Wall clock time and date at job start Tue Mar 31 2020 15:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30845 * 1 3 3 Si 1.86802 * 120.00348 * 2 1 4 4 H 1.48495 * 109.47439 * 270.00483 * 3 2 1 5 5 H 1.48504 * 109.46713 * 30.00157 * 3 2 1 6 6 H 1.48500 * 109.47256 * 149.99781 * 3 2 1 7 7 C 1.39930 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00202 * 197.79490 * 7 2 1 9 9 C 1.41326 * 119.99903 * 17.79464 * 7 2 1 10 10 C 1.40788 * 120.20544 * 24.65278 * 9 7 2 11 11 C 1.37618 * 120.01672 * 180.02562 * 10 9 7 12 12 C 1.38510 * 120.45073 * 359.67519 * 11 10 9 13 13 C 1.39542 * 120.42385 * 0.60333 * 12 11 10 14 14 C 1.48382 * 120.01830 * 179.69071 * 13 12 11 15 15 C 1.39378 * 120.09016 * 65.00415 * 14 13 12 16 16 C 1.37956 * 119.89653 * 180.29233 * 15 14 13 17 17 C 1.38559 * 120.10143 * 359.43111 * 16 15 14 18 18 F 1.35104 * 119.90758 * 180.29336 * 17 16 15 19 19 C 1.38526 * 120.18983 * 0.28032 * 17 16 15 20 20 C 1.37997 * 120.09743 * 0.02562 * 19 17 16 21 21 C 1.50703 * 120.05059 * 180.02562 * 20 19 17 22 22 F 1.39896 * 109.46854 * 0.02562 * 21 20 19 23 23 F 1.39896 * 109.47140 * 119.99990 * 21 20 19 24 24 F 1.39901 * 109.46781 * 239.99942 * 21 20 19 25 25 C 1.39104 * 119.96539 * 359.42340 * 13 12 11 26 26 F 1.35102 * 120.22241 * 180.29390 * 25 13 12 27 27 H 0.97003 * 119.99692 * 359.97438 * 1 2 3 28 28 H 1.07996 * 119.98728 * 359.97438 * 10 9 7 29 29 H 1.07997 * 119.76847 * 180.02562 * 11 10 9 30 30 H 1.08004 * 119.78322 * 180.30814 * 12 11 10 31 31 H 1.07997 * 120.04834 * 0.02562 * 15 14 13 32 32 H 1.08004 * 119.94658 * 179.71017 * 16 15 14 33 33 H 1.08000 * 119.95145 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.4900 2.0465 -1.4000 5 1 1.4400 2.6526 0.7001 6 1 3.5401 1.4401 0.7001 7 6 2.0081 -1.2118 -0.0005 8 1 3.0493 -1.2343 0.2853 9 6 1.3522 -2.4063 -0.3751 10 6 0.2230 -2.3610 -1.2148 11 6 -0.4130 -3.5264 -1.5767 12 6 0.0537 -4.7501 -1.1257 13 6 1.1678 -4.8163 -0.2881 14 6 1.6560 -6.1314 0.1953 15 6 2.1651 -7.0629 -0.7080 16 6 2.6123 -8.2867 -0.2550 17 6 2.5670 -8.5861 1.0971 18 9 3.0115 -9.7837 1.5372 19 6 2.0674 -7.6610 1.9991 20 6 1.6120 -6.4368 1.5540 21 6 1.0693 -5.4309 2.5362 22 9 1.1299 -5.9620 3.8290 23 9 1.8345 -4.2613 2.4767 24 9 -0.2599 -5.1355 2.2146 25 6 1.8239 -3.6490 0.0891 26 9 2.9066 -3.7075 0.8950 27 1 -0.4850 0.8401 0.0004 28 1 -0.1446 -1.4112 -1.5742 29 1 -1.2786 -3.4870 -2.2213 30 1 -0.4508 -5.6584 -1.4204 31 1 2.2053 -6.8284 -1.7615 32 1 3.0026 -9.0109 -0.9548 33 1 2.0334 -7.8986 3.0521 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241125962.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:26 Heat of formation + Delta-G solvation = -205.370052 kcal Electronic energy + Delta-G solvation = -28412.461135 eV Core-core repulsion = 23623.392133 eV Total energy + Delta-G solvation = -4789.069003 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.17476 -50.00111 -49.25263 -48.68008 -48.49016 -40.54284 -38.86514 -35.76117 -33.32832 -33.00269 -31.50698 -29.60239 -27.38145 -27.04903 -24.46006 -23.44497 -22.64502 -22.12469 -19.84936 -19.54634 -19.45084 -19.18757 -17.94892 -17.58554 -17.22144 -17.07489 -17.03567 -16.68154 -16.44603 -16.27416 -15.66159 -15.36152 -15.32602 -14.99035 -14.85809 -14.75439 -14.63765 -14.48456 -14.14241 -13.91314 -13.79942 -13.54688 -13.49146 -13.22785 -12.94127 -12.74168 -12.52299 -12.25068 -12.16422 -11.74089 -11.46226 -11.11837 -10.45558 -9.98161 -9.41176 -9.13187 -8.71217 -6.41711 -0.35572 -0.09167 0.77991 0.82698 1.36312 1.47184 1.49274 1.62278 2.17778 2.21679 2.60134 2.63366 2.94309 3.22388 3.39855 3.46447 3.54042 3.72833 3.89046 3.99220 4.15245 4.36015 4.48569 4.68787 4.78367 4.79616 4.94578 4.96618 5.10580 5.19356 5.27101 5.53885 5.64042 5.68313 5.99256 6.00476 6.14547 6.54617 6.76889 6.86085 8.25058 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.019048 B = 0.004502 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.618210 B = 6218.068493 C = 6590.923302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.041 3.959 3 Si 0.981 3.019 4 H -0.255 1.255 5 H -0.264 1.264 6 H -0.266 1.266 7 C -0.493 4.493 8 H 0.067 0.933 9 C 0.054 3.946 10 C -0.157 4.157 11 C -0.110 4.110 12 C -0.179 4.179 13 C -0.088 4.088 14 C 0.000 4.000 15 C -0.077 4.077 16 C -0.101 4.101 17 C 0.091 3.909 18 F -0.131 7.131 19 C -0.110 4.110 20 C -0.159 4.159 21 C 0.496 3.504 22 F -0.179 7.179 23 F -0.170 7.170 24 F -0.181 7.181 25 C -0.021 4.021 26 F -0.158 7.158 27 H 0.292 0.708 28 H 0.114 0.886 29 H 0.130 0.870 30 H 0.136 0.864 31 H 0.167 0.833 32 H 0.184 0.816 33 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.709 -12.669 -1.220 12.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.175 4.175 3 Si 0.802 3.198 4 H -0.179 1.179 5 H -0.189 1.189 6 H -0.190 1.190 7 C -0.522 4.522 8 H 0.085 0.915 9 C 0.051 3.949 10 C -0.177 4.177 11 C -0.128 4.128 12 C -0.198 4.198 13 C -0.089 4.089 14 C -0.001 4.001 15 C -0.094 4.094 16 C -0.119 4.119 17 C 0.072 3.928 18 F -0.109 7.109 19 C -0.129 4.129 20 C -0.160 4.160 21 C 0.441 3.559 22 F -0.160 7.160 23 F -0.151 7.151 24 F -0.163 7.163 25 C -0.041 4.041 26 F -0.137 7.137 27 H 0.103 0.897 28 H 0.132 0.868 29 H 0.148 0.852 30 H 0.154 0.846 31 H 0.184 0.816 32 H 0.202 0.798 33 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 1.538 -12.534 -1.116 12.677 hybrid contribution 0.337 1.136 0.858 1.463 sum 1.875 -11.399 -0.257 11.555 Atomic orbital electron populations 1.69834 1.08746 1.30956 1.34636 1.26660 0.95535 1.04240 0.91090 0.85214 0.78875 0.75853 0.79890 1.17904 1.18868 1.18987 1.19628 0.98163 0.92546 1.41816 0.91455 1.17894 0.93748 0.91381 0.91867 1.21284 0.98294 0.98201 0.99876 1.20994 0.99548 0.92123 1.00163 1.20600 0.98038 0.97887 1.03281 1.18465 0.98613 0.89386 1.02393 1.18760 0.95942 0.93862 0.91506 1.21366 0.95879 0.91329 1.00867 1.21618 0.98542 0.97879 0.93906 1.17484 1.00592 0.81845 0.92896 1.91531 1.86964 1.42265 1.90184 1.20909 0.98523 0.91390 1.02032 1.19809 1.07524 0.95388 0.93321 1.18542 0.76016 0.81446 0.79851 1.93117 1.96208 1.86122 1.40566 1.93411 1.74994 1.50732 1.95947 1.93199 1.36427 1.94044 1.92599 1.18010 0.91207 0.94340 1.00530 1.91291 1.53682 1.97197 1.71534 0.89673 0.86796 0.85231 0.84642 0.81588 0.79834 0.82180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.81 10.96 21.82 0.24 -41.57 16 2 C 0.04 2.05 5.14 85.25 0.44 2.49 16 3 Si 0.98 38.40 29.60 68.60 2.03 40.43 16 4 H -0.25 -9.43 7.11 99.48 0.71 -8.73 16 5 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 6 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 7 C -0.49 -27.15 8.78 23.44 0.21 -26.94 16 8 H 0.07 3.76 7.73 -2.91 -0.02 3.74 16 9 C 0.05 2.91 5.57 -21.27 -0.12 2.79 16 10 C -0.16 -7.81 8.69 22.75 0.20 -7.61 16 11 C -0.11 -4.59 10.01 22.19 0.22 -4.37 16 12 C -0.18 -6.95 9.73 22.65 0.22 -6.73 16 13 C -0.09 -3.67 4.07 -20.05 -0.08 -3.75 16 14 C 0.00 -0.01 4.99 -20.04 -0.10 -0.11 16 15 C -0.08 -1.92 9.73 22.48 0.22 -1.70 16 16 C -0.10 -2.01 10.01 22.28 0.22 -1.78 16 17 C 0.09 2.09 7.30 22.42 0.16 2.26 16 18 F -0.13 -2.85 17.26 44.97 0.78 -2.07 16 19 C -0.11 -2.96 9.40 22.28 0.21 -2.75 16 20 C -0.16 -5.38 5.33 -19.66 -0.10 -5.49 16 21 C 0.50 19.25 2.88 71.24 0.21 19.46 16 22 F -0.18 -6.08 15.97 44.97 0.72 -5.36 16 23 F -0.17 -7.85 11.88 44.97 0.53 -7.32 16 24 F -0.18 -7.57 16.52 44.97 0.74 -6.82 16 25 C -0.02 -1.03 5.79 23.10 0.13 -0.90 16 26 F -0.16 -8.09 12.90 44.97 0.58 -7.51 16 27 H 0.29 13.41 8.30 -92.71 -0.77 12.64 16 28 H 0.11 5.87 6.16 -2.91 -0.02 5.85 16 29 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 30 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 31 H 0.17 3.46 8.06 -2.91 -0.02 3.43 16 32 H 0.18 2.17 8.06 -2.91 -0.02 2.14 16 33 H 0.16 3.77 7.15 -2.91 -0.02 3.75 16 Total: -1.00 -61.47 305.39 8.85 -52.62 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 1.20 Total: 12.76 kcal Atomic # 6 Polarization: -37.18 SS G_CDS: 2.03 Total: -35.15 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: 0.24 Total: -41.57 kcal Atomic # 9 Polarization: -32.44 SS G_CDS: 3.35 Total: -29.08 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.43 kcal Total: -61.47 8.85 -52.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241125962.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.754 kcal (2) G-P(sol) polarization free energy of solvation -61.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds