Wall clock time and date at job start Tue Mar 31 2020 15:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30844 * 1 3 3 Si 1.86793 * 120.00238 * 2 1 4 4 H 1.48495 * 109.47579 * 240.00233 * 3 2 1 5 5 H 1.48506 * 109.47088 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47652 * 119.99433 * 3 2 1 7 7 C 1.39933 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00392 * 197.79860 * 7 2 1 9 9 C 1.41322 * 119.99881 * 17.80413 * 7 2 1 10 10 C 1.40779 * 120.20583 * 24.62942 * 9 7 2 11 11 C 1.37616 * 120.01780 * 180.02562 * 10 9 7 12 12 C 1.38503 * 120.45706 * 0.02562 * 11 10 9 13 13 C 1.39551 * 120.41848 * 359.96313 * 12 11 10 14 14 C 1.48396 * 120.01683 * 180.02562 * 13 12 11 15 15 C 1.39367 * 120.10838 * 130.25300 * 14 13 12 16 16 C 1.38003 * 119.92602 * 180.32012 * 15 14 13 17 17 C 1.38313 * 120.14638 * 359.70104 * 16 15 14 18 18 C 1.50706 * 119.88674 * 179.97438 * 17 16 15 19 19 F 1.39900 * 109.47296 * 0.02562 * 18 17 16 20 20 F 1.39898 * 109.46919 * 120.02414 * 18 17 16 21 21 F 1.39901 * 109.46638 * 240.01589 * 18 17 16 22 22 C 1.38519 * 120.22127 * 359.97438 * 17 16 15 23 23 F 1.35095 * 119.96445 * 180.02562 * 22 17 16 24 24 C 1.38267 * 120.06746 * 0.02562 * 22 17 16 25 25 C 1.39099 * 119.96843 * 0.29227 * 13 12 11 26 26 F 1.35098 * 120.22617 * 179.73145 * 25 13 12 27 27 H 0.96997 * 120.00014 * 359.97438 * 1 2 3 28 28 H 1.08004 * 119.99274 * 0.02562 * 10 9 7 29 29 H 1.08001 * 119.77163 * 180.02562 * 11 10 9 30 30 H 1.08002 * 119.79441 * 179.97438 * 12 11 10 31 31 H 1.08002 * 120.03635 * 359.97438 * 15 14 13 32 32 H 1.07999 * 119.92772 * 179.71814 * 16 15 14 33 33 H 1.08005 * 120.07656 * 179.97438 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6176 0.0000 4 1 3.0962 1.6964 -1.2124 5 1 1.2775 2.7464 -0.0006 6 1 3.0962 1.6965 1.2125 7 6 2.0081 -1.2118 0.0005 8 1 3.0493 -1.2342 0.2864 9 6 1.3523 -2.4066 -0.3731 10 6 0.2230 -2.3619 -1.2125 11 6 -0.4130 -3.5277 -1.5736 12 6 0.0495 -4.7504 -1.1162 13 6 1.1674 -4.8164 -0.2835 14 6 1.6556 -6.1314 0.2010 15 6 3.0038 -6.4638 0.0813 16 6 3.4526 -7.6904 0.5271 17 6 2.5685 -8.5880 1.0979 18 6 3.0648 -9.9260 1.5822 19 9 4.4405 -10.0256 1.3483 20 9 2.8149 -10.0477 2.9533 21 9 2.3996 -10.9467 0.8946 22 6 1.2285 -8.2611 1.2260 23 9 0.3697 -9.1415 1.7848 24 6 0.7692 -7.0347 0.7824 25 6 1.8205 -3.6486 0.0967 26 9 2.9000 -3.7061 0.9070 27 1 -0.4850 0.8400 0.0004 28 1 -0.1444 -1.4125 -1.5733 29 1 -1.2788 -3.4888 -2.2181 30 1 -0.4581 -5.6586 -1.4059 31 1 3.6955 -5.7646 -0.3648 32 1 4.4964 -7.9499 0.4302 33 1 -0.2757 -6.7799 0.8818 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241914959.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:08 Heat of formation + Delta-G solvation = -206.844697 kcal Electronic energy + Delta-G solvation = -26821.092942 eV Core-core repulsion = 22031.959994 eV Total energy + Delta-G solvation = -4789.132948 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.25716 -49.04998 -47.71321 -47.65718 -47.49382 -39.26435 -37.33609 -34.21452 -32.50024 -30.71773 -29.90369 -29.00854 -25.72439 -25.48119 -23.06755 -22.52743 -20.98393 -20.60454 -18.65557 -18.55344 -18.47439 -17.78864 -16.71499 -16.21380 -16.14411 -15.75505 -15.41650 -14.98170 -14.70879 -14.62682 -14.52557 -14.27823 -14.20697 -14.11190 -13.87318 -13.83480 -13.61808 -13.21917 -13.02977 -12.72158 -12.45458 -12.08752 -11.89223 -11.75547 -11.54093 -11.26718 -11.12456 -10.99097 -10.64938 -10.06676 -9.85944 -9.43611 -9.23238 -8.85421 -7.73302 -7.51626 -7.01716 -4.62526 0.69746 1.13844 2.40579 2.48035 2.57302 2.95158 2.97211 3.02521 3.45832 3.60872 3.76075 3.86039 4.08172 4.31523 4.35231 4.70768 4.88912 5.13992 5.22182 5.28083 5.57861 5.63528 5.78207 5.95154 6.01607 6.10562 6.32014 6.42983 6.59052 6.74708 6.85711 6.95117 7.21208 7.32210 7.65592 7.73000 7.83492 8.29024 8.51643 8.58108 9.91732 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.025171 B = 0.003008 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.112212 B = 9306.782671 C = 9898.119608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.077 3.923 3 Si 0.915 3.085 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.452 4.452 8 H 0.085 0.915 9 C 0.084 3.916 10 C -0.134 4.134 11 C -0.111 4.111 12 C -0.196 4.196 13 C -0.082 4.082 14 C 0.052 3.948 15 C -0.118 4.118 16 C -0.045 4.045 17 C -0.241 4.241 18 C 0.516 3.484 19 F -0.176 7.176 20 F -0.176 7.176 21 F -0.176 7.176 22 C 0.148 3.852 23 F -0.129 7.129 24 C -0.149 4.149 25 C -0.004 4.004 26 F -0.155 7.155 27 H 0.286 0.714 28 H 0.128 0.872 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.899 -10.752 -0.315 11.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.143 4.143 3 Si 0.738 3.262 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.480 4.480 8 H 0.103 0.897 9 C 0.081 3.919 10 C -0.154 4.154 11 C -0.129 4.129 12 C -0.215 4.215 13 C -0.083 4.083 14 C 0.052 3.948 15 C -0.136 4.136 16 C -0.063 4.063 17 C -0.243 4.243 18 C 0.461 3.539 19 F -0.157 7.157 20 F -0.157 7.157 21 F -0.158 7.158 22 C 0.129 3.871 23 F -0.108 7.108 24 C -0.168 4.168 25 C -0.024 4.024 26 F -0.134 7.134 27 H 0.097 0.903 28 H 0.146 0.854 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.161 0.839 32 H 0.163 0.837 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.706 -10.660 -0.222 11.001 hybrid contribution 0.329 0.356 0.423 0.643 sum 3.035 -10.305 0.200 10.744 Atomic orbital electron populations 1.69781 1.07689 1.30026 1.33487 1.25932 0.94799 1.01645 0.91897 0.86241 0.80137 0.79467 0.80321 1.18536 1.20089 1.18714 1.19514 0.98514 0.90858 1.39106 0.89705 1.17551 0.92758 0.90624 0.90960 1.21320 0.97697 0.97546 0.98811 1.20673 0.99231 0.92677 1.00359 1.20239 0.98534 0.97071 1.05685 1.18186 0.98731 0.88703 1.02701 1.19027 0.92341 0.92727 0.90706 1.21396 0.95553 0.96080 1.00541 1.20798 0.99371 0.92249 0.93892 1.19943 0.94641 0.96218 1.13536 1.18056 0.75103 0.85271 0.75432 1.93155 1.31689 1.96606 1.94298 1.93223 1.93921 1.96540 1.32003 1.93218 1.80549 1.62499 1.79489 1.17131 0.85657 0.88304 0.96044 1.91541 1.69320 1.67463 1.82453 1.21263 1.02017 0.91766 1.01740 1.17746 0.90714 0.93610 1.00375 1.91293 1.53339 1.97170 1.71615 0.90277 0.85396 0.88175 0.88030 0.83927 0.83687 0.83361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.63 10.96 55.55 0.61 -18.02 16 2 C 0.08 1.78 5.14 -17.34 -0.09 1.69 16 3 Si 0.91 17.41 29.59 -169.99 -5.03 12.38 16 4 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 5 H -0.28 -5.09 7.11 56.52 0.40 -4.69 16 6 H -0.26 -5.02 7.11 56.52 0.40 -4.61 16 7 C -0.45 -11.23 8.78 -37.78 -0.33 -11.56 16 8 H 0.08 2.08 7.74 -52.49 -0.41 1.67 16 9 C 0.08 2.07 5.58 -106.79 -0.60 1.48 16 10 C -0.13 -3.11 8.69 -38.85 -0.34 -3.45 16 11 C -0.11 -2.26 10.01 -39.71 -0.40 -2.66 16 12 C -0.20 -3.80 9.51 -38.99 -0.37 -4.17 16 13 C -0.08 -1.66 5.47 -104.91 -0.57 -2.24 16 14 C 0.05 0.90 5.31 -104.90 -0.56 0.34 16 15 C -0.12 -1.80 8.86 -39.25 -0.35 -2.15 16 16 C -0.05 -0.60 9.42 -39.64 -0.37 -0.97 16 17 C -0.24 -3.41 5.38 -104.49 -0.56 -3.98 16 18 C 0.52 6.91 3.02 36.01 0.11 7.02 16 19 F -0.18 -2.18 15.96 2.25 0.04 -2.14 16 20 F -0.18 -2.46 17.04 2.25 0.04 -2.42 16 21 F -0.18 -2.41 17.05 2.25 0.04 -2.37 16 22 C 0.15 2.23 7.12 -39.47 -0.28 1.95 16 23 F -0.13 -1.94 16.44 2.25 0.04 -1.90 16 24 C -0.15 -2.34 9.48 -39.18 -0.37 -2.71 16 25 C 0.00 -0.10 7.16 -38.29 -0.27 -0.37 16 26 F -0.16 -3.54 15.33 2.25 0.03 -3.51 16 27 H 0.29 6.15 8.30 -40.82 -0.34 5.81 16 28 H 0.13 3.03 6.16 -52.48 -0.32 2.71 16 29 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 30 H 0.10 1.72 8.03 -52.49 -0.42 1.29 16 31 H 0.14 2.13 7.78 -52.49 -0.41 1.72 16 32 H 0.15 1.55 7.14 -52.49 -0.37 1.18 16 33 H 0.15 2.18 8.04 -52.48 -0.42 1.75 16 LS Contribution 313.84 15.07 4.73 4.73 Total: -1.00 -24.59 313.84 -6.77 -31.37 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -1.91 Total: 3.66 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: -5.35 Total: -21.78 kcal Atomic # 7 Polarization: -18.63 SS G_CDS: 0.61 Total: -18.02 kcal Atomic # 9 Polarization: -12.53 SS G_CDS: 0.18 Total: -12.35 kcal Atomic # 14 Polarization: 17.41 SS G_CDS: -5.03 Total: 12.38 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -24.59 -6.77 -31.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241914959.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.477 kcal (2) G-P(sol) polarization free energy of solvation -24.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds