Wall clock time and date at job start Tue Mar 31 2020 15:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30845 * 1 3 3 Si 1.86802 * 120.00348 * 2 1 4 4 H 1.48495 * 109.47439 * 270.00483 * 3 2 1 5 5 H 1.48504 * 109.46713 * 30.00157 * 3 2 1 6 6 H 1.48500 * 109.47256 * 149.99781 * 3 2 1 7 7 C 1.39930 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00202 * 197.79490 * 7 2 1 9 9 C 1.41326 * 119.99903 * 17.79464 * 7 2 1 10 10 C 1.40788 * 120.20544 * 24.65278 * 9 7 2 11 11 C 1.37618 * 120.01672 * 180.02562 * 10 9 7 12 12 C 1.38510 * 120.45073 * 359.67519 * 11 10 9 13 13 C 1.39542 * 120.42385 * 0.60333 * 12 11 10 14 14 C 1.48382 * 120.01830 * 179.69071 * 13 12 11 15 15 C 1.39378 * 120.09016 * 65.00415 * 14 13 12 16 16 C 1.37956 * 119.89653 * 180.29233 * 15 14 13 17 17 C 1.38559 * 120.10143 * 359.43111 * 16 15 14 18 18 F 1.35104 * 119.90758 * 180.29336 * 17 16 15 19 19 C 1.38526 * 120.18983 * 0.28032 * 17 16 15 20 20 C 1.37997 * 120.09743 * 0.02562 * 19 17 16 21 21 C 1.50703 * 120.05059 * 180.02562 * 20 19 17 22 22 F 1.39896 * 109.46854 * 0.02562 * 21 20 19 23 23 F 1.39896 * 109.47140 * 119.99990 * 21 20 19 24 24 F 1.39901 * 109.46781 * 239.99942 * 21 20 19 25 25 C 1.39104 * 119.96539 * 359.42340 * 13 12 11 26 26 F 1.35102 * 120.22241 * 180.29390 * 25 13 12 27 27 H 0.97003 * 119.99692 * 359.97438 * 1 2 3 28 28 H 1.07996 * 119.98728 * 359.97438 * 10 9 7 29 29 H 1.07997 * 119.76847 * 180.02562 * 11 10 9 30 30 H 1.08004 * 119.78322 * 180.30814 * 12 11 10 31 31 H 1.07997 * 120.04834 * 0.02562 * 15 14 13 32 32 H 1.08004 * 119.94658 * 179.71017 * 16 15 14 33 33 H 1.08000 * 119.95145 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.4900 2.0465 -1.4000 5 1 1.4400 2.6526 0.7001 6 1 3.5401 1.4401 0.7001 7 6 2.0081 -1.2118 -0.0005 8 1 3.0493 -1.2343 0.2853 9 6 1.3522 -2.4063 -0.3751 10 6 0.2230 -2.3610 -1.2148 11 6 -0.4130 -3.5264 -1.5767 12 6 0.0537 -4.7501 -1.1257 13 6 1.1678 -4.8163 -0.2881 14 6 1.6560 -6.1314 0.1953 15 6 2.1651 -7.0629 -0.7080 16 6 2.6123 -8.2867 -0.2550 17 6 2.5670 -8.5861 1.0971 18 9 3.0115 -9.7837 1.5372 19 6 2.0674 -7.6610 1.9991 20 6 1.6120 -6.4368 1.5540 21 6 1.0693 -5.4309 2.5362 22 9 1.1299 -5.9620 3.8290 23 9 1.8345 -4.2613 2.4767 24 9 -0.2599 -5.1355 2.2146 25 6 1.8239 -3.6490 0.0891 26 9 2.9066 -3.7075 0.8950 27 1 -0.4850 0.8401 0.0004 28 1 -0.1446 -1.4112 -1.5742 29 1 -1.2786 -3.4870 -2.2213 30 1 -0.4508 -5.6584 -1.4204 31 1 2.2053 -6.8284 -1.7615 32 1 3.0026 -9.0109 -0.9548 33 1 2.0334 -7.8986 3.0521 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241125962.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:27 Heat of formation + Delta-G solvation = -194.417670 kcal Electronic energy + Delta-G solvation = -28411.986204 eV Core-core repulsion = 23623.392133 eV Total energy + Delta-G solvation = -4788.594072 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.63967 -48.94699 -47.49149 -47.14263 -46.83547 -39.27382 -37.20249 -34.01645 -32.06086 -31.62100 -29.74254 -28.10578 -25.85333 -25.38872 -23.13289 -22.09853 -20.93150 -20.55925 -18.49981 -18.04793 -17.90426 -17.53844 -16.33365 -16.14016 -16.00360 -15.67180 -15.56732 -15.36006 -14.74959 -14.55597 -14.28000 -13.85744 -13.78955 -13.51230 -13.43231 -13.30835 -13.14233 -12.95380 -12.56372 -12.44643 -12.39516 -12.08901 -11.81037 -11.62369 -11.26378 -11.15838 -11.09457 -10.76294 -10.53326 -9.98008 -9.73727 -9.35899 -9.33451 -8.69307 -7.65010 -7.43148 -6.92442 -4.51530 0.84673 1.06424 2.46857 2.57272 3.01169 3.04702 3.05862 3.07263 3.39113 3.83858 3.98301 4.25493 4.38659 4.48195 4.81407 4.87243 4.92637 4.94067 5.24808 5.37767 5.54856 5.72408 5.88741 5.90974 6.05822 6.14590 6.32947 6.43057 6.65725 6.77540 6.92776 7.04401 7.29739 7.42496 7.75103 7.84071 7.93479 8.39831 8.61732 8.68980 10.01420 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.019048 B = 0.004502 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.618210 B = 6218.068493 C = 6590.923302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.077 3.923 3 Si 0.913 3.087 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.449 4.449 8 H 0.084 0.916 9 C 0.085 3.915 10 C -0.135 4.135 11 C -0.112 4.112 12 C -0.189 4.189 13 C -0.097 4.097 14 C 0.032 3.968 15 C -0.084 4.084 16 C -0.123 4.123 17 C 0.081 3.919 18 F -0.138 7.138 19 C -0.110 4.110 20 C -0.146 4.146 21 C 0.502 3.498 22 F -0.189 7.189 23 F -0.146 7.146 24 F -0.168 7.168 25 C 0.006 3.994 26 F -0.149 7.149 27 H 0.284 0.716 28 H 0.127 0.873 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.146 0.854 32 H 0.142 0.858 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.543 -10.238 -0.160 10.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.142 4.142 3 Si 0.737 3.263 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.478 4.478 8 H 0.102 0.898 9 C 0.082 3.918 10 C -0.155 4.155 11 C -0.130 4.130 12 C -0.209 4.209 13 C -0.098 4.098 14 C 0.031 3.969 15 C -0.102 4.102 16 C -0.142 4.142 17 C 0.062 3.938 18 F -0.117 7.117 19 C -0.129 4.129 20 C -0.147 4.147 21 C 0.448 3.552 22 F -0.171 7.171 23 F -0.127 7.127 24 F -0.150 7.150 25 C -0.015 4.015 26 F -0.127 7.127 27 H 0.095 0.905 28 H 0.145 0.855 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.164 0.836 32 H 0.160 0.840 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.382 -10.080 -0.055 10.174 hybrid contribution 0.415 0.641 0.497 0.911 sum 1.796 -9.439 0.442 9.618 Atomic orbital electron populations 1.69806 1.07639 1.29727 1.33890 1.25915 0.94773 1.01540 0.92019 0.86214 0.80598 0.80007 0.79475 1.19056 1.20113 1.18381 1.19526 0.98486 0.90829 1.38963 0.89769 1.17534 0.92706 0.90574 0.91023 1.21298 0.97796 0.97492 0.98914 1.20635 0.99205 0.92700 1.00494 1.20129 0.98931 0.96963 1.04872 1.18186 0.99349 0.88575 1.03712 1.18771 0.93184 0.94339 0.90600 1.21164 0.96966 0.91582 1.00491 1.21250 1.00854 0.98261 0.93836 1.17422 1.01694 0.82095 0.92573 1.91499 1.87230 1.42811 1.90163 1.20793 0.98970 0.92214 1.00874 1.19944 1.05899 0.94880 0.94000 1.18200 0.76687 0.81576 0.78761 1.93111 1.96307 1.86491 1.41167 1.93461 1.74425 1.49048 1.95750 1.93239 1.35448 1.93858 1.92418 1.17728 0.90613 0.93432 0.99690 1.91333 1.53179 1.97134 1.71092 0.90469 0.85483 0.88299 0.88234 0.83638 0.84030 0.83528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.39 10.96 55.55 0.61 -18.78 16 2 C 0.08 1.85 5.14 -17.34 -0.09 1.76 16 3 Si 0.91 18.15 29.60 -169.99 -5.03 13.12 16 4 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 5 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 6 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 7 C -0.45 -11.67 8.78 -37.78 -0.33 -12.01 16 8 H 0.08 2.18 7.73 -52.49 -0.41 1.77 16 9 C 0.08 2.18 5.57 -106.79 -0.60 1.58 16 10 C -0.14 -3.27 8.69 -38.84 -0.34 -3.61 16 11 C -0.11 -2.38 10.01 -39.71 -0.40 -2.77 16 12 C -0.19 -3.84 9.73 -39.00 -0.38 -4.22 16 13 C -0.10 -2.06 4.07 -104.91 -0.43 -2.48 16 14 C 0.03 0.57 4.99 -104.89 -0.52 0.04 16 15 C -0.08 -1.21 9.73 -39.26 -0.38 -1.59 16 16 C -0.12 -1.53 10.01 -39.57 -0.40 -1.92 16 17 C 0.08 1.10 7.30 -39.36 -0.29 0.81 16 18 F -0.14 -1.80 17.26 2.25 0.04 -1.76 16 19 C -0.11 -1.61 9.40 -39.56 -0.37 -1.98 16 20 C -0.15 -2.55 5.33 -104.31 -0.56 -3.11 16 21 C 0.50 9.65 2.88 36.01 0.10 9.75 16 22 F -0.19 -3.23 15.97 2.25 0.04 -3.19 16 23 F -0.15 -3.23 11.88 2.25 0.03 -3.21 16 24 F -0.17 -3.46 16.52 2.25 0.04 -3.42 16 25 C 0.01 0.14 5.79 -38.29 -0.22 -0.08 16 26 F -0.15 -3.63 12.90 2.25 0.03 -3.60 16 27 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 28 H 0.13 3.13 6.16 -52.49 -0.32 2.81 16 29 H 0.10 1.83 8.06 -52.49 -0.42 1.40 16 30 H 0.10 1.76 8.06 -52.48 -0.42 1.34 16 31 H 0.15 1.83 8.06 -52.49 -0.42 1.41 16 32 H 0.14 1.31 8.06 -52.48 -0.42 0.88 16 33 H 0.15 1.89 7.15 -52.49 -0.38 1.52 16 LS Contribution 305.39 15.07 4.60 4.60 Total: -1.00 -26.66 305.39 -6.77 -33.43 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -1.93 Total: 2.63 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: -5.19 Total: -19.83 kcal Atomic # 7 Polarization: -19.39 SS G_CDS: 0.61 Total: -18.78 kcal Atomic # 9 Polarization: -15.34 SS G_CDS: 0.17 Total: -15.18 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.03 Total: 13.12 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -26.66 -6.77 -33.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241125962.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.984 kcal (2) G-P(sol) polarization free energy of solvation -26.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds