Wall clock time and date at job start Tue Mar 31 2020 15:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86794 * 119.99975 * 2 1 4 4 H 1.48501 * 109.47150 * 265.31405 * 3 2 1 5 5 H 1.48496 * 109.47368 * 25.31622 * 3 2 1 6 6 H 1.48504 * 109.46839 * 145.31506 * 3 2 1 7 7 C 1.39991 * 119.99718 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00306 * 352.09568 * 7 2 1 9 9 C 1.40935 * 119.99827 * 172.09785 * 7 2 1 10 10 C 1.40954 * 120.13256 * 319.64770 * 9 7 2 11 11 C 1.36181 * 119.89912 * 179.97438 * 10 9 7 12 12 C 1.40038 * 120.18895 * 0.02562 * 11 10 9 13 13 C 1.47961 * 119.86929 * 179.97438 * 12 11 10 14 14 C 1.39651 * 120.11637 * 58.89660 * 13 12 11 15 15 C 1.37849 * 119.87986 * 179.97438 * 14 13 12 16 16 C 1.38658 * 120.12069 * 0.02562 * 15 14 13 17 17 F 1.35101 * 119.88305 * 180.02562 * 16 15 14 18 18 C 1.38619 * 120.23693 * 359.97438 * 16 15 14 19 19 C 1.37894 * 120.11623 * 359.74292 * 18 16 15 20 20 C 1.50698 * 120.06351 * 180.27060 * 19 18 16 21 21 F 1.39908 * 109.46983 * 353.00497 * 20 19 18 22 22 F 1.39904 * 109.46856 * 112.99801 * 20 19 18 23 23 F 1.39892 * 109.47766 * 232.99980 * 20 19 18 24 24 C 1.39804 * 120.27153 * 359.97438 * 12 11 10 25 25 C 1.36565 * 120.09386 * 0.02562 * 24 12 11 26 26 F 1.35097 * 120.09118 * 180.02562 * 25 24 12 27 27 H 0.97001 * 119.99979 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.05010 * 0.03073 * 10 9 7 29 29 H 1.08004 * 119.90741 * 180.27754 * 11 10 9 30 30 H 1.08002 * 120.05974 * 0.02562 * 14 13 12 31 31 H 1.08003 * 119.93924 * 180.02562 * 15 14 13 32 32 H 1.08001 * 119.94401 * 180.02562 * 18 16 15 33 33 H 1.07996 * 119.95602 * 180.02562 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.5888 1.9892 -1.3954 5 1 1.3938 2.6792 0.5987 6 1 3.4868 1.4707 0.7968 7 6 2.0082 -1.2124 -0.0005 8 1 1.4759 -2.1433 0.1277 9 6 3.4075 -1.2181 -0.1683 10 6 4.0123 -0.3481 -1.0979 11 6 5.3648 -0.3572 -1.2558 12 6 6.1564 -1.2289 -0.4978 13 6 7.6253 -1.2333 -0.6755 14 6 8.3611 -0.0666 -0.4572 15 6 9.7294 -0.0764 -0.6237 16 6 10.3754 -1.2417 -1.0077 17 9 11.7167 -1.2460 -1.1689 18 6 9.6499 -2.4026 -1.2256 19 6 8.2814 -2.4053 -1.0563 20 6 7.4946 -3.6696 -1.2877 21 9 8.3376 -4.6534 -1.8158 22 9 6.9609 -4.1155 -0.0738 23 9 6.4550 -3.4139 -2.1882 24 6 5.5645 -2.0950 0.4263 25 6 4.2092 -2.0953 0.5939 26 9 3.6373 -2.9319 1.4872 27 1 -0.4850 0.8401 0.0004 28 1 3.4040 0.3254 -1.6833 29 1 5.8288 0.3125 -1.9648 30 1 7.8590 0.8415 -0.1577 31 1 10.2994 0.8253 -0.4547 32 1 10.1579 -3.3077 -1.5242 33 1 6.1799 -2.7648 1.0085 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241126325.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:30 Heat of formation + Delta-G solvation = -206.402292 kcal Electronic energy + Delta-G solvation = -27824.619501 eV Core-core repulsion = 23035.505737 eV Total energy + Delta-G solvation = -4789.113764 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.21636 -49.94660 -49.38290 -48.76053 -48.63136 -40.67206 -39.08960 -35.73504 -33.54351 -33.07457 -31.44898 -30.77062 -27.61288 -26.54384 -24.06609 -23.90342 -22.84986 -22.08510 -19.82554 -19.66585 -19.52586 -19.35167 -18.43888 -17.44189 -17.31666 -17.04403 -16.87878 -16.61261 -16.34057 -16.17890 -15.97627 -15.55879 -15.41927 -15.14867 -14.95107 -14.82643 -14.79426 -14.64807 -14.42724 -14.36371 -13.88979 -13.73821 -13.59276 -13.29598 -13.04611 -12.76812 -12.62484 -12.25243 -12.07572 -11.87624 -11.67923 -11.05845 -10.41589 -10.01839 -9.60397 -9.24100 -8.91532 -6.63883 -0.35101 -0.05867 0.53535 0.62182 1.26853 1.39084 1.49432 1.61295 2.09864 2.24126 2.49293 2.62586 2.95209 3.15245 3.28068 3.36465 3.51711 3.75943 3.90192 3.95214 4.10846 4.23269 4.31360 4.47925 4.65993 4.75692 4.81044 4.86644 5.02926 5.15369 5.22131 5.33894 5.50268 5.66177 5.67814 5.75300 5.96476 6.20930 6.52627 6.63680 8.16248 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.017479 B = 0.004505 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.529362 B = 6213.293647 C = 7221.325553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.044 3.956 3 Si 0.967 3.033 4 H -0.236 1.236 5 H -0.276 1.276 6 H -0.248 1.248 7 C -0.481 4.481 8 H 0.048 0.952 9 C 0.059 3.941 10 C -0.216 4.216 11 C -0.048 4.048 12 C -0.164 4.164 13 C 0.022 3.978 14 C -0.082 4.082 15 C -0.101 4.101 16 C 0.084 3.916 17 F -0.135 7.135 18 C -0.105 4.105 19 C -0.166 4.166 20 C 0.508 3.492 21 F -0.176 7.176 22 F -0.180 7.180 23 F -0.178 7.178 24 C -0.098 4.098 25 C -0.028 4.028 26 F -0.167 7.167 27 H 0.297 0.703 28 H 0.123 0.877 29 H 0.148 0.852 30 H 0.165 0.835 31 H 0.178 0.822 32 H 0.160 0.840 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.433 3.106 -3.270 20.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.170 4.170 3 Si 0.787 3.213 4 H -0.160 1.160 5 H -0.202 1.202 6 H -0.171 1.171 7 C -0.511 4.511 8 H 0.066 0.934 9 C 0.055 3.945 10 C -0.235 4.235 11 C -0.066 4.066 12 C -0.165 4.165 13 C 0.021 3.979 14 C -0.100 4.100 15 C -0.119 4.119 16 C 0.065 3.935 17 F -0.114 7.114 18 C -0.123 4.123 19 C -0.167 4.167 20 C 0.454 3.546 21 F -0.158 7.158 22 F -0.161 7.161 23 F -0.159 7.159 24 C -0.117 4.117 25 C -0.048 4.048 26 F -0.147 7.147 27 H 0.108 0.892 28 H 0.140 0.860 29 H 0.166 0.834 30 H 0.183 0.817 31 H 0.195 0.805 32 H 0.177 0.823 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 20.138 3.106 -3.245 20.633 hybrid contribution -0.835 -0.632 0.293 1.087 sum 19.303 2.474 -2.952 19.684 Atomic orbital electron populations 1.69664 1.09371 1.31847 1.36902 1.26949 0.95601 1.04342 0.90155 0.85496 0.79153 0.75293 0.81347 1.16024 1.20205 1.17130 1.19281 0.91447 0.94928 1.45409 0.93402 1.18014 0.93275 0.92307 0.90873 1.20905 0.95748 1.05313 1.01509 1.20805 0.92365 0.96356 0.97053 1.18074 0.91269 1.03380 1.03780 1.18567 0.91769 0.92645 0.94910 1.21430 0.92860 0.97790 0.97888 1.21596 0.94763 0.98151 0.97386 1.17578 0.77402 0.94815 1.03731 1.91526 1.29360 1.97144 1.93334 1.20887 0.91843 0.99678 0.99927 1.19809 0.94229 0.92658 1.10016 1.18332 0.77881 0.84364 0.74071 1.93149 1.70784 1.65079 1.86774 1.93153 1.87073 1.90665 1.45204 1.93237 1.60311 1.94078 1.68305 1.21048 0.92325 0.98867 0.99427 1.17862 0.91615 0.99627 0.95682 1.91293 1.86067 1.70466 1.66827 0.89244 0.85971 0.83414 0.81732 0.80491 0.82282 0.84642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.36 13.93 21.84 0.30 -46.05 16 2 C 0.04 2.29 5.48 85.27 0.47 2.76 16 3 Si 0.97 39.46 24.62 68.60 1.69 41.15 16 4 H -0.24 -8.56 6.49 99.48 0.65 -7.92 16 5 H -0.28 -10.66 7.11 99.48 0.71 -9.95 16 6 H -0.25 -10.08 7.04 99.48 0.70 -9.38 16 7 C -0.48 -27.24 9.20 23.36 0.21 -27.03 16 8 H 0.05 3.04 8.06 -2.91 -0.02 3.02 16 9 C 0.06 2.94 4.94 -21.23 -0.10 2.83 16 10 C -0.22 -9.12 7.11 22.46 0.16 -8.96 16 11 C -0.05 -1.66 9.58 22.23 0.21 -1.44 16 12 C -0.16 -5.60 3.97 -19.89 -0.08 -5.68 16 13 C 0.02 0.57 5.34 -20.03 -0.11 0.46 16 14 C -0.08 -1.57 9.66 22.52 0.22 -1.35 16 15 C -0.10 -1.53 10.01 22.28 0.22 -1.31 16 16 C 0.08 1.53 7.31 22.46 0.16 1.69 16 17 F -0.14 -2.48 17.26 44.97 0.78 -1.70 16 18 C -0.10 -2.16 9.40 22.28 0.21 -1.95 16 19 C -0.17 -4.26 5.41 -19.62 -0.11 -4.37 16 20 C 0.51 15.05 2.79 71.24 0.20 15.25 16 21 F -0.18 -4.65 16.00 44.97 0.72 -3.93 16 22 F -0.18 -5.89 13.44 44.97 0.60 -5.29 16 23 F -0.18 -6.11 15.92 44.97 0.72 -5.39 16 24 C -0.10 -3.93 7.64 22.26 0.17 -3.76 16 25 C -0.03 -1.35 7.26 22.60 0.16 -1.19 16 26 F -0.17 -8.61 16.82 44.97 0.76 -7.85 16 27 H 0.30 14.37 8.30 -92.71 -0.77 13.60 16 28 H 0.12 4.98 5.15 -2.91 -0.02 4.97 16 29 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 30 H 0.17 2.56 8.06 -2.91 -0.02 2.53 16 31 H 0.18 1.52 8.06 -2.91 -0.02 1.49 16 32 H 0.16 2.81 7.18 -2.91 -0.02 2.79 16 33 H 0.14 5.07 5.84 -2.91 -0.02 5.05 16 Total: -1.00 -61.74 302.40 8.71 -53.03 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 1.14 Total: 10.08 kcal Atomic # 6 Polarization: -36.04 SS G_CDS: 2.01 Total: -34.03 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: 0.30 Total: -46.05 kcal Atomic # 9 Polarization: -27.74 SS G_CDS: 3.57 Total: -24.17 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 1.69 Total: 41.15 kcal Total: -61.74 8.71 -53.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241126325.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.369 kcal (2) G-P(sol) polarization free energy of solvation -61.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds