Wall clock time and date at job start Tue Mar 31 2020 15:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30856 * 1 3 3 Si 1.86803 * 119.99893 * 2 1 4 4 H 1.48501 * 109.46804 * 274.39941 * 3 2 1 5 5 H 1.48498 * 109.47156 * 34.39956 * 3 2 1 6 6 H 1.48501 * 109.47160 * 154.40349 * 3 2 1 7 7 C 1.39919 * 120.00151 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00118 * 159.22122 * 7 2 1 9 9 C 1.41321 * 119.99921 * 339.49642 * 7 2 1 10 10 C 1.40538 * 120.20914 * 143.23868 * 9 7 2 11 11 C 1.38671 * 119.65587 * 179.74207 * 10 9 7 12 12 C 1.48392 * 119.96512 * 180.25477 * 11 10 9 13 13 C 1.39371 * 120.10587 * 0.02562 * 12 11 10 14 14 C 1.38008 * 119.92740 * 179.76313 * 13 12 11 15 15 C 1.38306 * 120.14676 * 0.49163 * 14 13 12 16 16 C 1.50700 * 119.89427 * 179.74270 * 15 14 13 17 17 F 1.39898 * 109.46669 * 0.02562 * 16 15 14 18 18 F 1.39897 * 109.47606 * 120.01667 * 16 15 14 19 19 F 1.39900 * 109.47221 * 240.02274 * 16 15 14 20 20 C 1.38528 * 120.21814 * 359.75919 * 15 14 13 21 21 F 1.35103 * 119.96374 * 179.97438 * 20 15 14 22 22 C 1.38265 * 120.06818 * 0.02562 * 20 15 14 23 23 C 1.39814 * 120.06986 * 0.53358 * 11 10 9 24 24 C 1.38233 * 120.42198 * 359.72071 * 23 11 10 25 25 C 1.38065 * 120.35021 * 0.02562 * 24 23 11 26 26 F 1.35100 * 120.04546 * 180.02562 * 25 24 23 27 27 H 0.97001 * 120.00286 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.16657 * 0.02562 * 10 9 7 29 29 H 1.07997 * 120.03328 * 359.97438 * 13 12 11 30 30 H 1.07999 * 119.92921 * 180.20756 * 14 13 12 31 31 H 1.07998 * 120.07305 * 179.97438 * 22 20 15 32 32 H 1.07998 * 119.79072 * 179.73944 * 23 11 10 33 33 H 1.08008 * 119.82370 * 179.97438 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.3970 2.1001 -1.3960 5 1 1.4896 2.6241 0.7910 6 1 3.5836 1.4152 0.6049 7 6 2.0082 -1.2117 -0.0005 8 1 3.0355 -1.2420 -0.3324 9 6 1.3687 -2.3970 0.4276 10 6 1.6443 -3.6189 -0.2097 11 6 1.0143 -4.7759 0.2233 12 6 1.3044 -6.0708 -0.4409 13 6 2.2096 -6.1263 -1.4992 14 6 2.4803 -7.3333 -2.1111 15 6 1.8477 -8.4863 -1.6831 16 6 2.1433 -9.8003 -2.3592 17 9 3.0797 -9.5997 -3.3790 18 9 2.6604 -10.7012 -1.4220 19 9 0.9643 -10.3200 -2.9043 20 6 0.9431 -8.4373 -0.6352 21 9 0.3277 -9.5667 -0.2216 22 6 0.6684 -7.2336 -0.0128 23 6 0.1018 -4.7228 1.2813 24 6 -0.1755 -3.5217 1.9068 25 6 0.4456 -2.3601 1.4933 26 9 0.1704 -1.1897 2.1094 27 1 -0.4850 0.8400 0.0004 28 1 2.3464 -3.6573 -1.0293 29 1 2.7011 -5.2262 -1.8378 30 1 3.1843 -7.3769 -2.9290 31 1 -0.0372 -7.1952 0.8039 32 1 -0.3894 -5.6260 1.6121 33 1 -0.8825 -3.4917 2.7229 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241914459.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:58 Heat of formation + Delta-G solvation = -199.414841 kcal Electronic energy + Delta-G solvation = -26595.779180 eV Core-core repulsion = 21806.968415 eV Total energy + Delta-G solvation = -4788.810765 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.26457 -49.07004 -47.72086 -47.66532 -47.18648 -39.44051 -37.27785 -33.98399 -32.50054 -31.02464 -30.09704 -28.90298 -25.76756 -25.32393 -23.17621 -22.57841 -20.96899 -20.55090 -18.71311 -18.56124 -18.47004 -17.80922 -16.70090 -16.32937 -16.12330 -15.75776 -15.35156 -14.94489 -14.70558 -14.53502 -14.51327 -14.23876 -14.12046 -13.92698 -13.88568 -13.84380 -13.59478 -13.17700 -12.93424 -12.72236 -12.63794 -12.14657 -11.76630 -11.62330 -11.50627 -11.35125 -11.24372 -10.89637 -10.84497 -10.41902 -9.63743 -9.44432 -9.10338 -8.89494 -7.86935 -7.20772 -6.96191 -4.62273 0.58900 1.11658 2.41007 2.47854 2.57215 2.98843 3.02911 3.07902 3.55984 3.60873 3.84634 3.85610 4.06798 4.33552 4.44772 4.66909 4.87232 5.11747 5.18060 5.21734 5.52231 5.73655 5.75748 5.81465 5.95533 6.06653 6.19305 6.28103 6.47803 6.70972 6.83772 7.00113 7.16425 7.29232 7.45552 7.54994 7.86133 8.19584 8.54174 8.63813 10.03836 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.024342 B = 0.002869 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.991033 B = 9757.134233 C =10607.028637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.079 3.921 3 Si 0.909 3.091 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.471 4.471 8 H 0.087 0.913 9 C 0.081 3.919 10 C -0.160 4.160 11 C -0.069 4.069 12 C 0.058 3.942 13 C -0.134 4.134 14 C -0.041 4.041 15 C -0.249 4.249 16 C 0.515 3.485 17 F -0.177 7.177 18 F -0.177 7.177 19 F -0.176 7.176 20 C 0.153 3.847 21 F -0.130 7.130 22 C -0.163 4.163 23 C -0.184 4.184 24 C -0.138 4.138 25 C 0.056 3.944 26 F -0.139 7.139 27 H 0.285 0.715 28 H 0.112 0.888 29 H 0.147 0.853 30 H 0.145 0.855 31 H 0.149 0.851 32 H 0.105 0.895 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.862 -11.548 -2.974 12.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.141 4.141 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.499 4.499 8 H 0.105 0.895 9 C 0.078 3.922 10 C -0.180 4.180 11 C -0.069 4.069 12 C 0.058 3.942 13 C -0.152 4.152 14 C -0.059 4.059 15 C -0.251 4.251 16 C 0.461 3.539 17 F -0.158 7.158 18 F -0.158 7.158 19 F -0.158 7.158 20 C 0.133 3.867 21 F -0.109 7.109 22 C -0.181 4.181 23 C -0.203 4.203 24 C -0.157 4.157 25 C 0.035 3.965 26 F -0.117 7.117 27 H 0.096 0.904 28 H 0.130 0.870 29 H 0.164 0.836 30 H 0.162 0.838 31 H 0.166 0.834 32 H 0.123 0.877 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.615 -11.426 -2.969 12.092 hybrid contribution 0.019 0.542 0.057 0.546 sum 2.634 -10.884 -2.911 11.571 Atomic orbital electron populations 1.69755 1.07844 1.30158 1.32204 1.25806 0.94642 1.01374 0.92314 0.86275 0.80822 0.80599 0.79010 1.19540 1.19918 1.18295 1.19364 0.99496 0.91161 1.39888 0.89529 1.17500 0.91321 0.93405 0.89947 1.21046 1.04295 0.91434 1.01180 1.18252 1.00482 0.90386 0.97825 1.19126 0.90758 0.92729 0.91615 1.21416 0.99313 0.97994 0.96488 1.20799 0.96577 0.90321 0.98221 1.19910 1.07688 0.94084 1.03431 1.18065 0.74282 0.84892 0.76629 1.93153 1.66300 1.95043 1.61300 1.93217 1.87105 1.70269 1.65211 1.93220 1.47721 1.88355 1.86482 1.17145 0.92746 0.82971 0.93842 1.91541 1.80908 1.49173 1.89242 1.21246 1.03878 0.90048 1.02975 1.20252 1.03429 0.96463 1.00205 1.20563 1.01341 0.92308 1.01469 1.18045 1.02889 0.80286 0.95259 1.91347 1.92485 1.46899 1.81015 0.90384 0.87043 0.83555 0.83772 0.83354 0.87673 0.87464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.59 11.15 55.55 0.62 -18.98 16 2 C 0.08 1.91 4.48 -17.34 -0.08 1.84 16 3 Si 0.91 18.07 29.61 -169.99 -5.03 13.04 16 4 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 5 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 6 H -0.26 -5.10 7.11 56.52 0.40 -4.69 16 7 C -0.47 -11.57 8.91 -37.78 -0.34 -11.90 16 8 H 0.09 2.00 7.93 -52.49 -0.42 1.59 16 9 C 0.08 1.97 5.40 -106.80 -0.58 1.39 16 10 C -0.16 -3.35 9.16 -38.56 -0.35 -3.70 16 11 C -0.07 -1.31 5.87 -104.97 -0.62 -1.93 16 12 C 0.06 0.92 5.87 -104.91 -0.62 0.30 16 13 C -0.13 -1.85 9.42 -39.24 -0.37 -2.22 16 14 C -0.04 -0.51 9.42 -39.64 -0.37 -0.88 16 15 C -0.25 -3.33 5.38 -104.49 -0.56 -3.90 16 16 C 0.52 6.65 3.02 36.01 0.11 6.75 16 17 F -0.18 -2.11 15.96 2.25 0.04 -2.07 16 18 F -0.18 -2.36 17.04 2.25 0.04 -2.32 16 19 F -0.18 -2.37 17.04 2.25 0.04 -2.34 16 20 C 0.15 2.17 7.12 -39.46 -0.28 1.89 16 21 F -0.13 -1.87 16.44 2.25 0.04 -1.83 16 22 C -0.16 -2.37 9.40 -39.18 -0.37 -2.73 16 23 C -0.18 -3.50 9.43 -38.99 -0.37 -3.86 16 24 C -0.14 -2.89 9.99 -39.65 -0.40 -3.28 16 25 C 0.06 1.35 6.69 -38.58 -0.26 1.09 16 26 F -0.14 -3.54 14.26 2.25 0.03 -3.51 16 27 H 0.29 6.62 8.30 -40.82 -0.34 6.28 16 28 H 0.11 2.08 6.18 -52.49 -0.32 1.76 16 29 H 0.15 1.86 6.19 -52.49 -0.32 1.54 16 30 H 0.14 1.42 7.14 -52.49 -0.37 1.04 16 31 H 0.15 1.97 6.19 -52.49 -0.32 1.65 16 32 H 0.11 1.68 6.18 -52.49 -0.32 1.36 16 33 H 0.11 2.01 8.06 -52.48 -0.42 1.59 16 LS Contribution 308.57 15.07 4.65 4.65 Total: -1.00 -25.58 308.57 -6.67 -32.25 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -1.65 Total: 2.25 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: -5.44 Total: -21.15 kcal Atomic # 7 Polarization: -19.59 SS G_CDS: 0.62 Total: -18.98 kcal Atomic # 9 Polarization: -12.25 SS G_CDS: 0.18 Total: -12.06 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -25.58 -6.67 -32.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241914459.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.165 kcal (2) G-P(sol) polarization free energy of solvation -25.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds