Wall clock time and date at job start Tue Mar 31 2020 15:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30795 * 1 3 3 Si 1.86801 * 120.00273 * 2 1 4 4 H 1.48502 * 109.47119 * 239.99772 * 3 2 1 5 5 H 1.48504 * 109.46597 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46999 * 119.99766 * 3 2 1 7 7 C 1.40064 * 119.99582 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99573 * 200.97158 * 7 2 1 9 9 C 1.40780 * 120.00410 * 20.96865 * 7 2 1 10 10 C 1.41037 * 120.34605 * 35.51484 * 9 7 2 11 11 F 1.35097 * 120.09820 * 359.97438 * 10 9 7 12 12 C 1.37724 * 119.79962 * 179.97438 * 10 9 7 13 13 C 1.38817 * 120.52465 * 359.97438 * 12 10 9 14 14 C 1.38126 * 120.72072 * 359.72858 * 13 12 10 15 15 C 1.39080 * 120.17357 * 0.55448 * 14 13 12 16 16 C 1.47852 * 120.26396 * 179.72491 * 15 14 13 17 17 C 1.39688 * 120.11959 * 256.14755 * 16 15 14 18 18 C 1.37851 * 119.87743 * 180.29533 * 17 16 15 19 19 C 1.38662 * 120.11710 * 359.43049 * 18 17 16 20 20 F 1.35107 * 119.87443 * 180.27232 * 19 18 17 21 21 C 1.38620 * 120.24880 * 0.25944 * 19 18 17 22 22 C 1.37888 * 120.12177 * 0.03461 * 21 19 18 23 23 C 1.50707 * 120.06116 * 180.02562 * 22 21 19 24 24 F 1.39903 * 109.46880 * 358.55556 * 23 22 21 25 25 F 1.39894 * 109.46635 * 118.55044 * 23 22 21 26 26 F 1.39896 * 109.47237 * 238.55474 * 23 22 21 27 27 H 0.96997 * 119.99940 * 0.02562 * 1 2 3 28 28 H 1.07998 * 119.73882 * 179.97438 * 12 10 9 29 29 H 1.08010 * 119.64207 * 180.02562 * 13 12 10 30 30 H 1.07998 * 119.91693 * 180.28141 * 14 13 12 31 31 H 1.08002 * 120.06123 * 0.02648 * 17 16 15 32 32 H 1.07998 * 119.93669 * 179.70977 * 18 17 16 33 33 H 1.07999 * 119.93784 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 3.0958 1.6963 -1.2125 5 1 1.2770 2.7464 -0.0006 6 1 3.0957 1.6963 1.2126 7 6 2.0082 -1.2130 0.0005 8 1 3.0346 -1.2439 0.3354 9 6 1.3742 -2.3921 -0.4352 10 6 0.4429 -2.3509 -1.4936 11 9 0.1532 -1.1769 -2.0959 12 6 -0.1703 -3.5113 -1.9111 13 6 0.1212 -4.7225 -1.2988 14 6 1.0343 -4.7886 -0.2645 15 6 1.6664 -3.6341 0.1847 16 6 2.6396 -3.7017 1.2957 17 6 2.2749 -3.2728 2.5741 18 6 3.1881 -3.3323 3.6050 19 6 4.4630 -3.8278 3.3773 20 9 5.3524 -3.8890 4.3925 21 6 4.8283 -4.2608 2.1122 22 6 3.9248 -4.2001 1.0724 23 6 4.3232 -4.6718 -0.3025 24 9 5.6572 -5.0929 -0.2825 25 9 3.5031 -5.7385 -0.6852 26 9 4.1792 -3.6217 -1.2156 27 1 -0.4850 0.8400 -0.0004 28 1 -0.8836 -3.4786 -2.7214 29 1 -0.3678 -5.6239 -1.6381 30 1 1.2546 -5.7386 0.1995 31 1 1.2805 -2.8913 2.7536 32 1 2.9086 -2.9966 4.5927 33 1 5.8225 -4.6461 1.9406 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241126269.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:12 Heat of formation + Delta-G solvation = -203.195106 kcal Electronic energy + Delta-G solvation = -28568.619741 eV Core-core repulsion = 23779.645051 eV Total energy + Delta-G solvation = -4788.974690 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.08981 -49.91330 -48.96308 -48.63078 -48.50547 -40.50824 -38.62317 -35.55858 -33.31938 -32.93487 -31.42056 -29.72886 -27.31733 -26.87921 -24.26304 -23.34823 -22.81772 -21.83135 -19.67167 -19.42212 -19.39451 -19.27936 -17.99126 -17.33304 -17.22519 -17.04320 -16.62072 -16.40956 -16.13511 -15.99971 -15.68894 -15.44682 -15.38003 -14.96595 -14.88164 -14.69888 -14.61588 -14.52992 -14.34635 -13.98020 -13.66193 -13.43729 -13.31840 -13.06256 -13.04508 -12.81500 -12.43542 -12.37970 -12.10047 -11.91080 -11.34356 -10.94604 -10.34112 -9.67599 -9.36904 -9.05962 -8.72972 -6.41039 -0.17777 0.07460 0.73115 0.93436 1.35513 1.44117 1.47986 1.70056 2.17857 2.34306 2.69006 2.70094 3.04632 3.32926 3.41230 3.48874 3.77528 3.82608 3.99504 4.19833 4.30159 4.34778 4.49011 4.64454 4.82580 4.88715 4.93577 5.06534 5.15039 5.26696 5.38485 5.60264 5.66436 5.77714 5.95159 5.96058 6.22014 6.45635 6.81344 6.90764 8.27085 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.011223 B = 0.006652 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2494.307413 B = 4208.405416 C = 5351.117398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.048 3.952 3 Si 0.959 3.041 4 H -0.269 1.269 5 H -0.269 1.269 6 H -0.253 1.253 7 C -0.479 4.479 8 H 0.077 0.923 9 C 0.097 3.903 10 C -0.002 4.002 11 F -0.158 7.158 12 C -0.132 4.132 13 C -0.208 4.208 14 C -0.071 4.071 15 C -0.183 4.183 16 C 0.047 3.953 17 C -0.080 4.080 18 C -0.108 4.108 19 C 0.080 3.920 20 F -0.135 7.135 21 C -0.107 4.107 22 C -0.172 4.172 23 C 0.514 3.486 24 F -0.177 7.177 25 F -0.173 7.173 26 F -0.181 7.181 27 H 0.289 0.711 28 H 0.119 0.881 29 H 0.135 0.865 30 H 0.123 0.877 31 H 0.139 0.861 32 H 0.170 0.830 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.746 -6.531 5.301 10.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.171 4.171 3 Si 0.781 3.219 4 H -0.194 1.194 5 H -0.193 1.193 6 H -0.177 1.177 7 C -0.507 4.507 8 H 0.095 0.905 9 C 0.093 3.907 10 C -0.023 4.023 11 F -0.137 7.137 12 C -0.151 4.151 13 C -0.227 4.227 14 C -0.089 4.089 15 C -0.185 4.185 16 C 0.046 3.954 17 C -0.098 4.098 18 C -0.127 4.127 19 C 0.061 3.939 20 F -0.113 7.113 21 C -0.125 4.125 22 C -0.174 4.174 23 C 0.460 3.540 24 F -0.158 7.158 25 F -0.155 7.155 26 F -0.162 7.162 27 H 0.100 0.900 28 H 0.137 0.863 29 H 0.152 0.848 30 H 0.141 0.859 31 H 0.157 0.843 32 H 0.187 0.813 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 5.559 -6.349 5.299 9.965 hybrid contribution 0.173 1.082 -0.568 1.235 sum 5.732 -5.267 4.731 9.109 Atomic orbital electron populations 1.69770 1.08929 1.31012 1.32782 1.26467 0.95132 1.03793 0.91672 0.85573 0.79276 0.77041 0.80043 1.19393 1.19299 1.17721 1.19295 0.99257 0.92104 1.40087 0.90473 1.17583 0.90497 0.93124 0.89459 1.18166 1.05520 0.80680 0.97900 1.91277 1.92697 1.47598 1.82141 1.20976 1.00463 0.92374 1.01288 1.20485 1.04393 0.96500 1.01304 1.20933 0.95450 0.96330 0.96196 1.18554 1.05826 0.93705 1.00390 1.18502 0.90791 0.92203 0.93858 1.21249 1.00613 0.97451 0.90514 1.21489 0.91150 0.98399 1.01644 1.17452 0.88213 1.03734 0.84532 1.91505 1.67304 1.94533 1.57998 1.20872 1.00777 1.00304 0.90580 1.19924 0.96223 1.08918 0.92286 1.18126 0.74201 0.75267 0.86449 1.93131 1.35426 1.90465 1.96827 1.93195 1.72444 1.57316 1.92496 1.93250 1.95387 1.57874 1.69687 0.90029 0.86312 0.84751 0.85908 0.84295 0.81284 0.81933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -41.16 11.09 21.85 0.24 -40.92 16 2 C 0.05 2.37 4.48 85.29 0.38 2.75 16 3 Si 0.96 38.45 29.61 68.60 2.03 40.48 16 4 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 5 H -0.27 -10.26 7.11 99.48 0.71 -9.56 16 6 H -0.25 -9.59 7.11 99.48 0.71 -8.89 16 7 C -0.48 -24.31 8.12 23.33 0.19 -24.12 16 8 H 0.08 3.88 7.57 -2.91 -0.02 3.86 16 9 C 0.10 4.83 5.41 -21.07 -0.11 4.72 16 10 C 0.00 -0.13 6.69 22.83 0.15 0.02 16 11 F -0.16 -8.58 14.20 44.97 0.64 -7.94 16 12 C -0.13 -5.82 9.99 22.29 0.22 -5.60 16 13 C -0.21 -8.15 10.02 22.38 0.22 -7.92 16 14 C -0.07 -2.80 7.83 22.45 0.18 -2.62 16 15 C -0.18 -7.90 3.79 -19.63 -0.07 -7.98 16 16 C 0.05 1.75 4.20 -20.04 -0.08 1.67 16 17 C -0.08 -2.64 9.66 22.53 0.22 -2.42 16 18 C -0.11 -2.88 10.01 22.28 0.22 -2.66 16 19 C 0.08 2.15 7.31 22.46 0.16 2.31 16 20 F -0.13 -3.41 17.26 44.97 0.78 -2.64 16 21 C -0.11 -3.02 9.40 22.28 0.21 -2.81 16 22 C -0.17 -5.83 5.40 -19.61 -0.11 -5.93 16 23 C 0.51 17.89 2.89 71.24 0.21 18.10 16 24 F -0.18 -5.38 15.97 44.97 0.72 -4.66 16 25 F -0.17 -6.02 14.63 44.97 0.66 -5.36 16 26 F -0.18 -7.41 16.41 44.97 0.74 -6.67 16 27 H 0.29 13.74 8.30 -92.71 -0.77 12.97 16 28 H 0.12 4.69 8.06 -2.91 -0.02 4.67 16 29 H 0.13 4.32 8.06 -2.91 -0.02 4.29 16 30 H 0.12 4.22 7.64 -2.91 -0.02 4.19 16 31 H 0.14 4.67 8.06 -2.91 -0.02 4.65 16 32 H 0.17 3.38 8.06 -2.91 -0.02 3.35 16 33 H 0.16 3.86 7.15 -2.91 -0.02 3.84 16 Total: -1.00 -56.12 308.56 8.98 -47.13 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 1.19 Total: 13.08 kcal Atomic # 6 Polarization: -34.49 SS G_CDS: 1.99 Total: -32.50 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 0.24 Total: -40.92 kcal Atomic # 9 Polarization: -30.81 SS G_CDS: 3.53 Total: -27.28 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 2.03 Total: 40.48 kcal Total: -56.12 8.98 -47.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241126269.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.061 kcal (2) G-P(sol) polarization free energy of solvation -56.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds