 C 1.40985 * 120.09967 * 24.70806 * 9 7 2 11 11 C 1.36219 * 119.92585 * 180.30299 * 10 9 7 12 12 C 1.39960 * 120.14215 * 359.44288 * 11 10 9 13 13 C 1.47913 * 119.89879 * 180.28113 * 12 11 10 14 14 C 1.39671 * 120.12091 * 64.99662 * 13 12 11 15 15 C 1.37846 * 119.88184 * 179.76489 * 14 13 12 16 16 C 1.38665 * 120.11677 * 0.51317 * 15 14 13 17 17 F 1.35108 * 119.87782 * 179.76390 * 16 15 14 18 18 C 1.38624 * 120.24300 * 359.74088 * 16 15 14 19 19 C 1.37882 * 120.11951 * 359.97438 * 18 16 15 20 20 C 1.50706 * 120.06104 * 179.97438 * 19 18 16 21 21 F 1.39898 * 109.47237 * 0.02562 * 20 19 18 22 22 F 1.39893 * 109.46974 * 120.02354 * 20 19 18 23 23 F 1.39906 * 109.46883 * 240.02327 * 20 19 18 24 24 C 1.40168 * 120.20359 * 0.55689 * 12 11 10 25 25 F 1.35097 * 119.96414 * 179.74724 * 24 12 11 26 26 C 1.36469 * 120.07206 * 359.72500 * 24 12 11 27 27 H 0.96997 * 119.99679 * 359.97438 * 1 2 3 28 28 H 1.07991 * 120.03664 * 0.02562 * 10 9 7 29 29 H 1.08004 * 119.92891 * 179.69671 * 11 10 9 30 30 H 1.08003 * 120.05527 * 0.02562 * 14 13 12 31 31 H 1.07995 * 119.94308 * 180.25508 * 15 14 13 32 32 H 1.08002 * 119.94216 * 180.02562 * 18 16 15 33 33 H 1.07995 * 120.07427 * 180.02562 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0959 1.6963 -1.2125 5 1 1.2772 2.7464 0.0006 6 1 3.0959 1.6962 1.2125 7 6 2.0080 -1.2124 0.0005 8 1 3.0485 -1.2350 0.2890 9 6 1.3545 -2.4040 -0.3756 10 6 0.2268 -2.3556 -1.2204 11 6 -0.4055 -3.5083 -1.5765 12 6 0.0688 -4.7416 -1.1150 13 6 -0.6182 -5.9905 -1.5102 14 6 -0.6309 -6.3902 -2.8484 15 6 -1.2685 -7.5575 -3.2104 16 6 -1.9056 -8.3289 -2.2503 17 9 -2.5331 -9.4697 -2.6112 18 6 -1.9007 -7.9342 -0.9215 19 6 -1.2609 -6.7714 -0.5475 20 6 -1.2569 -6.3432 0.8975 21 9 -1.9601 -7.2792 1.6633 22 9 0.0623 -6.2622 1.3561 23 9 -1.8690 -5.0906 1.0143 24 6 1.1895 -4.7964 -0.2749 25 9 1.6402 -5.9890 0.1718 26 6 1.8261 -3.6464 0.0919 27 1 -0.4849 0.8400 0.0004 28 1 -0.1380 -1.4053 -1.5811 29 1 -1.2724 -3.4709 -2.2197 30 1 -0.1384 -5.7880 -3.5975 31 1 -1.2754 -7.8697 -4.2442 32 1 -2.3981 -8.5389 -0.1776 33 1 2.6898 -3.6886 0.7388 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241125744.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:45 Heat of formation + Delta-G solvation = -197.629489 kcal Electronic energy + Delta-G solvation = -28084.987446 eV Core-core repulsion = 23296.254099 eV Total energy + Delta-G solvation = -4788.733347 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.67384 -48.85802 -47.89144 -47.18309 -46.96149 -39.13735 -37.32862 -34.04595 -31.96543 -31.58932 -29.41757 -28.70584 -26.16017 -25.16325 -22.72830 -22.01373 -21.15482 -20.58469 -18.42089 -18.05520 -17.96273 -17.82187 -16.43909 -16.12372 -15.93223 -15.60648 -15.50718 -15.24857 -15.00612 -14.74717 -14.26934 -13.87446 -13.80016 -13.44557 -13.41917 -13.25224 -13.18344 -13.01570 -12.66234 -12.50555 -12.42111 -12.19022 -12.03698 -11.67922 -11.30164 -11.11680 -10.99235 -10.75964 -10.60458 -10.26743 -9.74414 -9.37929 -9.25447 -8.58926 -7.76377 -7.42008 -7.09615 -4.69480 0.94715 1.16808 2.39933 2.77291 2.91598 2.92984 2.98707 3.07291 3.48667 3.70138 4.01606 4.25611 4.32527 4.53144 4.88296 4.91300 4.99577 5.08034 5.30264 5.40656 5.52761 5.68538 5.97033 6.05073 6.09585 6.18959 6.44896 6.67739 6.70331 6.74889 6.86762 6.91655 7.35920 7.39716 7.70325 7.76981 7.93694 8.30923 8.53212 8.61417 9.82749 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.020413 B = 0.003990 C = 0.003755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.316787 B = 7016.247496 C = 7455.245469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.075 3.925 3 Si 0.915 3.085 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.439 4.439 8 H 0.086 0.914 9 C 0.140 3.860 10 C -0.178 4.178 11 C -0.042 4.042 12 C -0.274 4.274 13 C 0.061 3.939 14 C -0.094 4.094 15 C -0.121 4.121 16 C 0.071 3.929 17 F -0.141 7.141 18 C -0.107 4.107 19 C -0.159 4.159 20 C 0.506 3.494 21 F -0.190 7.190 22 F -0.158 7.158 23 F -0.166 7.166 24 C 0.159 3.841 25 F -0.155 7.155 26 C -0.267 4.267 27 H 0.288 0.712 28 H 0.124 0.876 29 H 0.099 0.901 30 H 0.143 0.857 31 H 0.139 0.861 32 H 0.144 0.856 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.064 -7.668 -3.697 9.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.147 4.147 3 Si 0.739 3.261 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.467 4.467 8 H 0.104 0.896 9 C 0.137 3.863 10 C -0.197 4.197 11 C -0.061 4.061 12 C -0.276 4.276 13 C 0.060 3.940 14 C -0.112 4.112 15 C -0.140 4.140 16 C 0.052 3.948 17 F -0.120 7.120 18 C -0.126 4.126 19 C -0.161 4.161 20 C 0.452 3.548 21 F -0.171 7.171 22 F -0.139 7.139 23 F -0.147 7.147 24 C 0.140 3.860 25 F -0.133 7.133 26 C -0.287 4.287 27 H 0.100 0.900 28 H 0.142 0.858 29 H 0.117 0.883 30 H 0.161 0.839 31 H 0.157 0.843 32 H 0.161 0.839 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.289 -7.569 -3.623 9.013 hybrid contribution 0.191 0.356 0.383 0.557 sum -3.097 -7.213 -3.240 8.492 Atomic orbital electron populations 1.69807 1.07831 1.30321 1.31195 1.26073 0.94841 1.01919 0.91869 0.86226 0.80181 0.79316 0.80390 1.18408 1.19983 1.18629 1.19708 0.98524 0.91080 1.37356 0.89609 1.17470 0.90302 0.91288 0.87226 1.21005 0.99668 0.97148 1.01919 1.20173 0.97389 0.90927 0.97600 1.17803 1.03298 0.91624 1.14903 1.18632 0.91122 0.92569 0.91664 1.21282 0.98757 0.95427 0.95701 1.21238 0.98004 0.95261 0.99507 1.17436 0.99375 0.85136 0.92901 1.91485 1.80437 1.47730 1.92328 1.20754 1.00015 0.96407 0.95461 1.20033 1.05052 0.98495 0.92505 1.18170 0.74651 0.75086 0.86883 1.93108 1.79623 1.66034 1.78369 1.93369 1.34114 1.95866 1.90538 1.93255 1.82993 1.41937 1.96529 1.17127 0.94050 0.79968 0.94882 1.91399 1.88776 1.45499 1.87666 1.20604 1.06384 0.91589 1.10133 0.90032 0.85793 0.88309 0.83888 0.84339 0.83864 0.87448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.02 10.96 55.55 0.61 -17.41 16 2 C 0.07 1.69 5.13 -17.33 -0.09 1.61 16 3 Si 0.92 16.83 29.60 -169.99 -5.03 11.80 16 4 H -0.26 -4.74 7.11 56.52 0.40 -4.33 16 5 H -0.28 -4.93 7.11 56.52 0.40 -4.53 16 6 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 7 C -0.44 -10.61 9.03 -37.88 -0.34 -10.95 16 8 H 0.09 1.97 7.91 -52.49 -0.42 1.56 16 9 C 0.14 3.46 5.57 -106.81 -0.60 2.86 16 10 C -0.18 -4.19 8.63 -39.27 -0.34 -4.53 16 11 C -0.04 -0.90 9.66 -39.66 -0.38 -1.28 16 12 C -0.27 -5.75 4.10 -104.57 -0.43 -6.18 16 13 C 0.06 1.10 4.98 -104.88 -0.52 0.57 16 14 C -0.09 -1.39 9.74 -39.19 -0.38 -1.77 16 15 C -0.12 -1.57 10.01 -39.57 -0.40 -1.96 16 16 C 0.07 0.99 7.31 -39.28 -0.29 0.70 16 17 F -0.14 -1.90 17.26 2.25 0.04 -1.86 16 18 C -0.11 -1.61 9.40 -39.57 -0.37 -1.98 16 19 C -0.16 -2.78 5.33 -104.23 -0.56 -3.34 16 20 C 0.51 9.47 2.88 36.01 0.10 9.58 16 21 F -0.19 -3.17 15.97 2.25 0.04 -3.13 16 22 F -0.16 -3.24 11.89 2.25 0.03 -3.21 16 23 F -0.17 -3.39 16.52 2.25 0.04 -3.36 16 24 C 0.16 3.59 5.73 -39.50 -0.23 3.36 16 25 F -0.15 -3.39 13.45 2.25 0.03 -3.36 16 26 C -0.27 -6.33 9.70 -39.22 -0.38 -6.71 16 27 H 0.29 6.10 8.30 -40.82 -0.34 5.76 16 28 H 0.12 2.97 6.16 -52.49 -0.32 2.64 16 29 H 0.10 1.87 8.06 -52.48 -0.42 1.45 16 30 H 0.14 1.88 8.06 -52.48 -0.42 1.46 16 31 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 32 H 0.14 1.89 7.15 -52.49 -0.38 1.51 16 33 H 0.11 2.45 8.06 -52.49 -0.42 2.02 16 LS Contribution 305.91 15.07 4.61 4.61 Total: -1.00 -25.10 305.91 -6.78 -31.88 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -1.94 Total: 4.09 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: -5.19 Total: -20.04 kcal Atomic # 7 Polarization: -18.02 SS G_CDS: 0.61 Total: -17.41 kcal Atomic # 9 Polarization: -15.10 SS G_CDS: 0.17 Total: -14.93 kcal Atomic # 14 Polarization: 16.83 SS G_CDS: -5.03 Total: 11.80 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -25.10 -6.78 -31.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241125744.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.754 kcal (2) G-P(sol) polarization free energy of solvation -25.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds