Wall clock time and date at job start Tue Mar 31 2020 15:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30801 * 1 3 3 Si 1.86798 * 119.99945 * 2 1 4 4 H 1.48498 * 109.47330 * 275.39758 * 3 2 1 5 5 H 1.48504 * 109.47051 * 35.39195 * 3 2 1 6 6 H 1.48498 * 109.47441 * 155.39202 * 3 2 1 7 7 C 1.40035 * 120.00242 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99512 * 341.89337 * 7 2 1 9 9 C 1.40808 * 120.00240 * 161.89404 * 7 2 1 10 10 C 1.40790 * 120.30212 * 329.82210 * 9 7 2 11 11 C 1.36349 * 120.01988 * 179.97438 * 10 9 7 12 12 C 1.39223 * 120.65579 * 0.02562 * 11 10 9 13 13 F 1.35102 * 119.69136 * 179.97438 * 12 11 10 14 14 C 1.38376 * 120.61344 * 359.96339 * 12 11 10 15 15 C 1.39081 * 119.95524 * 0.02562 * 14 12 11 16 16 C 1.47843 * 120.31893 * 179.97438 * 15 14 12 17 17 C 1.39653 * 120.16313 * 64.99819 * 16 15 14 18 18 C 1.37881 * 119.87363 * 179.97438 * 17 16 15 19 19 C 1.38451 * 120.21164 * 359.97438 * 18 17 16 20 20 C 1.38301 * 120.32867 * 0.02696 * 19 18 17 21 21 C 1.50693 * 119.94111 * 180.02562 * 20 19 18 22 22 F 1.39906 * 109.46907 * 359.97438 * 21 20 19 23 23 F 1.39899 * 109.47583 * 119.99319 * 21 20 19 24 24 F 1.39900 * 109.46903 * 239.99679 * 21 20 19 25 25 C 1.38220 * 120.11992 * 359.73251 * 20 19 18 26 26 F 1.35099 * 120.10683 * 180.27441 * 25 20 19 27 27 H 0.97003 * 120.00344 * 359.97438 * 1 2 3 28 28 H 1.07998 * 119.99045 * 359.96105 * 10 9 7 29 29 H 1.07997 * 119.66822 * 180.02562 * 11 10 9 30 30 H 1.08001 * 120.01865 * 179.75018 * 14 12 11 31 31 H 1.08007 * 120.06063 * 0.02562 * 17 16 15 32 32 H 1.08007 * 119.89786 * 180.02562 * 18 17 16 33 33 H 1.07995 * 119.83745 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 2.3755 2.1123 -1.3938 5 1 1.5010 2.6171 0.8109 6 1 3.5919 1.4101 0.5830 7 6 2.0082 -1.2127 -0.0005 8 1 1.5083 -2.1250 0.2898 9 6 3.3640 -1.2427 -0.3795 10 6 3.8610 -0.3147 -1.3144 11 6 5.1750 -0.3487 -1.6768 12 6 6.0376 -1.2957 -1.1314 13 9 7.3359 -1.3120 -1.5049 14 6 5.5776 -2.2202 -0.2103 15 6 4.2421 -2.2084 0.1777 16 6 3.7419 -3.1928 1.1609 17 6 4.2137 -3.1739 2.4751 18 6 3.7428 -4.0944 3.3872 19 6 2.8034 -5.0367 3.0044 20 6 2.3302 -5.0632 1.7051 21 6 1.3074 -6.0923 1.2980 22 9 0.9965 -6.9007 2.3967 23 9 0.1494 -5.4473 0.8506 24 9 1.8272 -6.8846 0.2688 25 6 2.7893 -4.1437 0.7808 26 9 2.3228 -4.1664 -0.4869 27 1 -0.4851 0.8400 0.0004 28 1 3.2013 0.4241 -1.7447 29 1 5.5503 0.3662 -2.3941 30 1 6.2542 -2.9531 0.2036 31 1 4.9456 -2.4391 2.7766 32 1 4.1071 -4.0799 4.4039 33 1 2.4384 -5.7546 3.7238 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241156682.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:31 Heat of formation + Delta-G solvation = -201.751085 kcal Electronic energy + Delta-G solvation = -27930.651185 eV Core-core repulsion = 23141.739112 eV Total energy + Delta-G solvation = -4788.912073 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.98862 -48.48075 -47.74694 -47.46528 -47.36464 -39.09070 -37.56657 -33.82539 -32.57387 -31.10380 -30.40409 -28.71186 -25.83376 -25.18947 -23.09143 -22.13495 -21.43402 -20.37673 -18.32565 -18.27211 -18.14101 -17.78033 -16.92236 -16.58076 -15.76116 -15.63115 -15.20794 -14.84323 -14.69393 -14.49661 -14.32002 -14.23693 -14.11083 -13.85271 -13.61756 -13.55845 -13.42105 -13.15605 -12.90708 -12.82040 -12.51135 -12.36470 -12.10835 -11.81178 -11.59430 -11.18248 -11.05907 -10.73103 -10.47987 -10.32025 -9.81915 -9.41754 -9.01640 -8.52984 -7.96711 -7.64567 -7.21434 -4.73092 1.05710 1.31797 2.19038 2.31613 2.82950 2.93136 3.03989 3.12890 3.61846 3.75612 3.85863 4.11897 4.18021 4.47031 4.61625 4.97548 5.00849 5.14818 5.27630 5.38014 5.53200 5.69811 5.76028 5.96448 6.13763 6.18346 6.33966 6.37926 6.48058 6.57819 6.83493 6.89445 7.03778 7.19174 7.29035 7.51777 7.81014 8.06304 8.32647 8.47675 9.78265 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.012378 B = 0.005502 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.504104 B = 5087.473284 C = 6196.366865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.083 3.917 3 Si 0.909 3.091 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.241 1.241 7 C -0.423 4.423 8 H 0.098 0.902 9 C 0.104 3.896 10 C -0.207 4.207 11 C -0.091 4.091 12 C -0.053 4.053 13 F -0.168 7.168 14 C -0.073 4.073 15 C -0.169 4.169 16 C -0.014 4.014 17 C -0.060 4.060 18 C -0.135 4.135 19 C -0.067 4.067 20 C -0.227 4.227 21 C 0.513 3.487 22 F -0.180 7.180 23 F -0.170 7.170 24 F -0.177 7.177 25 C 0.162 3.838 26 F -0.113 7.113 27 H 0.291 0.709 28 H 0.112 0.888 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.138 0.862 32 H 0.135 0.865 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.621 -5.772 5.961 9.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.139 4.139 3 Si 0.734 3.266 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.164 1.164 7 C -0.450 4.450 8 H 0.116 0.884 9 C 0.101 3.899 10 C -0.226 4.226 11 C -0.110 4.110 12 C -0.073 4.073 13 F -0.148 7.148 14 C -0.092 4.092 15 C -0.171 4.171 16 C -0.015 4.015 17 C -0.078 4.078 18 C -0.153 4.153 19 C -0.085 4.085 20 C -0.229 4.229 21 C 0.459 3.541 22 F -0.161 7.161 23 F -0.151 7.151 24 F -0.158 7.158 25 C 0.142 3.858 26 F -0.091 7.091 27 H 0.102 0.898 28 H 0.130 0.870 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.156 0.844 32 H 0.153 0.847 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.298 -5.717 5.895 8.849 hybrid contribution -0.008 0.593 -0.462 0.752 sum 3.290 -5.124 5.432 8.160 Atomic orbital electron populations 1.69678 1.08244 1.30925 1.31554 1.26298 0.94809 1.01994 0.90836 0.86341 0.81506 0.79432 0.79315 1.19170 1.21225 1.16358 1.19572 0.92783 0.96414 1.36213 0.88405 1.17599 0.92624 0.90264 0.89462 1.20622 0.94930 1.04191 1.02890 1.20425 0.93823 0.97375 0.99402 1.16990 0.78505 1.04440 1.07324 1.91317 1.35168 1.96839 1.91453 1.20550 0.94829 0.97157 0.96676 1.17979 0.92411 1.02793 1.03876 1.18662 0.94842 0.93545 0.94432 1.21446 0.98138 0.97158 0.91084 1.21012 0.98314 0.95798 1.00138 1.20762 0.95966 0.98710 0.93074 1.19922 1.04682 1.00986 0.97348 1.18102 0.80914 0.80478 0.74607 1.93132 1.93700 1.75123 1.54159 1.93265 1.51207 1.81215 1.89401 1.93212 1.86620 1.75819 1.60153 1.17482 0.94642 0.94453 0.79234 1.91582 1.86393 1.95330 1.35839 0.89847 0.87010 0.87405 0.87193 0.84416 0.84733 0.84325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.47 13.93 55.55 0.77 -18.70 16 2 C 0.08 2.02 5.40 -17.32 -0.09 1.92 16 3 Si 0.91 19.01 24.52 -169.99 -4.17 14.84 16 4 H -0.27 -5.38 6.71 56.52 0.38 -5.01 16 5 H -0.29 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.24 -5.11 6.87 56.52 0.39 -4.72 16 7 C -0.42 -10.58 8.60 -37.94 -0.33 -10.91 16 8 H 0.10 2.61 5.72 -52.48 -0.30 2.31 16 9 C 0.10 2.44 4.99 -106.55 -0.53 1.91 16 10 C -0.21 -4.64 7.11 -39.30 -0.28 -4.92 16 11 C -0.09 -1.90 9.94 -39.90 -0.40 -2.30 16 12 C -0.05 -1.11 7.31 -39.16 -0.29 -1.39 16 13 F -0.17 -3.41 17.26 2.25 0.04 -3.37 16 14 C -0.07 -1.48 9.70 -39.22 -0.38 -1.86 16 15 C -0.17 -3.61 5.06 -104.25 -0.53 -4.14 16 16 C -0.01 -0.27 4.69 -104.83 -0.49 -0.76 16 17 C -0.06 -0.92 9.75 -39.18 -0.38 -1.31 16 18 C -0.13 -1.72 10.03 -39.63 -0.40 -2.12 16 19 C -0.07 -0.92 9.43 -39.48 -0.37 -1.29 16 20 C -0.23 -3.83 5.37 -104.61 -0.56 -4.39 16 21 C 0.51 8.44 3.02 36.00 0.11 8.55 16 22 F -0.18 -2.58 15.96 2.25 0.04 -2.54 16 23 F -0.17 -3.12 17.03 2.25 0.04 -3.08 16 24 F -0.18 -2.96 17.06 2.25 0.04 -2.92 16 25 C 0.16 3.17 5.78 -38.98 -0.23 2.95 16 26 F -0.11 -2.50 14.86 2.25 0.03 -2.46 16 27 H 0.29 6.49 8.30 -40.82 -0.34 6.15 16 28 H 0.11 2.45 4.76 -52.49 -0.25 2.20 16 29 H 0.11 1.98 8.06 -52.49 -0.42 1.55 16 30 H 0.11 1.95 8.06 -52.49 -0.42 1.52 16 31 H 0.14 1.86 8.06 -52.48 -0.42 1.43 16 32 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 33 H 0.14 1.51 7.14 -52.49 -0.37 1.14 16 LS Contribution 305.64 15.07 4.61 4.61 Total: -1.00 -26.09 305.64 -5.53 -31.63 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -1.79 Total: 2.03 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -5.14 Total: -20.04 kcal Atomic # 7 Polarization: -19.47 SS G_CDS: 0.77 Total: -18.70 kcal Atomic # 9 Polarization: -14.55 SS G_CDS: 0.19 Total: -14.37 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.17 Total: 14.84 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -26.09 -5.53 -31.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241156682.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.124 kcal (2) G-P(sol) polarization free energy of solvation -26.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds