Wall clock time and date at job start Tue Mar 31 2020 15:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30867 * 1 3 3 Si 1.86805 * 119.99773 * 2 1 4 4 H 1.48494 * 109.47128 * 275.41341 * 3 2 1 5 5 H 1.48489 * 109.47340 * 35.41817 * 3 2 1 6 6 H 1.48503 * 109.46953 * 155.41759 * 3 2 1 7 7 C 1.39888 * 119.99867 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99836 * 341.72524 * 7 2 1 9 9 C 1.41342 * 120.00096 * 161.73353 * 7 2 1 10 10 C 1.40856 * 120.15204 * 330.13936 * 9 7 2 11 11 C 1.37557 * 120.02104 * 179.97438 * 10 9 7 12 12 C 1.38757 * 120.34955 * 0.02846 * 11 10 9 13 13 F 1.35106 * 119.84105 * 180.02562 * 12 11 10 14 14 C 1.39997 * 120.31586 * 359.97438 * 12 11 10 15 15 C 1.48361 * 120.01533 * 180.02562 * 14 12 11 16 16 C 1.39339 * 120.13293 * 244.95588 * 15 14 12 17 17 C 1.37993 * 119.90465 * 180.02562 * 16 15 14 18 18 C 1.38366 * 120.17330 * 359.97438 * 17 16 15 19 19 C 1.38257 * 120.26589 * 359.97438 * 18 17 16 20 20 C 1.50704 * 119.94574 * 180.02562 * 19 18 17 21 21 F 1.39897 * 109.47407 * 0.02562 * 20 19 18 22 22 F 1.39902 * 109.47070 * 120.00512 * 20 19 18 23 23 F 1.39908 * 109.46779 * 239.99865 * 20 19 18 24 24 C 1.38277 * 120.10012 * 359.77109 * 19 18 17 25 25 F 1.35104 * 120.09014 * 180.25463 * 24 19 18 26 26 C 1.38673 * 119.96860 * 359.97438 * 14 12 11 27 27 H 0.97008 * 119.99700 * 0.02562 * 1 2 3 28 28 H 1.07994 * 119.98645 * 0.03133 * 10 9 7 29 29 H 1.08001 * 119.82629 * 180.02562 * 11 10 9 30 30 H 1.08000 * 120.04795 * 0.02562 * 16 15 14 31 31 H 1.07998 * 119.91622 * 180.02562 * 17 16 15 32 32 H 1.07993 * 119.86231 * 180.02562 * 18 17 16 33 33 H 1.07994 * 120.17382 * 180.29686 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.3757 2.1125 -1.3938 5 1 1.5021 2.6169 0.8113 6 1 3.5928 1.4099 0.5824 7 6 2.0081 -1.2115 -0.0005 8 1 1.5089 -2.1233 0.2923 9 6 3.3681 -1.2422 -0.3842 10 6 3.8612 -0.3093 -1.3173 11 6 5.1854 -0.3413 -1.6883 12 6 6.0421 -1.2901 -1.1485 13 9 7.3409 -1.3118 -1.5199 14 6 5.5672 -2.2241 -0.2201 15 6 6.4891 -3.2352 0.3533 16 6 6.2961 -4.5891 0.0862 17 6 7.1561 -5.5256 0.6225 18 6 8.2098 -5.1236 1.4241 19 6 8.4086 -3.7821 1.6929 20 6 9.5590 -3.3523 2.5665 21 9 10.2764 -4.4795 2.9809 22 9 10.4027 -2.5032 1.8422 23 9 9.0659 -2.6748 3.6869 24 6 7.5567 -2.8338 1.1571 25 9 7.7542 -1.5225 1.4157 26 6 4.2349 -2.2031 0.1641 27 1 -0.4850 0.8401 -0.0004 28 1 3.1997 0.4319 -1.7407 29 1 5.5603 0.3757 -2.4037 30 1 5.4745 -4.9050 -0.5396 31 1 7.0069 -6.5749 0.4152 32 1 8.8801 -5.8607 1.8408 33 1 3.8662 -2.9190 0.8837 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241158312.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:55 Heat of formation + Delta-G solvation = -201.967758 kcal Electronic energy + Delta-G solvation = -27470.964095 eV Core-core repulsion = 22682.042627 eV Total energy + Delta-G solvation = -4788.921468 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.25484 -48.88017 -47.77650 -47.70829 -47.64226 -39.31120 -37.65584 -33.94404 -32.73478 -31.37711 -30.27059 -28.79365 -26.14556 -25.08966 -23.49781 -22.32985 -21.23122 -20.75288 -18.65317 -18.54527 -18.49962 -17.40038 -17.25150 -16.74685 -16.19764 -15.71373 -15.42635 -15.06333 -14.87292 -14.61576 -14.50541 -14.48349 -14.28096 -14.10901 -13.82566 -13.81379 -13.30913 -13.20814 -13.11507 -12.82107 -12.73779 -12.49698 -12.11484 -11.99341 -11.87969 -11.41598 -10.98739 -10.89154 -10.46429 -10.24984 -9.81474 -9.36724 -9.31656 -8.85574 -8.01557 -7.66644 -7.14592 -4.67928 0.71907 0.96538 2.14095 2.27071 2.55063 2.97727 3.09804 3.19568 3.29359 3.57525 3.81927 3.83737 4.11438 4.17773 4.33174 4.64611 4.81396 4.95244 5.03642 5.12181 5.38175 5.49703 5.72709 5.76104 5.81417 6.06510 6.17686 6.22992 6.36170 6.52559 6.60786 6.83593 7.05878 7.14447 7.28555 7.55292 7.78359 8.11155 8.35166 8.55677 9.86742 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.019273 B = 0.003791 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.489972 B = 7383.325753 C = 7556.272193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.085 3.915 3 Si 0.906 3.094 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.242 1.242 7 C -0.438 4.438 8 H 0.095 0.905 9 C 0.083 3.917 10 C -0.209 4.209 11 C -0.101 4.101 12 C -0.024 4.024 13 F -0.163 7.163 14 C -0.060 4.060 15 C -0.055 4.055 16 C -0.046 4.046 17 C -0.133 4.133 18 C -0.056 4.056 19 C -0.228 4.228 20 C 0.515 3.485 21 F -0.177 7.177 22 F -0.173 7.173 23 F -0.173 7.173 24 C 0.164 3.836 25 F -0.115 7.115 26 C -0.161 4.161 27 H 0.289 0.711 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.145 0.855 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.275 -8.023 2.327 14.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.136 4.136 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.165 1.165 7 C -0.465 4.465 8 H 0.113 0.887 9 C 0.080 3.920 10 C -0.228 4.228 11 C -0.120 4.120 12 C -0.044 4.044 13 F -0.142 7.142 14 C -0.061 4.061 15 C -0.056 4.056 16 C -0.064 4.064 17 C -0.151 4.151 18 C -0.074 4.074 19 C -0.230 4.230 20 C 0.460 3.540 21 F -0.158 7.158 22 F -0.154 7.154 23 F -0.154 7.154 24 C 0.144 3.856 25 F -0.093 7.093 26 C -0.180 4.180 27 H 0.099 0.901 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.163 0.837 31 H 0.159 0.841 32 H 0.162 0.838 33 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 12.065 -7.860 2.378 14.594 hybrid contribution 0.629 1.161 0.106 1.324 sum 12.694 -6.699 2.483 14.566 Atomic orbital electron populations 1.69695 1.08104 1.30661 1.33592 1.26172 0.94767 1.01823 0.90835 0.86375 0.81548 0.79733 0.79168 1.19311 1.21344 1.16508 1.19473 0.92788 0.96355 1.37917 0.88677 1.17655 0.93229 0.90997 0.90121 1.21000 0.94698 1.04360 1.02742 1.20528 0.93836 0.97460 1.00144 1.17124 0.78452 1.02909 1.05878 1.91330 1.35016 1.96659 1.91202 1.18136 0.93740 0.95445 0.98807 1.18947 0.94344 0.94707 0.97554 1.21468 0.98148 0.90633 0.96150 1.21119 0.95059 1.00416 0.98516 1.20866 0.97554 0.92858 0.96109 1.19941 0.99516 0.96039 1.07521 1.18038 0.82211 0.74876 0.78841 1.93148 1.79877 1.51757 1.91019 1.93240 1.73052 1.71654 1.77478 1.93240 1.87531 1.80645 1.54015 1.17369 0.94439 0.77829 0.95943 1.91584 1.94134 1.31920 1.91704 1.20922 0.90210 1.03821 1.03097 0.90087 0.87082 0.87109 0.83690 0.84096 0.83802 0.86762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.90 13.93 55.54 0.77 -19.12 16 2 C 0.08 2.07 5.40 -17.35 -0.09 1.97 16 3 Si 0.91 19.55 24.51 -169.99 -4.17 15.38 16 4 H -0.27 -5.54 6.70 56.52 0.38 -5.17 16 5 H -0.29 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.24 -5.43 6.87 56.52 0.39 -5.05 16 7 C -0.44 -10.89 9.56 -37.78 -0.36 -11.25 16 8 H 0.10 2.45 8.06 -52.49 -0.42 2.03 16 9 C 0.08 1.94 5.10 -106.85 -0.55 1.40 16 10 C -0.21 -4.70 7.16 -38.84 -0.28 -4.98 16 11 C -0.10 -2.14 9.99 -39.64 -0.40 -2.53 16 12 C -0.02 -0.51 7.08 -38.73 -0.27 -0.78 16 13 F -0.16 -3.44 16.64 2.25 0.04 -3.40 16 14 C -0.06 -1.23 5.01 -104.91 -0.53 -1.75 16 15 C -0.05 -0.94 5.00 -104.84 -0.52 -1.47 16 16 C -0.05 -0.62 9.73 -39.26 -0.38 -1.00 16 17 C -0.13 -1.41 10.03 -39.62 -0.40 -1.80 16 18 C -0.06 -0.63 9.43 -39.53 -0.37 -1.00 16 19 C -0.23 -3.26 5.37 -104.60 -0.56 -3.82 16 20 C 0.51 7.16 3.03 36.01 0.11 7.27 16 21 F -0.18 -2.12 15.96 2.25 0.04 -2.09 16 22 F -0.17 -2.59 17.04 2.25 0.04 -2.55 16 23 F -0.17 -2.57 17.06 2.25 0.04 -2.53 16 24 C 0.16 2.83 6.87 -39.08 -0.27 2.56 16 25 F -0.12 -2.24 15.85 2.25 0.04 -2.21 16 26 C -0.16 -3.44 9.46 -38.55 -0.36 -3.80 16 27 H 0.29 6.51 8.30 -40.82 -0.34 6.17 16 28 H 0.11 2.46 4.72 -52.49 -0.25 2.21 16 29 H 0.11 2.08 8.06 -52.49 -0.42 1.65 16 30 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 31 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.14 1.21 7.14 -52.49 -0.37 0.84 16 33 H 0.11 2.26 8.06 -52.49 -0.42 1.83 16 LS Contribution 310.33 15.07 4.68 4.68 Total: -1.00 -26.35 310.33 -5.68 -32.03 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -1.91 Total: 0.81 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -5.24 Total: -20.99 kcal Atomic # 7 Polarization: -19.90 SS G_CDS: 0.77 Total: -19.12 kcal Atomic # 9 Polarization: -12.97 SS G_CDS: 0.19 Total: -12.78 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.17 Total: 15.38 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -26.35 -5.68 -32.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241158312.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.942 kcal (2) G-P(sol) polarization free energy of solvation -26.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds