Wall clock time and date at job start Tue Mar 31 2020 15:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30807 * 1 3 3 Si 1.86799 * 119.99657 * 2 1 4 4 H 1.48495 * 109.47223 * 270.00111 * 3 2 1 5 5 H 1.48497 * 109.47343 * 30.00206 * 3 2 1 6 6 H 1.48500 * 109.47141 * 149.99964 * 3 2 1 7 7 C 1.40031 * 120.00302 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00122 * 199.80404 * 7 2 1 9 9 C 1.40811 * 119.99687 * 19.80508 * 7 2 1 10 10 C 1.40800 * 120.30530 * 24.07587 * 9 7 2 11 11 C 1.36336 * 120.01649 * 180.25701 * 10 9 7 12 12 C 1.39225 * 120.65897 * 359.77995 * 11 10 9 13 13 F 1.35107 * 119.69237 * 179.97438 * 12 11 10 14 14 C 1.38370 * 120.61456 * 359.96749 * 12 11 10 15 15 C 1.39076 * 119.95291 * 0.02562 * 14 12 11 16 16 C 1.47853 * 120.31739 * 179.97438 * 15 14 12 17 17 C 1.39698 * 120.11932 * 281.91000 * 16 15 14 18 18 C 1.37840 * 119.87274 * 179.97438 * 17 16 15 19 19 C 1.38666 * 120.12706 * 0.25454 * 18 17 16 20 20 F 1.35095 * 119.87642 * 179.75203 * 19 18 17 21 21 C 1.38626 * 120.24428 * 359.48669 * 19 18 17 22 22 C 1.37889 * 120.11937 * 0.51563 * 21 19 18 23 23 C 1.50696 * 120.06014 * 179.72529 * 22 21 19 24 24 F 1.39902 * 109.47071 * 357.46407 * 23 22 21 25 25 F 1.39895 * 109.47389 * 117.46741 * 23 22 21 26 26 F 1.39904 * 109.46878 * 237.46612 * 23 22 21 27 27 H 0.96995 * 120.00372 * 359.97438 * 1 2 3 28 28 H 1.07998 * 119.98935 * 359.97438 * 10 9 7 29 29 H 1.08001 * 119.67016 * 179.77037 * 11 10 9 30 30 H 1.08001 * 120.01956 * 180.02562 * 14 12 11 31 31 H 1.08002 * 120.06101 * 359.95405 * 17 16 15 32 32 H 1.07999 * 119.93608 * 179.97438 * 18 17 16 33 33 H 1.07991 * 119.93762 * 180.28259 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2420 1.6178 0.0000 4 1 2.4894 2.0465 -1.4000 5 1 1.4394 2.6527 0.7001 6 1 3.5395 1.4403 0.7000 7 6 2.0083 -1.2127 0.0005 8 1 3.0403 -1.2402 0.3174 9 6 1.3667 -2.3962 -0.4121 10 6 0.2558 -2.3384 -1.2752 11 6 -0.3642 -3.4877 -1.6669 12 6 0.0924 -4.7266 -1.2254 13 9 -0.5370 -5.8532 -1.6253 14 6 1.1850 -4.8149 -0.3809 15 6 1.8368 -3.6586 0.0344 16 6 3.0047 -3.7435 0.9371 17 6 2.8195 -3.9635 2.3042 18 6 3.9120 -4.0423 3.1410 19 6 5.1927 -3.8984 2.6292 20 9 6.2595 -3.9715 3.4547 21 6 5.3825 -3.6852 1.2726 22 6 4.2969 -3.6046 0.4263 23 6 4.5046 -3.3666 -1.0472 24 9 5.8699 -3.2040 -1.3055 25 9 4.0207 -4.4627 -1.7694 26 9 3.8159 -2.2121 -1.4347 27 1 -0.4850 0.8400 0.0004 28 1 -0.1081 -1.3830 -1.6234 29 1 -1.2182 -3.4366 -2.3260 30 1 1.5314 -5.7810 -0.0447 31 1 1.8223 -4.0714 2.7046 32 1 3.7700 -4.2120 4.1981 33 1 6.3823 -3.5783 0.8786 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241125994.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:38 Heat of formation + Delta-G solvation = -205.652395 kcal Electronic energy + Delta-G solvation = -28507.222929 eV Core-core repulsion = 23718.141683 eV Total energy + Delta-G solvation = -4789.081246 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.02721 -49.91203 -49.28127 -48.58285 -48.41811 -40.53735 -38.78734 -35.55564 -33.36561 -32.92527 -31.34643 -29.97012 -27.21964 -26.77113 -24.35260 -23.25340 -22.97040 -21.85332 -19.71910 -19.38306 -19.32014 -19.16263 -18.23286 -17.37922 -17.21599 -17.01383 -16.62021 -16.46581 -16.23795 -16.03634 -15.73584 -15.39202 -15.33640 -14.91818 -14.83746 -14.67325 -14.59127 -14.48374 -14.33768 -14.06222 -13.80599 -13.60713 -13.30984 -13.09816 -12.85635 -12.79904 -12.56450 -12.20698 -12.08285 -11.75622 -11.39169 -11.01602 -10.32960 -9.72520 -9.45397 -9.23576 -8.75880 -6.33989 -0.16069 0.08044 0.73111 0.89023 1.38924 1.48063 1.49587 1.76667 2.16748 2.34841 2.58441 2.75385 3.09317 3.35651 3.52024 3.56153 3.72176 3.84093 4.00546 4.10207 4.27899 4.30832 4.40312 4.60642 4.89513 4.95215 5.01182 5.04638 5.16124 5.25671 5.36548 5.50869 5.64493 5.80438 5.90366 5.98131 6.22380 6.55556 6.81993 6.89919 8.19875 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.009275 B = 0.007189 C = 0.005473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3018.159261 B = 3894.022237 C = 5114.931142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.045 3.955 3 Si 0.961 3.039 4 H -0.264 1.264 5 H -0.265 1.265 6 H -0.258 1.258 7 C -0.446 4.446 8 H 0.085 0.915 9 C 0.118 3.882 10 C -0.160 4.160 11 C -0.122 4.122 12 C -0.068 4.068 13 F -0.172 7.172 14 C -0.079 4.079 15 C -0.202 4.202 16 C 0.047 3.953 17 C -0.090 4.090 18 C -0.105 4.105 19 C 0.078 3.922 20 F -0.135 7.135 21 C -0.109 4.109 22 C -0.167 4.167 23 C 0.504 3.496 24 F -0.181 7.181 25 F -0.183 7.183 26 F -0.162 7.162 27 H 0.294 0.706 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.120 0.880 31 H 0.150 0.850 32 H 0.174 0.826 33 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.530 -2.549 4.436 9.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.174 4.174 3 Si 0.783 3.217 4 H -0.189 1.189 5 H -0.190 1.190 6 H -0.181 1.181 7 C -0.473 4.473 8 H 0.103 0.897 9 C 0.115 3.885 10 C -0.180 4.180 11 C -0.141 4.141 12 C -0.088 4.088 13 F -0.151 7.151 14 C -0.098 4.098 15 C -0.204 4.204 16 C 0.047 3.953 17 C -0.108 4.108 18 C -0.123 4.123 19 C 0.059 3.941 20 F -0.114 7.114 21 C -0.128 4.128 22 C -0.169 4.169 23 C 0.450 3.550 24 F -0.163 7.163 25 F -0.164 7.164 26 F -0.143 7.143 27 H 0.105 0.895 28 H 0.134 0.866 29 H 0.133 0.867 30 H 0.138 0.862 31 H 0.168 0.832 32 H 0.192 0.808 33 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 7.336 -2.423 4.432 8.907 hybrid contribution 0.045 0.584 -0.579 0.824 sum 7.381 -1.839 3.853 8.526 Atomic orbital electron populations 1.69826 1.08798 1.31215 1.32545 1.26664 0.95270 1.04200 0.91264 0.85476 0.79651 0.76915 0.79680 1.18907 1.18978 1.18134 1.19770 0.98938 0.91636 1.36961 0.89694 1.17686 0.90624 0.91715 0.88442 1.20889 0.99624 0.96691 1.00766 1.20646 1.00490 0.91703 1.01222 1.17237 1.00134 0.81561 1.09851 1.91287 1.82394 1.50744 1.90675 1.20591 0.94236 0.97812 0.97144 1.18351 1.01674 0.92795 1.07560 1.18502 0.90334 0.92409 0.94055 1.21368 1.00171 0.98408 0.90835 1.21513 0.89681 0.98603 1.02531 1.17483 0.84108 1.05214 0.87272 1.91501 1.54577 1.94068 1.71238 1.20886 0.99696 1.00127 0.92083 1.19935 0.95219 1.10369 0.91339 1.18316 0.73355 0.74783 0.88539 1.93116 1.32415 1.95499 1.95234 1.93182 1.88108 1.54743 1.80370 1.93388 1.78973 1.49556 1.92415 0.89523 0.86641 0.86720 0.86206 0.83190 0.80849 0.82287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.30 11.04 21.84 0.24 -37.06 16 2 C 0.04 2.03 5.09 85.28 0.43 2.46 16 3 Si 0.96 35.18 29.60 68.60 2.03 37.21 16 4 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 5 H -0.27 -9.19 7.11 99.48 0.71 -8.49 16 6 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 7 C -0.45 -20.99 6.74 23.33 0.16 -20.83 16 8 H 0.09 3.95 5.74 -2.91 -0.02 3.94 16 9 C 0.12 5.65 4.49 -21.11 -0.09 5.56 16 10 C -0.16 -7.79 8.64 22.45 0.19 -7.60 16 11 C -0.12 -5.55 9.94 22.06 0.22 -5.34 16 12 C -0.07 -3.07 7.31 22.54 0.16 -2.91 16 13 F -0.17 -7.47 17.26 44.97 0.78 -6.70 16 14 C -0.08 -3.37 9.75 22.50 0.22 -3.15 16 15 C -0.20 -8.71 3.86 -19.62 -0.08 -8.79 16 16 C 0.05 1.75 4.21 -20.04 -0.08 1.67 16 17 C -0.09 -2.73 9.79 22.53 0.22 -2.51 16 18 C -0.10 -2.59 10.01 22.28 0.22 -2.36 16 19 C 0.08 2.07 7.31 22.46 0.16 2.24 16 20 F -0.14 -3.38 17.26 44.97 0.78 -2.60 16 21 C -0.11 -3.16 9.40 22.28 0.21 -2.95 16 22 C -0.17 -5.81 4.85 -19.61 -0.10 -5.91 16 23 C 0.50 18.69 2.89 71.23 0.21 18.90 16 24 F -0.18 -5.92 15.98 44.97 0.72 -5.20 16 25 F -0.18 -7.12 16.69 44.97 0.75 -6.37 16 26 F -0.16 -6.88 12.34 44.97 0.55 -6.32 16 27 H 0.29 12.39 8.30 -92.71 -0.77 11.62 16 28 H 0.12 5.78 6.19 -2.91 -0.02 5.76 16 29 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 30 H 0.12 4.59 8.06 -2.91 -0.02 4.56 16 31 H 0.15 4.24 8.06 -2.91 -0.02 4.22 16 32 H 0.17 3.01 8.06 -2.91 -0.02 2.99 16 33 H 0.16 3.97 7.15 -2.92 -0.02 3.95 16 Total: -1.00 -51.95 305.35 9.11 -42.84 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 1.20 Total: 15.72 kcal Atomic # 6 Polarization: -33.59 SS G_CDS: 2.06 Total: -31.53 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.24 Total: -37.06 kcal Atomic # 9 Polarization: -30.76 SS G_CDS: 3.58 Total: -27.18 kcal Atomic # 14 Polarization: 35.18 SS G_CDS: 2.03 Total: 37.21 kcal Total: -51.95 9.11 -42.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241125994.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.815 kcal (2) G-P(sol) polarization free energy of solvation -51.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds