Wall clock time and date at job start Tue Mar 31 2020 15:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30813 * 1 3 3 Si 1.86793 * 120.00098 * 2 1 4 4 H 1.48504 * 109.47051 * 275.41736 * 3 2 1 5 5 H 1.48498 * 109.47268 * 35.41668 * 3 2 1 6 6 H 1.48499 * 109.47282 * 155.42094 * 3 2 1 7 7 C 1.39991 * 119.99733 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00150 * 341.72180 * 7 2 1 9 9 C 1.41009 * 119.99870 * 161.71963 * 7 2 1 10 10 C 1.40985 * 120.10053 * 150.36990 * 9 7 2 11 11 C 1.36226 * 119.92527 * 180.27068 * 10 9 7 12 12 C 1.39960 * 120.13918 * 359.48362 * 11 10 9 13 13 C 1.47911 * 119.89508 * 180.27266 * 12 11 10 14 14 C 1.39626 * 120.15842 * 64.72284 * 13 12 11 15 15 C 1.37898 * 119.87407 * 179.72457 * 14 13 12 16 16 C 1.38440 * 120.20515 * 0.57517 * 15 14 13 17 17 C 1.38303 * 120.32833 * 359.70053 * 16 15 14 18 18 C 1.50699 * 119.93973 * 180.02562 * 17 16 15 19 19 F 1.39898 * 109.47622 * 359.97438 * 18 17 16 20 20 F 1.39906 * 109.46838 * 119.97993 * 18 17 16 21 21 F 1.39898 * 109.46964 * 239.97605 * 18 17 16 22 22 C 1.38216 * 120.11836 * 359.97438 * 17 16 15 23 23 F 1.35101 * 120.10746 * 180.02562 * 22 17 16 24 24 C 1.40164 * 120.20965 * 0.25040 * 12 11 10 25 25 F 1.35100 * 119.96811 * 180.02562 * 24 12 11 26 26 C 1.36468 * 120.06778 * 0.02562 * 24 12 11 27 27 H 0.96997 * 119.99961 * 359.97438 * 1 2 3 28 28 H 1.07995 * 120.03968 * 0.03261 * 10 9 7 29 29 H 1.07996 * 119.92595 * 179.75835 * 11 10 9 30 30 H 1.08007 * 120.06400 * 0.02562 * 14 13 12 31 31 H 1.08003 * 119.89634 * 180.27434 * 15 14 13 32 32 H 1.08004 * 119.84192 * 179.71811 * 16 15 14 33 33 H 1.08004 * 120.07341 * 179.97438 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.3752 2.1124 -1.3939 5 1 1.5015 2.6169 0.8114 6 1 3.5922 1.4098 0.5823 7 6 2.0080 -1.2124 -0.0005 8 1 1.5089 -2.1243 0.2924 9 6 3.3647 -1.2431 -0.3836 10 6 4.2320 -2.2111 0.1628 11 6 5.5433 -2.2340 -0.2056 12 6 6.0289 -1.3054 -1.1335 13 6 7.4523 -1.3390 -1.5342 14 6 7.9610 -2.4412 -2.2242 15 6 9.2876 -2.4638 -2.5999 16 6 10.1190 -1.4027 -2.2847 17 6 9.6254 -0.3093 -1.5965 18 6 10.5381 0.8412 -1.2584 19 9 11.8239 0.5737 -1.7402 20 9 10.0520 2.0117 -1.8510 21 9 10.5854 1.0064 0.1300 22 6 8.2963 -0.2695 -1.2192 23 9 7.8143 0.7989 -0.5474 24 6 5.1705 -0.3441 -1.6845 25 9 5.6443 0.5495 -2.5802 26 6 3.8566 -0.3099 -1.3173 27 1 -0.4850 0.8400 0.0004 28 1 3.8581 -2.9312 0.8755 29 1 6.2085 -2.9730 0.2158 30 1 7.3155 -3.2723 -2.4675 31 1 9.6803 -3.3142 -3.1376 32 1 11.1581 -1.4286 -2.5779 33 1 3.1952 0.4311 -1.7415 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241156823.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:48 Heat of formation + Delta-G solvation = -215.103332 kcal Electronic energy + Delta-G solvation = -27543.965749 eV Core-core repulsion = 22754.474679 eV Total energy + Delta-G solvation = -4789.491069 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.34489 -50.16869 -49.77414 -48.78056 -48.77268 -40.40028 -39.26600 -35.85188 -33.99523 -32.49800 -31.45534 -30.81712 -27.25606 -27.14131 -24.09314 -23.66852 -23.02398 -22.12180 -19.77063 -19.68460 -19.64494 -19.50030 -18.34690 -18.08713 -17.49103 -17.04342 -16.92251 -16.57699 -16.53293 -16.34758 -15.83732 -15.62534 -15.52946 -15.19884 -15.13752 -14.93150 -14.91393 -14.82035 -14.40566 -14.33636 -13.97144 -13.88203 -13.54801 -13.41510 -12.90915 -12.80757 -12.77169 -12.32158 -12.23237 -11.92246 -11.75813 -11.16211 -10.39069 -9.96694 -9.63777 -9.35991 -9.09988 -6.67066 -0.27458 -0.09802 0.49932 0.66248 1.17872 1.26738 1.36890 1.48435 1.99075 2.26554 2.38937 2.52872 2.78955 3.08779 3.24120 3.26907 3.53013 3.61849 3.93861 3.96973 4.11011 4.21753 4.50326 4.57480 4.67211 4.73107 4.84576 4.87887 5.08216 5.15553 5.25685 5.39328 5.50317 5.63913 5.69166 5.74619 6.04171 6.20166 6.51589 6.64333 7.96038 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.020497 B = 0.004007 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.737067 B = 6986.457365 C = 7720.608824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.063 3.937 3 Si 0.946 3.054 4 H -0.269 1.269 5 H -0.266 1.266 6 H -0.260 1.260 7 C -0.458 4.458 8 H 0.082 0.918 9 C 0.103 3.897 10 C -0.217 4.217 11 C -0.025 4.025 12 C -0.228 4.228 13 C -0.060 4.060 14 C -0.049 4.049 15 C -0.109 4.109 16 C -0.047 4.047 17 C -0.233 4.233 18 C 0.514 3.486 19 F -0.163 7.163 20 F -0.185 7.185 21 F -0.182 7.182 22 C 0.118 3.882 23 F -0.145 7.145 24 C 0.143 3.857 25 F -0.160 7.160 26 C -0.299 4.299 27 H 0.300 0.700 28 H 0.127 0.873 29 H 0.149 0.851 30 H 0.163 0.837 31 H 0.188 0.812 32 H 0.177 0.823 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.520 -4.524 -4.214 20.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.157 4.157 3 Si 0.771 3.229 4 H -0.195 1.195 5 H -0.191 1.191 6 H -0.184 1.184 7 C -0.486 4.486 8 H 0.100 0.900 9 C 0.100 3.900 10 C -0.236 4.236 11 C -0.043 4.043 12 C -0.230 4.230 13 C -0.061 4.061 14 C -0.067 4.067 15 C -0.126 4.126 16 C -0.065 4.065 17 C -0.235 4.235 18 C 0.460 3.540 19 F -0.144 7.144 20 F -0.166 7.166 21 F -0.163 7.163 22 C 0.099 3.901 23 F -0.124 7.124 24 C 0.124 3.876 25 F -0.139 7.139 26 C -0.319 4.319 27 H 0.111 0.889 28 H 0.145 0.855 29 H 0.166 0.834 30 H 0.180 0.820 31 H 0.205 0.795 32 H 0.194 0.806 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 19.225 -4.313 -4.182 20.142 hybrid contribution -0.487 1.866 0.179 1.937 sum 18.738 -2.447 -4.003 19.316 Atomic orbital electron populations 1.69666 1.08761 1.32027 1.33850 1.26647 0.95171 1.03531 0.90320 0.85753 0.79914 0.78013 0.79239 1.19518 1.19141 1.18417 1.19591 0.93986 0.96159 1.38823 0.90004 1.17700 0.93067 0.90763 0.88461 1.21025 0.93466 1.03871 1.05248 1.20631 0.95041 0.95573 0.93023 1.18075 0.91654 1.03775 1.09472 1.18815 0.91977 0.94507 1.00824 1.21839 0.96694 0.96082 0.92063 1.21624 0.91936 0.99470 0.99601 1.21380 1.02446 0.89942 0.92741 1.20083 0.92234 0.99297 1.11890 1.18107 0.79340 0.82179 0.74380 1.93168 1.39762 1.93645 1.87838 1.93218 1.87987 1.51546 1.83890 1.93213 1.96478 1.95991 1.30654 1.17925 0.91564 0.85353 0.95304 1.91494 1.88867 1.54262 1.77744 1.17469 0.92441 0.88323 0.89412 1.91365 1.89237 1.67012 1.66304 1.20705 0.94745 1.08439 1.08016 0.88900 0.85463 0.83358 0.81982 0.79456 0.80565 0.88078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.21 13.93 21.84 0.30 -41.91 16 2 C 0.06 3.20 5.40 85.27 0.46 3.66 16 3 Si 0.95 43.12 24.51 68.60 1.68 44.80 16 4 H -0.27 -12.22 6.70 99.48 0.67 -11.56 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 6 H -0.26 -12.54 6.87 99.48 0.68 -11.85 16 7 C -0.46 -23.85 9.55 23.37 0.22 -23.63 16 8 H 0.08 4.41 8.06 -2.91 -0.02 4.38 16 9 C 0.10 5.00 5.10 -21.28 -0.11 4.90 16 10 C -0.22 -8.94 9.73 22.47 0.22 -8.73 16 11 C -0.02 -0.89 9.66 22.22 0.21 -0.67 16 12 C -0.23 -8.84 5.04 -19.83 -0.10 -8.94 16 13 C -0.06 -1.92 5.00 -19.99 -0.10 -2.02 16 14 C -0.05 -1.06 9.74 22.52 0.22 -0.84 16 15 C -0.11 -1.61 10.03 22.24 0.22 -1.39 16 16 C -0.05 -0.83 9.43 22.33 0.21 -0.62 16 17 C -0.23 -6.12 5.37 -19.85 -0.11 -6.22 16 18 C 0.51 13.63 3.03 71.24 0.22 13.85 16 19 F -0.16 -3.48 15.96 44.97 0.72 -2.76 16 20 F -0.19 -5.58 17.05 44.97 0.77 -4.82 16 21 F -0.18 -5.26 17.05 44.97 0.77 -4.50 16 22 C 0.12 3.95 6.89 22.65 0.16 4.10 16 23 F -0.15 -5.84 15.87 44.97 0.71 -5.12 16 24 C 0.14 6.48 7.01 22.32 0.16 6.64 16 25 F -0.16 -7.29 16.64 44.97 0.75 -6.54 16 26 C -0.30 -14.61 7.07 22.50 0.16 -14.45 16 27 H 0.30 13.89 8.30 -92.71 -0.77 13.12 16 28 H 0.13 4.75 8.06 -2.91 -0.02 4.72 16 29 H 0.15 4.09 8.06 -2.91 -0.02 4.06 16 30 H 0.16 2.83 8.06 -2.91 -0.02 2.80 16 31 H 0.19 1.05 8.06 -2.91 -0.02 1.03 16 32 H 0.18 1.90 7.14 -2.91 -0.02 1.88 16 33 H 0.10 5.09 4.72 -2.91 -0.01 5.08 16 Total: -1.00 -60.82 310.18 8.88 -51.94 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: 1.14 Total: 3.26 kcal Atomic # 6 Polarization: -36.40 SS G_CDS: 2.04 Total: -34.36 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: 0.30 Total: -41.91 kcal Atomic # 9 Polarization: -27.45 SS G_CDS: 3.71 Total: -23.74 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 1.68 Total: 44.80 kcal Total: -60.82 8.88 -51.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241156823.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.163 kcal (2) G-P(sol) polarization free energy of solvation -60.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds