Wall clock time and date at job start Tue Mar 31 2020 15:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30807 * 1 3 3 Si 1.86799 * 119.99657 * 2 1 4 4 H 1.48495 * 109.47223 * 270.00111 * 3 2 1 5 5 H 1.48497 * 109.47343 * 30.00206 * 3 2 1 6 6 H 1.48500 * 109.47141 * 149.99964 * 3 2 1 7 7 C 1.40031 * 120.00302 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00122 * 199.80404 * 7 2 1 9 9 C 1.40811 * 119.99687 * 19.80508 * 7 2 1 10 10 C 1.40800 * 120.30530 * 24.07587 * 9 7 2 11 11 C 1.36336 * 120.01649 * 180.25701 * 10 9 7 12 12 C 1.39225 * 120.65897 * 359.77995 * 11 10 9 13 13 F 1.35107 * 119.69237 * 179.97438 * 12 11 10 14 14 C 1.38370 * 120.61456 * 359.96749 * 12 11 10 15 15 C 1.39076 * 119.95291 * 0.02562 * 14 12 11 16 16 C 1.47853 * 120.31739 * 179.97438 * 15 14 12 17 17 C 1.39698 * 120.11932 * 281.91000 * 16 15 14 18 18 C 1.37840 * 119.87274 * 179.97438 * 17 16 15 19 19 C 1.38666 * 120.12706 * 0.25454 * 18 17 16 20 20 F 1.35095 * 119.87642 * 179.75203 * 19 18 17 21 21 C 1.38626 * 120.24428 * 359.48669 * 19 18 17 22 22 C 1.37889 * 120.11937 * 0.51563 * 21 19 18 23 23 C 1.50696 * 120.06014 * 179.72529 * 22 21 19 24 24 F 1.39902 * 109.47071 * 357.46407 * 23 22 21 25 25 F 1.39895 * 109.47389 * 117.46741 * 23 22 21 26 26 F 1.39904 * 109.46878 * 237.46612 * 23 22 21 27 27 H 0.96995 * 120.00372 * 359.97438 * 1 2 3 28 28 H 1.07998 * 119.98935 * 359.97438 * 10 9 7 29 29 H 1.08001 * 119.67016 * 179.77037 * 11 10 9 30 30 H 1.08001 * 120.01956 * 180.02562 * 14 12 11 31 31 H 1.08002 * 120.06101 * 359.95405 * 17 16 15 32 32 H 1.07999 * 119.93608 * 179.97438 * 18 17 16 33 33 H 1.07991 * 119.93762 * 180.28259 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2420 1.6178 0.0000 4 1 2.4894 2.0465 -1.4000 5 1 1.4394 2.6527 0.7001 6 1 3.5395 1.4403 0.7000 7 6 2.0083 -1.2127 0.0005 8 1 3.0403 -1.2402 0.3174 9 6 1.3667 -2.3962 -0.4121 10 6 0.2558 -2.3384 -1.2752 11 6 -0.3642 -3.4877 -1.6669 12 6 0.0924 -4.7266 -1.2254 13 9 -0.5370 -5.8532 -1.6253 14 6 1.1850 -4.8149 -0.3809 15 6 1.8368 -3.6586 0.0344 16 6 3.0047 -3.7435 0.9371 17 6 2.8195 -3.9635 2.3042 18 6 3.9120 -4.0423 3.1410 19 6 5.1927 -3.8984 2.6292 20 9 6.2595 -3.9715 3.4547 21 6 5.3825 -3.6852 1.2726 22 6 4.2969 -3.6046 0.4263 23 6 4.5046 -3.3666 -1.0472 24 9 5.8699 -3.2040 -1.3055 25 9 4.0207 -4.4627 -1.7694 26 9 3.8159 -2.2121 -1.4347 27 1 -0.4850 0.8400 0.0004 28 1 -0.1081 -1.3830 -1.6234 29 1 -1.2182 -3.4366 -2.3260 30 1 1.5314 -5.7810 -0.0447 31 1 1.8223 -4.0714 2.7046 32 1 3.7700 -4.2120 4.1981 33 1 6.3823 -3.5783 0.8786 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241125994.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:39 Heat of formation + Delta-G solvation = -197.636469 kcal Electronic energy + Delta-G solvation = -28506.875332 eV Core-core repulsion = 23718.141683 eV Total energy + Delta-G solvation = -4788.733649 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.54524 -48.74518 -47.53249 -47.13146 -46.86803 -39.14274 -37.19253 -33.84747 -31.94792 -31.57005 -29.61362 -28.45924 -25.74460 -25.14699 -22.93872 -21.88166 -21.25745 -20.30585 -18.31563 -17.93076 -17.79873 -17.52710 -16.65035 -16.03123 -15.79106 -15.60518 -15.41237 -14.86966 -14.66061 -14.29049 -14.18043 -13.93002 -13.82802 -13.47918 -13.42053 -13.18256 -13.09148 -13.02817 -12.86773 -12.43993 -12.24311 -12.13896 -11.83041 -11.63614 -11.31380 -11.22659 -11.03429 -10.73584 -10.48579 -10.11453 -9.71197 -9.31917 -9.09150 -8.34070 -7.79600 -7.49871 -7.07255 -4.58648 1.11322 1.34884 2.43227 2.61521 2.95179 2.98913 3.03565 3.19456 3.62520 3.75031 4.13264 4.29557 4.44810 4.66595 5.00125 5.05476 5.09610 5.17894 5.31733 5.57423 5.77240 5.83812 5.95457 6.07474 6.10541 6.30870 6.42980 6.65183 6.75188 6.84647 6.95842 6.98757 7.22011 7.43816 7.67895 7.73165 7.95856 8.30313 8.55404 8.63659 9.85795 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.009275 B = 0.007189 C = 0.005473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3018.159261 B = 3894.022237 C = 5114.931142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.078 3.922 3 Si 0.905 3.095 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.432 4.432 8 H 0.087 0.913 9 C 0.138 3.862 10 C -0.137 4.137 11 C -0.117 4.117 12 C -0.052 4.052 13 F -0.173 7.173 14 C -0.075 4.075 15 C -0.213 4.213 16 C 0.077 3.923 17 C -0.087 4.087 18 C -0.123 4.123 19 C 0.071 3.929 20 F -0.143 7.143 21 C -0.111 4.111 22 C -0.157 4.157 23 C 0.507 3.493 24 F -0.192 7.192 25 F -0.174 7.174 26 F -0.145 7.145 27 H 0.287 0.713 28 H 0.128 0.872 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.142 0.858 32 H 0.137 0.863 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.117 -2.518 2.785 7.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.143 4.143 3 Si 0.728 3.272 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.459 4.459 8 H 0.105 0.895 9 C 0.135 3.865 10 C -0.156 4.156 11 C -0.136 4.136 12 C -0.071 4.071 13 F -0.152 7.152 14 C -0.094 4.094 15 C -0.215 4.215 16 C 0.076 3.924 17 C -0.105 4.105 18 C -0.141 4.141 19 C 0.052 3.948 20 F -0.121 7.121 21 C -0.130 4.130 22 C -0.159 4.159 23 C 0.453 3.547 24 F -0.174 7.174 25 F -0.156 7.156 26 F -0.126 7.126 27 H 0.098 0.902 28 H 0.145 0.855 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.160 0.840 32 H 0.155 0.845 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.925 -2.378 2.779 6.963 hybrid contribution 0.422 0.652 -0.111 0.785 sum 6.347 -1.726 2.669 7.098 Atomic orbital electron populations 1.69798 1.07755 1.30111 1.32114 1.26013 0.94696 1.01776 0.91832 0.86326 0.80804 0.80163 0.79868 1.18788 1.20034 1.18182 1.19686 0.98991 0.91025 1.36219 0.89466 1.17420 0.90380 0.90585 0.88135 1.20913 0.98434 0.96817 0.99460 1.20504 1.00152 0.91838 1.01130 1.17064 0.99438 0.81520 1.09119 1.91294 1.82351 1.50961 1.90623 1.20344 0.94600 0.96885 0.97602 1.18107 1.01470 0.93588 1.08325 1.18496 0.90942 0.89779 0.93163 1.21275 0.98904 0.98544 0.91795 1.21223 0.90879 1.00941 1.01090 1.17433 0.83619 1.06184 0.87550 1.91472 1.54834 1.94241 1.71576 1.20730 0.99595 1.00873 0.91816 1.20022 0.94866 1.09135 0.91829 1.18153 0.73125 0.75542 0.87913 1.93105 1.33436 1.95595 1.95221 1.93204 1.87900 1.54447 1.80023 1.93426 1.78431 1.48586 1.92173 0.90230 0.85468 0.88065 0.87958 0.84009 0.84484 0.83996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.86 11.04 55.55 0.61 -17.24 16 2 C 0.08 1.76 5.09 -17.32 -0.09 1.67 16 3 Si 0.90 17.33 29.60 -169.99 -5.03 12.30 16 4 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 5 H -0.28 -5.14 7.11 56.52 0.40 -4.74 16 6 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 7 C -0.43 -10.09 6.74 -37.94 -0.26 -10.34 16 8 H 0.09 2.02 5.74 -52.49 -0.30 1.72 16 9 C 0.14 3.24 4.49 -106.55 -0.48 2.77 16 10 C -0.14 -3.24 8.64 -39.30 -0.34 -3.58 16 11 C -0.12 -2.62 9.94 -39.90 -0.40 -3.02 16 12 C -0.05 -1.16 7.31 -39.17 -0.29 -1.45 16 13 F -0.17 -3.79 17.26 2.25 0.04 -3.75 16 14 C -0.08 -1.61 9.75 -39.22 -0.38 -2.00 16 15 C -0.21 -4.60 3.86 -104.25 -0.40 -5.00 16 16 C 0.08 1.45 4.21 -104.89 -0.44 1.01 16 17 C -0.09 -1.42 9.79 -39.18 -0.38 -1.80 16 18 C -0.12 -1.74 10.01 -39.57 -0.40 -2.13 16 19 C 0.07 1.06 7.31 -39.28 -0.29 0.78 16 20 F -0.14 -2.05 17.26 2.25 0.04 -2.01 16 21 C -0.11 -1.75 9.40 -39.57 -0.37 -2.12 16 22 C -0.16 -2.83 4.85 -104.23 -0.51 -3.34 16 23 C 0.51 9.51 2.89 36.00 0.10 9.61 16 24 F -0.19 -3.24 15.98 2.25 0.04 -3.20 16 25 F -0.17 -3.40 16.69 2.25 0.04 -3.36 16 26 F -0.15 -3.05 12.34 2.25 0.03 -3.02 16 27 H 0.29 6.01 8.30 -40.82 -0.34 5.67 16 28 H 0.13 3.06 6.19 -52.49 -0.32 2.73 16 29 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 30 H 0.10 2.00 8.06 -52.49 -0.42 1.58 16 31 H 0.14 2.15 8.06 -52.49 -0.42 1.72 16 32 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 33 H 0.14 1.96 7.15 -52.49 -0.38 1.59 16 LS Contribution 305.35 15.07 4.60 4.60 Total: -1.00 -24.43 305.35 -6.37 -30.81 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -1.83 Total: 3.82 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -4.91 Total: -18.94 kcal Atomic # 7 Polarization: -17.86 SS G_CDS: 0.61 Total: -17.24 kcal Atomic # 9 Polarization: -15.53 SS G_CDS: 0.18 Total: -15.35 kcal Atomic # 14 Polarization: 17.33 SS G_CDS: -5.03 Total: 12.30 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -24.43 -6.37 -30.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241125994.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.830 kcal (2) G-P(sol) polarization free energy of solvation -24.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds