Wall clock time and date at job start Tue Mar 31 2020 15:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86802 * 119.99750 * 2 1 4 4 H 1.48497 * 109.47314 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.46892 * 120.00367 * 3 2 1 6 6 H 1.48501 * 109.46859 * 239.99893 * 3 2 1 7 7 C 1.40005 * 119.99704 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99756 * 206.58132 * 7 2 1 9 9 C 1.40942 * 120.00425 * 26.58905 * 7 2 1 10 10 C 1.40943 * 120.13773 * 25.34885 * 9 7 2 11 11 C 1.36194 * 119.90247 * 180.02562 * 10 9 7 12 12 C 1.40013 * 120.18405 * 0.02562 * 11 10 9 13 13 C 1.48010 * 119.85798 * 179.97438 * 12 11 10 14 14 C 1.39610 * 120.13447 * 359.71654 * 13 12 11 15 15 C 1.37928 * 119.90682 * 179.79084 * 14 13 12 16 16 C 1.38369 * 120.17008 * 0.46766 * 15 14 13 17 17 C 1.50700 * 119.86524 * 179.76458 * 16 15 14 18 18 F 1.39892 * 109.47452 * 0.02562 * 17 16 15 19 19 F 1.39902 * 109.47004 * 120.02897 * 17 16 15 20 20 F 1.39902 * 109.46890 * 240.01985 * 17 16 15 21 21 C 1.38585 * 120.26437 * 359.79102 * 16 15 14 22 22 F 1.35094 * 119.95611 * 179.97438 * 21 16 15 23 23 C 1.38184 * 120.09058 * 359.97160 * 21 16 15 24 24 C 1.39772 * 120.27984 * 359.97150 * 12 11 10 25 25 C 1.36580 * 120.09444 * 359.76171 * 24 12 11 26 26 F 1.35103 * 120.09444 * 180.25438 * 25 24 12 27 27 H 0.97001 * 120.00233 * 185.88866 * 1 2 3 28 28 H 1.08003 * 120.04592 * 0.03252 * 10 9 7 29 29 H 1.08001 * 119.90550 * 179.97438 * 11 10 9 30 30 H 1.08006 * 120.04777 * 0.03205 * 14 13 12 31 31 H 1.08008 * 119.91306 * 180.23333 * 15 14 13 32 32 H 1.08003 * 120.08893 * 179.97438 * 23 21 16 33 33 H 1.07994 * 119.95620 * 180.02562 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 1.2771 2.7465 -0.0006 5 1 3.0959 1.6964 1.2124 6 1 3.0959 1.6964 -1.2125 7 6 2.0081 -1.2125 0.0005 8 1 3.0025 -1.2618 0.4191 9 6 1.4152 -2.3688 -0.5452 10 6 0.4163 -2.2531 -1.5328 11 6 -0.1537 -3.3736 -2.0565 12 6 0.2494 -4.6401 -1.6163 13 6 -0.3754 -5.8530 -2.1900 14 6 -1.3688 -5.7359 -3.1638 15 6 -1.9448 -6.8695 -3.6984 16 6 -1.5474 -8.1220 -3.2650 17 6 -2.1851 -9.3558 -3.8499 18 9 -3.1393 -8.9810 -4.8017 19 9 -1.2030 -10.1440 -4.4595 20 9 -2.8047 -10.0879 -2.8315 21 6 -0.5656 -8.2463 -2.2948 22 9 -0.1827 -9.4723 -1.8758 23 6 0.0222 -7.1181 -1.7553 24 6 1.2394 -4.7638 -0.6373 25 6 1.8226 -3.6479 -0.1082 26 9 2.7831 -3.7676 0.8343 27 1 -0.4850 -0.8356 0.0862 28 1 0.1035 -1.2772 -1.8738 29 1 -0.9195 -3.2849 -2.8130 30 1 -1.6832 -4.7592 -3.5010 31 1 -2.7108 -6.7791 -4.4545 32 1 0.7870 -7.2150 -0.9989 33 1 1.5466 -5.7433 -0.3019 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241914260.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:03 Heat of formation + Delta-G solvation = -215.362144 kcal Electronic energy + Delta-G solvation = -26495.024088 eV Core-core repulsion = 21705.521796 eV Total energy + Delta-G solvation = -4789.502292 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.16773 -48.95858 -47.63187 -47.61641 -47.56848 -39.30685 -37.62909 -34.72548 -32.27203 -30.86180 -29.51732 -29.46258 -26.62963 -24.62119 -23.21021 -22.45340 -21.11276 -20.62270 -18.67258 -18.46653 -18.42783 -18.34983 -17.23689 -16.21002 -15.80411 -15.63682 -15.28926 -15.12769 -14.59961 -14.49021 -14.44847 -14.44414 -14.12371 -14.03574 -14.01474 -13.75818 -13.71281 -13.09432 -13.07936 -12.82624 -12.62839 -12.58673 -12.01270 -11.76371 -11.42733 -11.41359 -11.18641 -10.87927 -10.66003 -10.23965 -10.02160 -9.60232 -9.20587 -8.80208 -8.09284 -7.85178 -7.60177 -4.90444 0.71671 1.26814 2.25858 2.40778 2.69822 2.90634 2.95287 3.12134 3.58179 3.64920 3.74466 3.98481 4.16170 4.20456 4.45832 4.79883 4.94627 5.00664 5.23077 5.32660 5.56018 5.57431 5.73219 5.92932 5.98007 6.11890 6.19796 6.31145 6.49760 6.63936 6.83079 6.87725 7.10379 7.20370 7.31726 7.45361 7.51729 7.71254 8.12712 8.26070 9.45570 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.028021 B = 0.002726 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.019146 B =10269.743198 C =10996.251880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.033 3.967 3 Si 1.069 2.931 4 H -0.268 1.268 5 H -0.270 1.270 6 H -0.268 1.268 7 C -0.462 4.462 8 H 0.092 0.908 9 C 0.074 3.926 10 C -0.213 4.213 11 C -0.046 4.046 12 C -0.218 4.218 13 C 0.089 3.911 14 C -0.162 4.162 15 C -0.032 4.032 16 C -0.275 4.275 17 C 0.517 3.483 18 F -0.179 7.179 19 F -0.179 7.179 20 F -0.179 7.179 21 C 0.163 3.837 22 F -0.133 7.133 23 C -0.191 4.191 24 C -0.073 4.073 25 C -0.030 4.030 26 F -0.159 7.159 27 H 0.306 0.694 28 H 0.117 0.883 29 H 0.105 0.895 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.142 0.858 33 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.291 -7.197 -5.462 9.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.193 4.193 3 Si 0.890 3.110 4 H -0.192 1.192 5 H -0.195 1.195 6 H -0.193 1.193 7 C -0.486 4.486 8 H 0.110 0.890 9 C 0.070 3.930 10 C -0.232 4.232 11 C -0.065 4.065 12 C -0.220 4.220 13 C 0.088 3.912 14 C -0.180 4.180 15 C -0.050 4.050 16 C -0.277 4.277 17 C 0.463 3.537 18 F -0.160 7.160 19 F -0.160 7.160 20 F -0.160 7.160 21 C 0.144 3.856 22 F -0.112 7.112 23 C -0.210 4.210 24 C -0.092 4.092 25 C -0.050 4.050 26 F -0.138 7.138 27 H 0.120 0.880 28 H 0.135 0.865 29 H 0.123 0.877 30 H 0.156 0.844 31 H 0.157 0.843 32 H 0.159 0.841 33 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.532 -5.633 -5.465 8.606 hybrid contribution 0.284 -2.313 0.231 2.341 sum -3.248 -7.946 -5.234 10.054 Atomic orbital electron populations 1.70475 1.08255 1.35090 1.23701 1.27424 0.95559 1.05002 0.91291 0.83558 0.75804 0.72902 0.78727 1.19211 1.19460 1.19335 1.20942 1.03576 0.93947 1.30175 0.89043 1.17822 0.92251 0.91331 0.91641 1.20669 1.03555 0.97876 1.01109 1.20501 0.97088 0.91666 0.97240 1.17562 1.06347 0.90809 1.07239 1.18853 0.90228 0.91949 0.90143 1.21207 0.98870 0.98565 0.99330 1.20676 0.97334 0.89879 0.97150 1.19727 1.06791 0.93792 1.07411 1.18077 0.76214 0.83636 0.75790 1.93135 1.65768 1.91298 1.65844 1.93207 1.62306 1.76628 1.83902 1.93207 1.83546 1.79469 1.59806 1.17116 0.94174 0.80362 0.93973 1.91520 1.89923 1.40961 1.88777 1.21118 1.04639 0.90411 1.04809 1.20395 0.96104 0.96500 0.96211 1.17287 0.97071 0.94123 0.96542 1.91314 1.62248 1.96776 1.63486 0.87980 0.86515 0.87667 0.84441 0.84302 0.84082 0.87252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.20 12.31 55.55 0.68 -16.51 16 2 C 0.03 0.73 4.90 -17.32 -0.08 0.65 16 3 Si 1.07 18.42 30.01 -169.99 -5.10 13.32 16 4 H -0.27 -4.58 7.11 56.52 0.40 -4.18 16 5 H -0.27 -4.46 7.11 56.52 0.40 -4.05 16 6 H -0.27 -4.47 7.11 56.52 0.40 -4.07 16 7 C -0.46 -10.81 8.68 -37.90 -0.33 -11.14 16 8 H 0.09 2.13 7.80 -52.49 -0.41 1.72 16 9 C 0.07 1.73 5.30 -106.74 -0.57 1.17 16 10 C -0.21 -4.60 7.92 -39.29 -0.31 -4.91 16 11 C -0.05 -0.89 9.35 -39.65 -0.37 -1.26 16 12 C -0.22 -4.17 5.90 -104.65 -0.62 -4.79 16 13 C 0.09 1.48 5.88 -104.89 -0.62 0.86 16 14 C -0.16 -2.33 9.43 -39.18 -0.37 -2.70 16 15 C -0.03 -0.43 9.41 -39.65 -0.37 -0.80 16 16 C -0.27 -4.01 5.39 -104.45 -0.56 -4.57 16 17 C 0.52 7.22 3.02 36.01 0.11 7.33 16 18 F -0.18 -2.30 15.96 2.25 0.04 -2.26 16 19 F -0.18 -2.58 17.04 2.25 0.04 -2.55 16 20 F -0.18 -2.59 17.04 2.25 0.04 -2.55 16 21 C 0.16 2.55 7.12 -39.47 -0.28 2.27 16 22 F -0.13 -2.10 16.44 2.25 0.04 -2.06 16 23 C -0.19 -3.05 9.40 -39.11 -0.37 -3.42 16 24 C -0.07 -1.48 9.33 -39.61 -0.37 -1.85 16 25 C -0.03 -0.69 7.26 -39.07 -0.28 -0.98 16 26 F -0.16 -3.67 16.70 2.25 0.04 -3.63 16 27 H 0.31 7.12 6.79 -40.82 -0.28 6.85 16 28 H 0.12 2.55 6.52 -52.48 -0.34 2.20 16 29 H 0.11 1.71 6.17 -52.49 -0.32 1.38 16 30 H 0.14 1.75 6.18 -52.48 -0.32 1.43 16 31 H 0.14 1.49 7.14 -52.48 -0.37 1.12 16 32 H 0.14 2.13 6.18 -52.48 -0.32 1.81 16 33 H 0.11 1.97 6.17 -52.49 -0.32 1.65 16 LS Contribution 308.05 15.07 4.64 4.64 Total: -1.00 -23.43 308.05 -6.48 -29.91 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -1.49 Total: 5.85 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: -5.39 Total: -24.15 kcal Atomic # 7 Polarization: -17.20 SS G_CDS: 0.68 Total: -16.51 kcal Atomic # 9 Polarization: -13.24 SS G_CDS: 0.19 Total: -13.05 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.10 Total: 13.32 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -23.43 -6.48 -29.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241914260.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.456 kcal (2) G-P(sol) polarization free energy of solvation -23.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds