Wall clock time and date at job start Tue Mar 31 2020 15:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30856 * 1 3 3 Si 1.86803 * 119.99893 * 2 1 4 4 H 1.48501 * 109.46804 * 274.39941 * 3 2 1 5 5 H 1.48498 * 109.47156 * 34.39956 * 3 2 1 6 6 H 1.48501 * 109.47160 * 154.40349 * 3 2 1 7 7 C 1.39919 * 120.00151 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00118 * 159.22122 * 7 2 1 9 9 C 1.41321 * 119.99921 * 339.49642 * 7 2 1 10 10 C 1.40538 * 120.20914 * 143.23868 * 9 7 2 11 11 C 1.38671 * 119.65587 * 179.74207 * 10 9 7 12 12 C 1.48392 * 119.96512 * 180.25477 * 11 10 9 13 13 C 1.39371 * 120.10587 * 0.02562 * 12 11 10 14 14 C 1.38008 * 119.92740 * 179.76313 * 13 12 11 15 15 C 1.38306 * 120.14676 * 0.49163 * 14 13 12 16 16 C 1.50700 * 119.89427 * 179.74270 * 15 14 13 17 17 F 1.39898 * 109.46669 * 0.02562 * 16 15 14 18 18 F 1.39897 * 109.47606 * 120.01667 * 16 15 14 19 19 F 1.39900 * 109.47221 * 240.02274 * 16 15 14 20 20 C 1.38528 * 120.21814 * 359.75919 * 15 14 13 21 21 F 1.35103 * 119.96374 * 179.97438 * 20 15 14 22 22 C 1.38265 * 120.06818 * 0.02562 * 20 15 14 23 23 C 1.39814 * 120.06986 * 0.53358 * 11 10 9 24 24 C 1.38233 * 120.42198 * 359.72071 * 23 11 10 25 25 C 1.38065 * 120.35021 * 0.02562 * 24 23 11 26 26 F 1.35100 * 120.04546 * 180.02562 * 25 24 23 27 27 H 0.97001 * 120.00286 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.16657 * 0.02562 * 10 9 7 29 29 H 1.07997 * 120.03328 * 359.97438 * 13 12 11 30 30 H 1.07999 * 119.92921 * 180.20756 * 14 13 12 31 31 H 1.07998 * 120.07305 * 179.97438 * 22 20 15 32 32 H 1.07998 * 119.79072 * 179.73944 * 23 11 10 33 33 H 1.08008 * 119.82370 * 179.97438 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.3970 2.1001 -1.3960 5 1 1.4896 2.6241 0.7910 6 1 3.5836 1.4152 0.6049 7 6 2.0082 -1.2117 -0.0005 8 1 3.0355 -1.2420 -0.3324 9 6 1.3687 -2.3970 0.4276 10 6 1.6443 -3.6189 -0.2097 11 6 1.0143 -4.7759 0.2233 12 6 1.3044 -6.0708 -0.4409 13 6 2.2096 -6.1263 -1.4992 14 6 2.4803 -7.3333 -2.1111 15 6 1.8477 -8.4863 -1.6831 16 6 2.1433 -9.8003 -2.3592 17 9 3.0797 -9.5997 -3.3790 18 9 2.6604 -10.7012 -1.4220 19 9 0.9643 -10.3200 -2.9043 20 6 0.9431 -8.4373 -0.6352 21 9 0.3277 -9.5667 -0.2216 22 6 0.6684 -7.2336 -0.0128 23 6 0.1018 -4.7228 1.2813 24 6 -0.1755 -3.5217 1.9068 25 6 0.4456 -2.3601 1.4933 26 9 0.1704 -1.1897 2.1094 27 1 -0.4850 0.8400 0.0004 28 1 2.3464 -3.6573 -1.0293 29 1 2.7011 -5.2262 -1.8378 30 1 3.1843 -7.3769 -2.9290 31 1 -0.0372 -7.1952 0.8039 32 1 -0.3894 -5.6260 1.6121 33 1 -0.8825 -3.4917 2.7229 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241914459.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:58 Heat of formation + Delta-G solvation = -208.754462 kcal Electronic energy + Delta-G solvation = -26596.184177 eV Core-core repulsion = 21806.968415 eV Total energy + Delta-G solvation = -4789.215762 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.28990 -50.17102 -49.01424 -48.72183 -48.70868 -40.67145 -38.78227 -35.64847 -33.82594 -32.35376 -31.56745 -30.30448 -27.34157 -26.63547 -24.40634 -23.85639 -22.49475 -22.01328 -19.84131 -19.58855 -19.49976 -19.32502 -18.09633 -17.79008 -17.50696 -16.88722 -16.86474 -16.38659 -16.09823 -15.74310 -15.65521 -15.56458 -15.56202 -15.13499 -15.01531 -14.86357 -14.74787 -14.50646 -14.29793 -14.09498 -13.95246 -13.67354 -13.28938 -13.17671 -13.03053 -12.72929 -12.68466 -12.40362 -12.28780 -11.96064 -11.27153 -11.00298 -10.55628 -9.99935 -9.54017 -8.80937 -8.69205 -6.43468 -0.61517 0.02811 0.81828 0.90993 1.38706 1.45198 1.52864 1.53053 2.20274 2.30478 2.56437 2.77596 2.78863 2.99120 3.30299 3.46301 3.56529 3.68581 4.00288 4.05552 4.16136 4.27271 4.39894 4.66831 4.68963 4.78268 4.81932 4.98440 5.05473 5.20933 5.38383 5.48957 5.62311 5.68889 5.85987 5.88762 6.17601 6.43568 6.82246 6.86793 8.31962 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.024342 B = 0.002869 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.991033 B = 9757.134233 C =10607.028637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.040 3.960 3 Si 0.973 3.027 4 H -0.259 1.259 5 H -0.275 1.275 6 H -0.257 1.257 7 C -0.507 4.507 8 H 0.089 0.911 9 C 0.053 3.947 10 C -0.166 4.166 11 C -0.061 4.061 12 C 0.035 3.965 13 C -0.128 4.128 14 C -0.030 4.030 15 C -0.243 4.243 16 C 0.519 3.481 17 F -0.168 7.168 18 F -0.179 7.179 19 F -0.180 7.180 20 C 0.144 3.856 21 F -0.132 7.132 22 C -0.156 4.156 23 C -0.177 4.177 24 C -0.141 4.141 25 C 0.011 3.989 26 F -0.157 7.157 27 H 0.287 0.713 28 H 0.128 0.872 29 H 0.156 0.844 30 H 0.174 0.826 31 H 0.160 0.840 32 H 0.141 0.859 33 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.647 -13.404 -3.839 14.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.177 4.177 3 Si 0.794 3.206 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.180 1.180 7 C -0.536 4.536 8 H 0.107 0.893 9 C 0.050 3.950 10 C -0.185 4.185 11 C -0.061 4.061 12 C 0.035 3.965 13 C -0.146 4.146 14 C -0.048 4.048 15 C -0.245 4.245 16 C 0.464 3.536 17 F -0.150 7.150 18 F -0.160 7.160 19 F -0.161 7.161 20 C 0.124 3.876 21 F -0.110 7.110 22 C -0.174 4.174 23 C -0.196 4.196 24 C -0.160 4.160 25 C -0.009 4.009 26 F -0.136 7.136 27 H 0.097 0.903 28 H 0.146 0.854 29 H 0.174 0.826 30 H 0.192 0.808 31 H 0.177 0.823 32 H 0.158 0.842 33 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.406 -13.305 -3.838 14.260 hybrid contribution -0.223 0.772 0.278 0.850 sum 3.183 -12.533 -3.560 13.412 Atomic orbital electron populations 1.69817 1.09224 1.30827 1.34451 1.26579 0.95224 1.04337 0.91515 0.85321 0.79366 0.76567 0.79367 1.18353 1.19995 1.18043 1.19623 0.99911 0.92289 1.41781 0.89322 1.17870 0.92045 0.94652 0.90436 1.21296 1.04641 0.91134 1.01475 1.18508 0.99084 0.91291 0.97234 1.18960 0.92865 0.91586 0.93080 1.21569 0.98404 0.99020 0.95622 1.21063 0.96293 0.89137 0.98325 1.20121 1.06929 0.94704 1.02793 1.17976 0.74324 0.84563 0.76701 1.93174 1.65934 1.94963 1.60891 1.93218 1.87117 1.70327 1.65374 1.93219 1.47986 1.88370 1.86510 1.17190 0.93235 0.82876 0.94295 1.91542 1.81000 1.49152 1.89316 1.21290 1.03497 0.89662 1.02963 1.20717 1.02608 0.96931 0.99300 1.20862 1.01191 0.92008 1.01928 1.18470 1.04946 0.80760 0.96730 1.91281 1.92843 1.48042 1.81428 0.90284 0.85376 0.82633 0.80845 0.82251 0.84181 0.85668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.96 11.15 21.82 0.24 -42.72 16 2 C 0.04 1.98 4.48 85.25 0.38 2.36 16 3 Si 0.97 37.94 29.61 68.60 2.03 39.97 16 4 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 5 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 6 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 7 C -0.51 -25.74 8.91 23.44 0.21 -25.54 16 8 H 0.09 4.24 7.93 -2.91 -0.02 4.21 16 9 C 0.05 2.62 5.40 -21.27 -0.11 2.50 16 10 C -0.17 -6.91 9.16 22.93 0.21 -6.70 16 11 C -0.06 -2.21 5.87 -20.09 -0.12 -2.33 16 12 C 0.04 1.02 5.87 -20.05 -0.12 0.91 16 13 C -0.13 -3.15 9.42 22.49 0.21 -2.94 16 14 C -0.03 -0.64 9.42 22.23 0.21 -0.43 16 15 C -0.24 -5.71 5.38 -19.78 -0.11 -5.82 16 16 C 0.52 11.79 3.02 71.24 0.22 12.01 16 17 F -0.17 -3.44 15.96 44.97 0.72 -2.72 16 18 F -0.18 -4.30 17.04 44.97 0.77 -3.53 16 19 F -0.18 -4.36 17.04 44.97 0.77 -3.59 16 20 C 0.14 3.66 7.12 22.35 0.16 3.82 16 21 F -0.13 -3.44 16.44 44.97 0.74 -2.70 16 22 C -0.16 -4.06 9.40 22.53 0.21 -3.85 16 23 C -0.18 -6.40 9.43 22.65 0.21 -6.18 16 24 C -0.14 -5.88 9.99 22.23 0.22 -5.66 16 25 C 0.01 0.57 6.69 22.92 0.15 0.72 16 26 F -0.16 -8.38 14.26 44.97 0.64 -7.74 16 27 H 0.29 13.89 8.30 -92.71 -0.77 13.12 16 28 H 0.13 4.70 6.18 -2.91 -0.02 4.68 16 29 H 0.16 3.52 6.19 -2.91 -0.02 3.51 16 30 H 0.17 2.62 7.14 -2.91 -0.02 2.60 16 31 H 0.16 3.70 6.19 -2.91 -0.02 3.69 16 32 H 0.14 4.02 6.18 -2.91 -0.02 4.00 16 33 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 Total: -1.00 -56.56 308.57 9.06 -47.50 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 1.21 Total: 12.65 kcal Atomic # 6 Polarization: -39.07 SS G_CDS: 1.94 Total: -37.13 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: 0.24 Total: -42.72 kcal Atomic # 9 Polarization: -23.91 SS G_CDS: 3.63 Total: -20.28 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.97 kcal Total: -56.56 9.06 -47.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241914459.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.250 kcal (2) G-P(sol) polarization free energy of solvation -56.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds