Wall clock time and date at job start Tue Mar 31 2020 15:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30801 * 1 3 3 Si 1.86798 * 119.99945 * 2 1 4 4 H 1.48498 * 109.47330 * 275.39758 * 3 2 1 5 5 H 1.48504 * 109.47051 * 35.39195 * 3 2 1 6 6 H 1.48498 * 109.47441 * 155.39202 * 3 2 1 7 7 C 1.40035 * 120.00242 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99512 * 341.89337 * 7 2 1 9 9 C 1.40808 * 120.00240 * 161.89404 * 7 2 1 10 10 C 1.40790 * 120.30212 * 329.82210 * 9 7 2 11 11 C 1.36349 * 120.01988 * 179.97438 * 10 9 7 12 12 C 1.39223 * 120.65579 * 0.02562 * 11 10 9 13 13 F 1.35102 * 119.69136 * 179.97438 * 12 11 10 14 14 C 1.38376 * 120.61344 * 359.96339 * 12 11 10 15 15 C 1.39081 * 119.95524 * 0.02562 * 14 12 11 16 16 C 1.47843 * 120.31893 * 179.97438 * 15 14 12 17 17 C 1.39653 * 120.16313 * 64.99819 * 16 15 14 18 18 C 1.37881 * 119.87363 * 179.97438 * 17 16 15 19 19 C 1.38451 * 120.21164 * 359.97438 * 18 17 16 20 20 C 1.38301 * 120.32867 * 0.02696 * 19 18 17 21 21 C 1.50693 * 119.94111 * 180.02562 * 20 19 18 22 22 F 1.39906 * 109.46907 * 359.97438 * 21 20 19 23 23 F 1.39899 * 109.47583 * 119.99319 * 21 20 19 24 24 F 1.39900 * 109.46903 * 239.99679 * 21 20 19 25 25 C 1.38220 * 120.11992 * 359.73251 * 20 19 18 26 26 F 1.35099 * 120.10683 * 180.27441 * 25 20 19 27 27 H 0.97003 * 120.00344 * 359.97438 * 1 2 3 28 28 H 1.07998 * 119.99045 * 359.96105 * 10 9 7 29 29 H 1.07997 * 119.66822 * 180.02562 * 11 10 9 30 30 H 1.08001 * 120.01865 * 179.75018 * 14 12 11 31 31 H 1.08007 * 120.06063 * 0.02562 * 17 16 15 32 32 H 1.08007 * 119.89786 * 180.02562 * 18 17 16 33 33 H 1.07995 * 119.83745 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 2.3755 2.1123 -1.3938 5 1 1.5010 2.6171 0.8109 6 1 3.5919 1.4101 0.5830 7 6 2.0082 -1.2127 -0.0005 8 1 1.5083 -2.1250 0.2898 9 6 3.3640 -1.2427 -0.3795 10 6 3.8610 -0.3147 -1.3144 11 6 5.1750 -0.3487 -1.6768 12 6 6.0376 -1.2957 -1.1314 13 9 7.3359 -1.3120 -1.5049 14 6 5.5776 -2.2202 -0.2103 15 6 4.2421 -2.2084 0.1777 16 6 3.7419 -3.1928 1.1609 17 6 4.2137 -3.1739 2.4751 18 6 3.7428 -4.0944 3.3872 19 6 2.8034 -5.0367 3.0044 20 6 2.3302 -5.0632 1.7051 21 6 1.3074 -6.0923 1.2980 22 9 0.9965 -6.9007 2.3967 23 9 0.1494 -5.4473 0.8506 24 9 1.8272 -6.8846 0.2688 25 6 2.7893 -4.1437 0.7808 26 9 2.3228 -4.1664 -0.4869 27 1 -0.4851 0.8400 0.0004 28 1 3.2013 0.4241 -1.7447 29 1 5.5503 0.3662 -2.3941 30 1 6.2542 -2.9531 0.2036 31 1 4.9456 -2.4391 2.7766 32 1 4.1071 -4.0799 4.4039 33 1 2.4384 -5.7546 3.7238 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241156682.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:31 Heat of formation + Delta-G solvation = -213.336310 kcal Electronic energy + Delta-G solvation = -27931.153558 eV Core-core repulsion = 23141.739112 eV Total energy + Delta-G solvation = -4789.414446 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.31073 -49.98772 -49.40547 -48.74522 -48.74359 -40.47090 -39.09899 -35.58069 -33.98414 -32.41426 -32.09668 -30.19143 -27.12973 -26.88595 -24.56894 -23.55698 -22.92178 -21.91042 -19.68621 -19.61563 -19.52799 -19.47507 -18.25523 -18.13145 -17.32022 -17.11237 -16.81915 -16.44776 -16.14661 -15.91801 -15.75621 -15.59198 -15.53006 -15.17152 -15.05354 -14.91527 -14.90200 -14.75902 -14.51601 -14.22136 -13.97143 -13.80673 -13.67792 -13.22616 -12.84890 -12.72792 -12.66275 -12.26453 -12.16023 -11.92576 -11.51229 -11.11465 -10.31339 -9.91821 -9.56044 -9.30134 -8.98326 -6.55020 -0.18988 0.00946 0.54332 0.65002 1.25165 1.37513 1.46898 1.52887 2.06439 2.35338 2.45097 2.56899 2.85373 3.18645 3.28255 3.29563 3.61005 3.83995 4.01915 4.05814 4.14708 4.27329 4.28687 4.65867 4.66573 4.80728 4.91137 4.95236 5.15160 5.19820 5.25686 5.38361 5.48072 5.58612 5.75149 5.81905 6.09711 6.25973 6.58752 6.68388 8.07478 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.012378 B = 0.005502 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.504104 B = 5087.473284 C = 6196.366865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.050 3.950 3 Si 0.958 3.042 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.245 1.245 7 C -0.453 4.453 8 H 0.067 0.933 9 C 0.088 3.912 10 C -0.222 4.222 11 C -0.096 4.096 12 C -0.048 4.048 13 F -0.162 7.162 14 C -0.077 4.077 15 C -0.161 4.161 16 C -0.047 4.047 17 C -0.057 4.057 18 C -0.113 4.113 19 C -0.054 4.054 20 C -0.238 4.238 21 C 0.514 3.486 22 F -0.164 7.164 23 F -0.187 7.187 24 F -0.181 7.181 25 C 0.127 3.873 26 F -0.142 7.142 27 H 0.298 0.702 28 H 0.112 0.888 29 H 0.135 0.865 30 H 0.137 0.863 31 H 0.159 0.841 32 H 0.187 0.813 33 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.926 -5.955 8.063 11.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.168 4.168 3 Si 0.780 3.220 4 H -0.182 1.182 5 H -0.201 1.201 6 H -0.169 1.169 7 C -0.481 4.481 8 H 0.085 0.915 9 C 0.084 3.916 10 C -0.241 4.241 11 C -0.114 4.114 12 C -0.067 4.067 13 F -0.141 7.141 14 C -0.096 4.096 15 C -0.163 4.163 16 C -0.048 4.048 17 C -0.075 4.075 18 C -0.130 4.130 19 C -0.072 4.072 20 C -0.241 4.241 21 C 0.460 3.540 22 F -0.145 7.145 23 F -0.168 7.168 24 F -0.163 7.163 25 C 0.107 3.893 26 F -0.120 7.120 27 H 0.109 0.891 28 H 0.130 0.870 29 H 0.152 0.848 30 H 0.155 0.845 31 H 0.177 0.823 32 H 0.204 0.796 33 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 5.611 -5.910 7.994 11.415 hybrid contribution -0.546 0.457 -1.041 1.261 sum 5.065 -5.453 6.953 10.185 Atomic orbital electron populations 1.69714 1.09367 1.31958 1.34213 1.26932 0.95289 1.04302 0.90230 0.85593 0.80079 0.76453 0.79827 1.18155 1.20082 1.16859 1.19456 0.93814 0.95862 1.38922 0.91506 1.17827 0.92491 0.91398 0.89839 1.20708 0.95774 1.04490 1.03142 1.20677 0.93202 0.97890 0.99658 1.17210 0.78728 1.04102 1.06706 1.91338 1.34652 1.96779 1.91336 1.20833 0.94860 0.97500 0.96407 1.18329 0.92594 1.01979 1.03398 1.18795 0.96360 0.93780 0.95868 1.21778 0.98017 0.97966 0.89734 1.21561 0.96329 0.93441 1.01682 1.21309 0.94917 0.98987 0.91964 1.20108 1.04970 1.00667 0.98319 1.18113 0.80428 0.80618 0.74817 1.93155 1.93576 1.74613 1.53147 1.93232 1.52210 1.81665 1.89705 1.93198 1.86612 1.75888 1.60555 1.17834 0.96075 0.96419 0.78945 1.91497 1.87042 1.95703 1.37779 0.89146 0.87033 0.84753 0.84489 0.82312 0.79623 0.80805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.16 13.93 21.84 0.30 -42.86 16 2 C 0.05 2.52 5.40 85.28 0.46 2.98 16 3 Si 0.96 39.42 24.52 68.60 1.68 41.10 16 4 H -0.26 -10.01 6.71 99.48 0.67 -9.34 16 5 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 6 H -0.25 -10.13 6.87 99.48 0.68 -9.45 16 7 C -0.45 -23.70 8.60 23.33 0.20 -23.50 16 8 H 0.07 3.83 5.72 -2.91 -0.02 3.81 16 9 C 0.09 4.18 4.99 -21.12 -0.11 4.08 16 10 C -0.22 -9.91 7.11 22.45 0.16 -9.75 16 11 C -0.10 -3.83 9.94 22.07 0.22 -3.61 16 12 C -0.05 -1.90 7.31 22.54 0.16 -1.73 16 13 F -0.16 -6.09 17.26 44.97 0.78 -5.32 16 14 C -0.08 -2.98 9.70 22.51 0.22 -2.76 16 15 C -0.16 -6.86 5.06 -19.62 -0.10 -6.96 16 16 C -0.05 -1.78 4.69 -20.00 -0.09 -1.88 16 17 C -0.06 -1.59 9.75 22.53 0.22 -1.37 16 18 C -0.11 -2.36 10.03 22.24 0.22 -2.13 16 19 C -0.05 -1.29 9.43 22.34 0.21 -1.08 16 20 C -0.24 -7.85 5.37 -19.86 -0.11 -7.96 16 21 C 0.51 16.84 3.02 71.23 0.22 17.06 16 22 F -0.16 -4.40 15.96 44.97 0.72 -3.69 16 23 F -0.19 -7.11 17.03 44.97 0.77 -6.35 16 24 F -0.18 -6.13 17.06 44.97 0.77 -5.36 16 25 C 0.13 5.07 5.78 22.66 0.13 5.20 16 26 F -0.14 -6.64 14.86 44.97 0.67 -5.97 16 27 H 0.30 13.86 8.30 -92.71 -0.77 13.09 16 28 H 0.11 4.90 4.76 -2.91 -0.01 4.89 16 29 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 30 H 0.14 4.47 8.06 -2.91 -0.02 4.45 16 31 H 0.16 3.67 8.06 -2.91 -0.02 3.65 16 32 H 0.19 2.08 8.06 -2.91 -0.02 2.05 16 33 H 0.17 2.92 7.14 -2.91 -0.02 2.90 16 Total: -1.00 -60.03 305.64 8.84 -51.18 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 1.14 Total: 10.68 kcal Atomic # 6 Polarization: -35.44 SS G_CDS: 2.02 Total: -33.42 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: 0.30 Total: -42.86 kcal Atomic # 9 Polarization: -30.38 SS G_CDS: 3.70 Total: -26.68 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 1.68 Total: 41.10 kcal Total: -60.03 8.84 -51.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241156682.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.154 kcal (2) G-P(sol) polarization free energy of solvation -60.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds