Wall clock time and date at job start Tue Mar 31 2020 15:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86802 * 119.99750 * 2 1 4 4 H 1.48497 * 109.47314 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.46892 * 120.00367 * 3 2 1 6 6 H 1.48501 * 109.46859 * 239.99893 * 3 2 1 7 7 C 1.40005 * 119.99704 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99756 * 206.58132 * 7 2 1 9 9 C 1.40942 * 120.00425 * 26.58905 * 7 2 1 10 10 C 1.40943 * 120.13773 * 25.34885 * 9 7 2 11 11 C 1.36194 * 119.90247 * 180.02562 * 10 9 7 12 12 C 1.40013 * 120.18405 * 0.02562 * 11 10 9 13 13 C 1.48010 * 119.85798 * 179.97438 * 12 11 10 14 14 C 1.39610 * 120.13447 * 359.71654 * 13 12 11 15 15 C 1.37928 * 119.90682 * 179.79084 * 14 13 12 16 16 C 1.38369 * 120.17008 * 0.46766 * 15 14 13 17 17 C 1.50700 * 119.86524 * 179.76458 * 16 15 14 18 18 F 1.39892 * 109.47452 * 0.02562 * 17 16 15 19 19 F 1.39902 * 109.47004 * 120.02897 * 17 16 15 20 20 F 1.39902 * 109.46890 * 240.01985 * 17 16 15 21 21 C 1.38585 * 120.26437 * 359.79102 * 16 15 14 22 22 F 1.35094 * 119.95611 * 179.97438 * 21 16 15 23 23 C 1.38184 * 120.09058 * 359.97160 * 21 16 15 24 24 C 1.39772 * 120.27984 * 359.97150 * 12 11 10 25 25 C 1.36580 * 120.09444 * 359.76171 * 24 12 11 26 26 F 1.35103 * 120.09444 * 180.25438 * 25 24 12 27 27 H 0.97001 * 120.00233 * 185.88866 * 1 2 3 28 28 H 1.08003 * 120.04592 * 0.03252 * 10 9 7 29 29 H 1.08001 * 119.90550 * 179.97438 * 11 10 9 30 30 H 1.08006 * 120.04777 * 0.03205 * 14 13 12 31 31 H 1.08008 * 119.91306 * 180.23333 * 15 14 13 32 32 H 1.08003 * 120.08893 * 179.97438 * 23 21 16 33 33 H 1.07994 * 119.95620 * 180.02562 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 1.2771 2.7465 -0.0006 5 1 3.0959 1.6964 1.2124 6 1 3.0959 1.6964 -1.2125 7 6 2.0081 -1.2125 0.0005 8 1 3.0025 -1.2618 0.4191 9 6 1.4152 -2.3688 -0.5452 10 6 0.4163 -2.2531 -1.5328 11 6 -0.1537 -3.3736 -2.0565 12 6 0.2494 -4.6401 -1.6163 13 6 -0.3754 -5.8530 -2.1900 14 6 -1.3688 -5.7359 -3.1638 15 6 -1.9448 -6.8695 -3.6984 16 6 -1.5474 -8.1220 -3.2650 17 6 -2.1851 -9.3558 -3.8499 18 9 -3.1393 -8.9810 -4.8017 19 9 -1.2030 -10.1440 -4.4595 20 9 -2.8047 -10.0879 -2.8315 21 6 -0.5656 -8.2463 -2.2948 22 9 -0.1827 -9.4723 -1.8758 23 6 0.0222 -7.1181 -1.7553 24 6 1.2394 -4.7638 -0.6373 25 6 1.8226 -3.6479 -0.1082 26 9 2.7831 -3.7676 0.8343 27 1 -0.4850 -0.8356 0.0862 28 1 0.1035 -1.2772 -1.8738 29 1 -0.9195 -3.2849 -2.8130 30 1 -1.6832 -4.7592 -3.5010 31 1 -2.7108 -6.7791 -4.4545 32 1 0.7870 -7.2150 -0.9989 33 1 1.5466 -5.7433 -0.3019 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241914260.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:03 Heat of formation + Delta-G solvation = -222.613536 kcal Electronic energy + Delta-G solvation = -26495.338532 eV Core-core repulsion = 21705.521796 eV Total energy + Delta-G solvation = -4789.816736 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.28864 -50.18690 -49.37830 -48.72264 -48.70907 -40.66961 -39.14002 -36.27622 -33.66000 -32.18454 -31.05171 -30.95520 -28.04984 -26.02675 -24.53860 -23.82268 -22.62098 -22.08273 -20.17901 -19.69967 -19.58883 -19.49451 -18.63087 -17.57943 -17.24662 -16.87806 -16.81411 -16.66314 -16.20591 -15.95188 -15.66686 -15.56965 -15.46754 -15.31776 -15.14038 -14.86961 -14.86673 -14.69851 -14.37282 -14.33485 -13.98518 -13.91410 -13.54064 -13.20930 -12.86528 -12.75125 -12.65215 -12.21654 -11.98015 -11.78112 -11.58269 -11.12513 -10.65998 -10.00957 -9.73593 -9.47407 -9.18805 -6.62092 -0.57906 0.05637 0.71071 0.75943 1.50375 1.55249 1.57577 1.80318 2.22297 2.24994 2.59035 2.64184 2.81239 3.01652 3.27771 3.34100 3.58182 3.61944 3.91523 4.02808 4.13501 4.17319 4.28472 4.61497 4.70372 4.72470 4.84709 4.90453 4.98526 5.21099 5.27201 5.41896 5.53663 5.61888 5.69276 5.85831 5.88751 6.07367 6.48178 6.60293 7.78686 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.028021 B = 0.002726 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.019146 B =10269.743198 C =10996.251880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.010 3.990 3 Si 1.116 2.884 4 H -0.264 1.264 5 H -0.261 1.261 6 H -0.259 1.259 7 C -0.514 4.514 8 H 0.076 0.924 9 C 0.053 3.947 10 C -0.222 4.222 11 C -0.045 4.045 12 C -0.200 4.200 13 C 0.066 3.934 14 C -0.146 4.146 15 C -0.023 4.023 16 C -0.263 4.263 17 C 0.519 3.481 18 F -0.168 7.168 19 F -0.181 7.181 20 F -0.182 7.182 21 C 0.150 3.850 22 F -0.136 7.136 23 C -0.186 4.186 24 C -0.077 4.077 25 C -0.066 4.066 26 F -0.169 7.169 27 H 0.292 0.708 28 H 0.110 0.890 29 H 0.142 0.858 30 H 0.161 0.839 31 H 0.174 0.826 32 H 0.144 0.856 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.944 -8.608 -7.583 12.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.211 4.211 3 Si 0.931 3.069 4 H -0.188 1.188 5 H -0.185 1.185 6 H -0.184 1.184 7 C -0.540 4.540 8 H 0.094 0.906 9 C 0.049 3.951 10 C -0.241 4.241 11 C -0.064 4.064 12 C -0.201 4.201 13 C 0.066 3.934 14 C -0.164 4.164 15 C -0.041 4.041 16 C -0.266 4.266 17 C 0.465 3.535 18 F -0.150 7.150 19 F -0.163 7.163 20 F -0.163 7.163 21 C 0.130 3.870 22 F -0.114 7.114 23 C -0.205 4.205 24 C -0.096 4.096 25 C -0.085 4.085 26 F -0.149 7.149 27 H 0.105 0.895 28 H 0.128 0.872 29 H 0.160 0.840 30 H 0.179 0.821 31 H 0.191 0.809 32 H 0.162 0.838 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.189 -7.078 -7.590 11.603 hybrid contribution 0.607 -2.396 0.687 2.565 sum -4.582 -9.474 -6.903 12.586 Atomic orbital electron populations 1.70574 1.08685 1.33986 1.26717 1.28566 0.95579 1.07255 0.89663 0.83008 0.74961 0.69542 0.79349 1.18778 1.18535 1.18371 1.20943 1.03761 0.95433 1.33862 0.90613 1.18136 0.92997 0.91716 0.92206 1.20706 1.03716 0.98559 1.01106 1.20850 0.97273 0.90794 0.97434 1.17879 1.04711 0.91979 1.05508 1.18803 0.91829 0.90949 0.91803 1.21493 0.97129 1.00147 0.97583 1.21038 0.97322 0.88639 0.97096 1.20022 1.05565 0.94813 1.06155 1.17979 0.76305 0.83297 0.75883 1.93163 1.65288 1.91146 1.65361 1.93210 1.62493 1.76663 1.83911 1.93210 1.83564 1.79504 1.60022 1.17199 0.94882 0.80209 0.94694 1.91520 1.90034 1.40996 1.88894 1.21198 1.04349 0.90464 1.04487 1.20670 0.96036 0.96621 0.96285 1.17636 0.98218 0.95031 0.97652 1.91268 1.62763 1.96836 1.63998 0.89514 0.87208 0.84002 0.82147 0.80891 0.83793 0.85370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -37.01 12.31 21.84 0.27 -36.74 16 2 C 0.01 0.46 4.90 85.27 0.42 0.87 16 3 Si 1.12 38.27 30.01 68.60 2.06 40.33 16 4 H -0.26 -8.75 7.11 99.48 0.71 -8.04 16 5 H -0.26 -8.45 7.11 99.48 0.71 -7.75 16 6 H -0.26 -8.40 7.11 99.48 0.71 -7.69 16 7 C -0.51 -25.66 8.68 23.36 0.20 -25.46 16 8 H 0.08 3.83 7.80 -2.91 -0.02 3.81 16 9 C 0.05 2.61 5.30 -21.24 -0.11 2.50 16 10 C -0.22 -9.74 7.92 22.46 0.18 -9.57 16 11 C -0.05 -1.67 9.35 22.22 0.21 -1.46 16 12 C -0.20 -7.26 5.90 -19.88 -0.12 -7.38 16 13 C 0.07 1.99 5.88 -20.04 -0.12 1.88 16 14 C -0.15 -3.49 9.43 22.53 0.21 -3.28 16 15 C -0.02 -0.49 9.41 22.23 0.21 -0.29 16 16 C -0.26 -6.59 5.39 -19.75 -0.11 -6.70 16 17 C 0.52 12.55 3.02 71.24 0.22 12.76 16 18 F -0.17 -3.57 15.96 44.97 0.72 -2.86 16 19 F -0.18 -4.66 17.04 44.97 0.77 -3.89 16 20 F -0.18 -4.68 17.04 44.97 0.77 -3.92 16 21 C 0.15 4.21 7.12 22.34 0.16 4.36 16 22 F -0.14 -3.95 16.44 44.97 0.74 -3.22 16 23 C -0.19 -5.44 9.40 22.57 0.21 -5.22 16 24 C -0.08 -3.12 9.33 22.25 0.21 -2.91 16 25 C -0.07 -3.10 7.26 22.60 0.16 -2.94 16 26 F -0.17 -8.22 16.70 44.97 0.75 -7.47 16 27 H 0.29 14.32 6.79 -92.71 -0.63 13.69 16 28 H 0.11 4.93 6.52 -2.91 -0.02 4.91 16 29 H 0.14 4.08 6.17 -2.91 -0.02 4.06 16 30 H 0.16 3.15 6.18 -2.91 -0.02 3.13 16 31 H 0.17 2.60 7.14 -2.91 -0.02 2.58 16 32 H 0.14 4.07 6.18 -2.91 -0.02 4.05 16 33 H 0.13 4.54 6.17 -2.91 -0.02 4.52 16 Total: -1.00 -52.67 308.05 9.36 -43.32 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 1.36 Total: 17.27 kcal Atomic # 6 Polarization: -44.76 SS G_CDS: 1.93 Total: -42.83 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.27 Total: -36.74 kcal Atomic # 9 Polarization: -25.09 SS G_CDS: 3.74 Total: -21.34 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 2.06 Total: 40.33 kcal Total: -52.67 9.36 -43.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241914260.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.297 kcal (2) G-P(sol) polarization free energy of solvation -52.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds