Wall clock time and date at job start Tue Mar 31 2020 15:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30813 * 1 3 3 Si 1.86793 * 120.00098 * 2 1 4 4 H 1.48504 * 109.47051 * 275.41736 * 3 2 1 5 5 H 1.48498 * 109.47268 * 35.41668 * 3 2 1 6 6 H 1.48499 * 109.47282 * 155.42094 * 3 2 1 7 7 C 1.39991 * 119.99733 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00150 * 341.72180 * 7 2 1 9 9 C 1.41009 * 119.99870 * 161.71963 * 7 2 1 10 10 C 1.40985 * 120.10053 * 150.36990 * 9 7 2 11 11 C 1.36226 * 119.92527 * 180.27068 * 10 9 7 12 12 C 1.39960 * 120.13918 * 359.48362 * 11 10 9 13 13 C 1.47911 * 119.89508 * 180.27266 * 12 11 10 14 14 C 1.39626 * 120.15842 * 64.72284 * 13 12 11 15 15 C 1.37898 * 119.87407 * 179.72457 * 14 13 12 16 16 C 1.38440 * 120.20515 * 0.57517 * 15 14 13 17 17 C 1.38303 * 120.32833 * 359.70053 * 16 15 14 18 18 C 1.50699 * 119.93973 * 180.02562 * 17 16 15 19 19 F 1.39898 * 109.47622 * 359.97438 * 18 17 16 20 20 F 1.39906 * 109.46838 * 119.97993 * 18 17 16 21 21 F 1.39898 * 109.46964 * 239.97605 * 18 17 16 22 22 C 1.38216 * 120.11836 * 359.97438 * 17 16 15 23 23 F 1.35101 * 120.10746 * 180.02562 * 22 17 16 24 24 C 1.40164 * 120.20965 * 0.25040 * 12 11 10 25 25 F 1.35100 * 119.96811 * 180.02562 * 24 12 11 26 26 C 1.36468 * 120.06778 * 0.02562 * 24 12 11 27 27 H 0.96997 * 119.99961 * 359.97438 * 1 2 3 28 28 H 1.07995 * 120.03968 * 0.03261 * 10 9 7 29 29 H 1.07996 * 119.92595 * 179.75835 * 11 10 9 30 30 H 1.08007 * 120.06400 * 0.02562 * 14 13 12 31 31 H 1.08003 * 119.89634 * 180.27434 * 15 14 13 32 32 H 1.08004 * 119.84192 * 179.71811 * 16 15 14 33 33 H 1.08004 * 120.07341 * 179.97438 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.3752 2.1124 -1.3939 5 1 1.5015 2.6169 0.8114 6 1 3.5922 1.4098 0.5823 7 6 2.0080 -1.2124 -0.0005 8 1 1.5089 -2.1243 0.2924 9 6 3.3647 -1.2431 -0.3836 10 6 4.2320 -2.2111 0.1628 11 6 5.5433 -2.2340 -0.2056 12 6 6.0289 -1.3054 -1.1335 13 6 7.4523 -1.3390 -1.5342 14 6 7.9610 -2.4412 -2.2242 15 6 9.2876 -2.4638 -2.5999 16 6 10.1190 -1.4027 -2.2847 17 6 9.6254 -0.3093 -1.5965 18 6 10.5381 0.8412 -1.2584 19 9 11.8239 0.5737 -1.7402 20 9 10.0520 2.0117 -1.8510 21 9 10.5854 1.0064 0.1300 22 6 8.2963 -0.2695 -1.2192 23 9 7.8143 0.7989 -0.5474 24 6 5.1705 -0.3441 -1.6845 25 9 5.6443 0.5495 -2.5802 26 6 3.8566 -0.3099 -1.3173 27 1 -0.4850 0.8400 0.0004 28 1 3.8581 -2.9312 0.8755 29 1 6.2085 -2.9730 0.2158 30 1 7.3155 -3.2723 -2.4675 31 1 9.6803 -3.3142 -3.1376 32 1 11.1581 -1.4286 -2.5779 33 1 3.1952 0.4311 -1.7415 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241156823.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:48 Heat of formation + Delta-G solvation = -203.560561 kcal Electronic energy + Delta-G solvation = -27543.465216 eV Core-core repulsion = 22754.474679 eV Total energy + Delta-G solvation = -4788.990537 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.22325 -48.79433 -48.04172 -47.68762 -47.61414 -39.18617 -37.67721 -34.14529 -32.58144 -31.32573 -29.81766 -29.27415 -26.07185 -25.62461 -22.63571 -22.35087 -21.61776 -20.56245 -18.56254 -18.51618 -18.34181 -17.94652 -17.18289 -16.37630 -16.17980 -15.58691 -15.39794 -14.99831 -14.91643 -14.73369 -14.61844 -14.47237 -14.40644 -14.08220 -13.80031 -13.79889 -13.38365 -13.19271 -13.11807 -12.99701 -12.54031 -12.44430 -12.09657 -12.00522 -11.58981 -11.35153 -11.03326 -10.86332 -10.55460 -10.23136 -9.98846 -9.38526 -9.25814 -8.74427 -7.94422 -7.70029 -7.28135 -4.82620 0.79746 1.06137 2.15177 2.41365 2.58989 2.98017 3.07122 3.18186 3.37091 3.61908 3.79072 3.89221 4.13189 4.21062 4.36819 4.77019 4.89144 5.05123 5.11142 5.15731 5.25966 5.60991 5.76889 5.87140 5.91876 6.14106 6.25386 6.27150 6.42828 6.46423 6.70011 6.78774 7.14249 7.22413 7.34088 7.49255 7.80014 8.01253 8.30282 8.44964 9.71193 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.020497 B = 0.004007 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.737067 B = 6986.457365 C = 7720.608824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.084 3.916 3 Si 0.908 3.092 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.240 1.240 7 C -0.421 4.421 8 H 0.100 0.900 9 C 0.116 3.884 10 C -0.216 4.216 11 C -0.030 4.030 12 C -0.256 4.256 13 C -0.023 4.023 14 C -0.058 4.058 15 C -0.132 4.132 16 C -0.065 4.065 17 C -0.225 4.225 18 C 0.514 3.486 19 F -0.178 7.178 20 F -0.173 7.173 21 F -0.174 7.174 22 C 0.150 3.850 23 F -0.118 7.118 24 C 0.168 3.832 25 F -0.157 7.157 26 C -0.282 4.282 27 H 0.292 0.708 28 H 0.110 0.890 29 H 0.106 0.894 30 H 0.141 0.859 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.674 -2.523 -3.186 16.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.163 1.163 7 C -0.447 4.447 8 H 0.118 0.882 9 C 0.112 3.888 10 C -0.236 4.236 11 C -0.048 4.048 12 C -0.258 4.258 13 C -0.024 4.024 14 C -0.076 4.076 15 C -0.150 4.150 16 C -0.084 4.084 17 C -0.228 4.228 18 C 0.459 3.541 19 F -0.159 7.159 20 F -0.155 7.155 21 F -0.156 7.156 22 C 0.130 3.870 23 F -0.096 7.096 24 C 0.149 3.851 25 F -0.136 7.136 26 C -0.302 4.302 27 H 0.103 0.897 28 H 0.128 0.872 29 H 0.124 0.876 30 H 0.159 0.841 31 H 0.155 0.845 32 H 0.159 0.841 33 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 15.379 -2.316 -3.153 15.869 hybrid contribution 0.281 1.388 -0.021 1.416 sum 15.661 -0.929 -3.173 16.006 Atomic orbital electron populations 1.69665 1.08270 1.31180 1.31365 1.26313 0.94818 1.02253 0.90494 0.86317 0.81599 0.79210 0.79530 1.19111 1.21095 1.16257 1.19641 0.92955 0.96395 1.35733 0.88199 1.17541 0.93004 0.89896 0.88339 1.20722 0.92859 1.04505 1.05479 1.20191 0.95303 0.95262 0.94076 1.17617 0.90113 1.06145 1.11922 1.18803 0.93624 0.92410 0.97594 1.21552 0.95116 0.97317 0.93644 1.21091 0.93562 0.98763 1.01621 1.20819 1.00668 0.91436 0.95436 1.19941 0.93369 0.98204 1.11240 1.18088 0.78772 0.82474 0.74733 1.93143 1.40844 1.93811 1.88094 1.93239 1.87718 1.50769 1.83743 1.93229 1.96401 1.95963 1.29959 1.17613 0.90056 0.85646 0.93657 1.91565 1.88363 1.52904 1.76814 1.17178 0.92241 0.87179 0.88513 1.91386 1.89302 1.66714 1.66171 1.20654 0.94057 1.08131 1.07381 0.89702 0.87163 0.87599 0.84070 0.84464 0.84085 0.86822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.33 13.93 55.55 0.77 -18.55 16 2 C 0.08 2.06 5.40 -17.33 -0.09 1.97 16 3 Si 0.91 20.14 24.51 -169.99 -4.17 15.97 16 4 H -0.27 -5.85 6.70 56.52 0.38 -5.47 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.24 -5.56 6.87 56.52 0.39 -5.17 16 7 C -0.42 -10.45 9.55 -37.88 -0.36 -10.81 16 8 H 0.10 2.53 8.06 -52.48 -0.42 2.11 16 9 C 0.12 2.74 5.10 -106.81 -0.55 2.19 16 10 C -0.22 -4.54 9.73 -39.27 -0.38 -4.92 16 11 C -0.03 -0.57 9.66 -39.66 -0.38 -0.96 16 12 C -0.26 -5.16 5.04 -104.57 -0.53 -5.69 16 13 C -0.02 -0.40 5.00 -104.82 -0.52 -0.93 16 14 C -0.06 -0.78 9.74 -39.19 -0.38 -1.16 16 15 C -0.13 -1.42 10.03 -39.63 -0.40 -1.82 16 16 C -0.07 -0.76 9.43 -39.48 -0.37 -1.13 16 17 C -0.23 -3.30 5.37 -104.61 -0.56 -3.86 16 18 C 0.51 7.35 3.03 36.00 0.11 7.46 16 19 F -0.18 -2.20 15.96 2.25 0.04 -2.16 16 20 F -0.17 -2.69 17.05 2.25 0.04 -2.66 16 21 F -0.17 -2.63 17.05 2.25 0.04 -2.59 16 22 C 0.15 2.64 6.89 -38.99 -0.27 2.37 16 23 F -0.12 -2.36 15.87 2.25 0.04 -2.32 16 24 C 0.17 3.79 7.01 -39.50 -0.28 3.52 16 25 F -0.16 -3.52 16.64 2.25 0.04 -3.48 16 26 C -0.28 -6.70 7.07 -39.22 -0.28 -6.97 16 27 H 0.29 6.50 8.30 -40.82 -0.34 6.16 16 28 H 0.11 2.12 8.06 -52.49 -0.42 1.69 16 29 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 30 H 0.14 1.64 8.06 -52.48 -0.42 1.21 16 31 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 32 H 0.14 1.25 7.14 -52.48 -0.37 0.87 16 33 H 0.11 2.73 4.72 -52.48 -0.25 2.48 16 LS Contribution 310.18 15.07 4.67 4.67 Total: -1.00 -26.04 310.18 -5.68 -31.72 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -1.91 Total: 0.15 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -5.24 Total: -20.75 kcal Atomic # 7 Polarization: -19.33 SS G_CDS: 0.77 Total: -18.55 kcal Atomic # 9 Polarization: -13.40 SS G_CDS: 0.19 Total: -13.21 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.17 Total: 15.97 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -26.04 -5.68 -31.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241156823.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.841 kcal (2) G-P(sol) polarization free energy of solvation -26.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds