Wall clock time and date at job start Tue Mar 31 2020 15:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30844 * 1 3 3 Si 1.86793 * 120.00238 * 2 1 4 4 H 1.48495 * 109.47579 * 240.00233 * 3 2 1 5 5 H 1.48506 * 109.47088 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47652 * 119.99433 * 3 2 1 7 7 C 1.39933 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00392 * 197.79860 * 7 2 1 9 9 C 1.41322 * 119.99881 * 17.80413 * 7 2 1 10 10 C 1.40779 * 120.20583 * 24.62942 * 9 7 2 11 11 C 1.37616 * 120.01780 * 180.02562 * 10 9 7 12 12 C 1.38503 * 120.45706 * 0.02562 * 11 10 9 13 13 C 1.39551 * 120.41848 * 359.96313 * 12 11 10 14 14 C 1.48396 * 120.01683 * 180.02562 * 13 12 11 15 15 C 1.39367 * 120.10838 * 130.25300 * 14 13 12 16 16 C 1.38003 * 119.92602 * 180.32012 * 15 14 13 17 17 C 1.38313 * 120.14638 * 359.70104 * 16 15 14 18 18 C 1.50706 * 119.88674 * 179.97438 * 17 16 15 19 19 F 1.39900 * 109.47296 * 0.02562 * 18 17 16 20 20 F 1.39898 * 109.46919 * 120.02414 * 18 17 16 21 21 F 1.39901 * 109.46638 * 240.01589 * 18 17 16 22 22 C 1.38519 * 120.22127 * 359.97438 * 17 16 15 23 23 F 1.35095 * 119.96445 * 180.02562 * 22 17 16 24 24 C 1.38267 * 120.06746 * 0.02562 * 22 17 16 25 25 C 1.39099 * 119.96843 * 0.29227 * 13 12 11 26 26 F 1.35098 * 120.22617 * 179.73145 * 25 13 12 27 27 H 0.96997 * 120.00014 * 359.97438 * 1 2 3 28 28 H 1.08004 * 119.99274 * 0.02562 * 10 9 7 29 29 H 1.08001 * 119.77163 * 180.02562 * 11 10 9 30 30 H 1.08002 * 119.79441 * 179.97438 * 12 11 10 31 31 H 1.08002 * 120.03635 * 359.97438 * 15 14 13 32 32 H 1.07999 * 119.92772 * 179.71814 * 16 15 14 33 33 H 1.08005 * 120.07656 * 179.97438 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6176 0.0000 4 1 3.0962 1.6964 -1.2124 5 1 1.2775 2.7464 -0.0006 6 1 3.0962 1.6965 1.2125 7 6 2.0081 -1.2118 0.0005 8 1 3.0493 -1.2342 0.2864 9 6 1.3523 -2.4066 -0.3731 10 6 0.2230 -2.3619 -1.2125 11 6 -0.4130 -3.5277 -1.5736 12 6 0.0495 -4.7504 -1.1162 13 6 1.1674 -4.8164 -0.2835 14 6 1.6556 -6.1314 0.2010 15 6 3.0038 -6.4638 0.0813 16 6 3.4526 -7.6904 0.5271 17 6 2.5685 -8.5880 1.0979 18 6 3.0648 -9.9260 1.5822 19 9 4.4405 -10.0256 1.3483 20 9 2.8149 -10.0477 2.9533 21 9 2.3996 -10.9467 0.8946 22 6 1.2285 -8.2611 1.2260 23 9 0.3697 -9.1415 1.7848 24 6 0.7692 -7.0347 0.7824 25 6 1.8205 -3.6486 0.0967 26 9 2.9000 -3.7061 0.9070 27 1 -0.4850 0.8400 0.0004 28 1 -0.1444 -1.4125 -1.5733 29 1 -1.2788 -3.4888 -2.2181 30 1 -0.4581 -5.6586 -1.4059 31 1 3.6955 -5.7646 -0.3648 32 1 4.4964 -7.9499 0.4302 33 1 -0.2757 -6.7799 0.8818 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241914959.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:07 Heat of formation + Delta-G solvation = -214.920415 kcal Electronic energy + Delta-G solvation = -26821.443132 eV Core-core repulsion = 22031.959994 eV Total energy + Delta-G solvation = -4789.483138 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.32668 -50.22242 -49.25274 -48.75642 -48.74055 -40.54297 -38.93847 -35.86482 -33.89411 -31.92569 -31.58582 -30.49051 -27.34733 -26.84429 -24.29788 -23.84200 -22.62040 -22.11147 -19.83041 -19.62300 -19.54575 -19.31674 -18.15577 -17.86981 -17.42671 -17.09507 -16.88422 -16.38826 -16.31006 -15.92723 -15.69095 -15.59563 -15.52721 -15.16664 -15.10921 -14.89441 -14.83994 -14.63576 -14.45572 -14.09034 -13.84134 -13.66738 -13.47238 -13.18333 -12.93212 -12.79786 -12.57166 -12.48939 -12.17131 -11.74366 -11.50755 -11.12116 -10.55741 -10.04870 -9.44815 -9.15449 -8.72818 -6.44768 -0.55122 -0.04023 0.77530 0.81767 1.38337 1.47546 1.47885 1.51158 2.17974 2.20286 2.51087 2.61489 2.73290 2.94404 3.26459 3.41632 3.51221 3.69703 3.89776 3.99327 4.07234 4.40080 4.46924 4.60616 4.70933 4.76096 4.88319 4.92103 5.05806 5.20721 5.31776 5.47966 5.57134 5.65926 5.96635 5.97530 6.11395 6.51641 6.74577 6.82417 8.22698 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.025171 B = 0.003008 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.112212 B = 9306.782671 C = 9898.119608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.042 3.958 3 Si 0.981 3.019 4 H -0.258 1.258 5 H -0.263 1.263 6 H -0.264 1.264 7 C -0.493 4.493 8 H 0.073 0.927 9 C 0.056 3.944 10 C -0.156 4.156 11 C -0.108 4.108 12 C -0.187 4.187 13 C -0.074 4.074 14 C 0.028 3.972 15 C -0.119 4.119 16 C -0.031 4.031 17 C -0.237 4.237 18 C 0.520 3.480 19 F -0.167 7.167 20 F -0.179 7.179 21 F -0.176 7.176 22 C 0.144 3.856 23 F -0.129 7.129 24 C -0.146 4.146 25 C -0.032 4.032 26 F -0.161 7.161 27 H 0.294 0.706 28 H 0.115 0.885 29 H 0.130 0.870 30 H 0.135 0.865 31 H 0.143 0.857 32 H 0.176 0.824 33 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.084 -12.137 -0.576 12.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.175 4.175 3 Si 0.802 3.198 4 H -0.182 1.182 5 H -0.187 1.187 6 H -0.188 1.188 7 C -0.522 4.522 8 H 0.091 0.909 9 C 0.053 3.947 10 C -0.175 4.175 11 C -0.126 4.126 12 C -0.206 4.206 13 C -0.075 4.075 14 C 0.028 3.972 15 C -0.137 4.137 16 C -0.049 4.049 17 C -0.239 4.239 18 C 0.466 3.534 19 F -0.148 7.148 20 F -0.160 7.160 21 F -0.158 7.158 22 C 0.125 3.875 23 F -0.107 7.107 24 C -0.164 4.164 25 C -0.052 4.052 26 F -0.140 7.140 27 H 0.105 0.895 28 H 0.133 0.867 29 H 0.148 0.852 30 H 0.153 0.847 31 H 0.161 0.839 32 H 0.193 0.807 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 2.883 -12.067 -0.486 12.416 hybrid contribution 0.250 0.561 0.504 0.795 sum 3.133 -11.506 0.018 11.925 Atomic orbital electron populations 1.69808 1.08774 1.31201 1.34130 1.26664 0.95528 1.04278 0.90999 0.85255 0.78916 0.75594 0.80079 1.18230 1.18672 1.18847 1.19667 0.98399 0.92417 1.41718 0.90912 1.17897 0.93711 0.91402 0.91714 1.21306 0.98227 0.98200 0.99795 1.21014 0.99556 0.92081 0.99943 1.20672 0.97876 0.97948 1.04061 1.18437 0.98111 0.89310 1.01664 1.18921 0.93529 0.91913 0.92846 1.21459 0.94831 0.96905 1.00538 1.21040 1.00652 0.90928 0.92251 1.20129 0.94428 0.96668 1.12677 1.17902 0.75442 0.84815 0.75214 1.93177 1.30924 1.96532 1.94213 1.93222 1.93993 1.96515 1.32274 1.93223 1.80642 1.62431 1.79475 1.17140 0.86043 0.88156 0.96199 1.91545 1.69404 1.67345 1.82442 1.21251 1.02212 0.91656 1.01328 1.18005 0.91457 0.94359 1.01371 1.91257 1.53674 1.97219 1.71884 0.89536 0.86682 0.85209 0.84715 0.83938 0.80682 0.82567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.65 10.96 21.83 0.24 -39.41 16 2 C 0.04 2.00 5.14 85.25 0.44 2.44 16 3 Si 0.98 36.33 29.59 68.60 2.03 38.36 16 4 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 5 H -0.26 -9.05 7.11 99.48 0.71 -8.34 16 6 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 7 C -0.49 -25.70 8.78 23.44 0.21 -25.50 16 8 H 0.07 3.79 7.74 -2.91 -0.02 3.77 16 9 C 0.06 2.84 5.58 -21.27 -0.12 2.73 16 10 C -0.16 -7.38 8.69 22.74 0.20 -7.18 16 11 C -0.11 -4.29 10.01 22.19 0.22 -4.06 16 12 C -0.19 -6.92 9.51 22.65 0.22 -6.71 16 13 C -0.07 -2.96 5.47 -20.05 -0.11 -3.07 16 14 C 0.03 0.93 5.31 -20.05 -0.11 0.83 16 15 C -0.12 -3.46 8.86 22.49 0.20 -3.26 16 16 C -0.03 -0.74 9.42 22.23 0.21 -0.53 16 17 C -0.24 -6.07 5.38 -19.78 -0.11 -6.17 16 18 C 0.52 12.52 3.02 71.24 0.22 12.73 16 19 F -0.17 -3.61 15.96 44.97 0.72 -2.90 16 20 F -0.18 -4.59 17.04 44.97 0.77 -3.82 16 21 F -0.18 -4.36 17.05 44.97 0.77 -3.59 16 22 C 0.14 4.01 7.12 22.34 0.16 4.17 16 23 F -0.13 -3.59 16.44 44.97 0.74 -2.85 16 24 C -0.15 -4.30 9.48 22.53 0.21 -4.08 16 25 C -0.03 -1.50 7.16 23.11 0.17 -1.33 16 26 F -0.16 -7.59 15.33 44.97 0.69 -6.90 16 27 H 0.29 12.84 8.30 -92.71 -0.77 12.07 16 28 H 0.12 5.66 6.16 -2.91 -0.02 5.64 16 29 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 30 H 0.14 4.10 8.03 -2.91 -0.02 4.07 16 31 H 0.14 4.12 7.78 -2.91 -0.02 4.10 16 32 H 0.18 3.10 7.14 -2.91 -0.02 3.08 16 33 H 0.16 4.26 8.04 -2.91 -0.02 4.24 16 Total: -1.00 -53.99 313.84 9.15 -44.84 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 1.20 Total: 15.28 kcal Atomic # 6 Polarization: -41.01 SS G_CDS: 2.00 Total: -39.01 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.24 Total: -39.41 kcal Atomic # 9 Polarization: -23.74 SS G_CDS: 3.68 Total: -20.06 kcal Atomic # 14 Polarization: 36.33 SS G_CDS: 2.03 Total: 38.36 kcal Total: -53.99 9.15 -44.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241914959.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.076 kcal (2) G-P(sol) polarization free energy of solvation -53.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds