Wall clock time and date at job start Tue Mar 31 2020 15:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30788 * 1 3 3 Si 1.86802 * 119.99825 * 2 1 4 4 H 1.48495 * 109.47286 * 0.02562 * 3 2 1 5 5 H 1.48510 * 109.46976 * 119.99888 * 3 2 1 6 6 H 1.48501 * 109.47204 * 239.99841 * 3 2 1 7 7 C 1.40068 * 120.00033 * 180.27726 * 2 1 3 8 8 H 1.08003 * 120.00378 * 139.54320 * 7 2 1 9 9 C 1.40796 * 119.99883 * 319.53787 * 7 2 1 10 10 C 1.41027 * 120.34761 * 323.54447 * 9 7 2 11 11 F 1.35099 * 120.09973 * 0.02562 * 10 9 7 12 12 C 1.37750 * 119.79970 * 180.02562 * 10 9 7 13 13 C 1.38801 * 120.51734 * 0.02562 * 12 10 9 14 14 C 1.38152 * 120.71695 * 359.97438 * 13 12 10 15 15 C 1.39050 * 120.17450 * 359.76231 * 14 13 12 16 16 C 1.47897 * 120.25710 * 180.28041 * 15 14 13 17 17 C 1.39668 * 120.13404 * 310.23230 * 16 15 14 18 18 C 1.37917 * 119.89851 * 180.02562 * 17 16 15 19 19 C 1.38376 * 120.17700 * 359.97400 * 18 17 16 20 20 C 1.50697 * 119.85982 * 180.02562 * 19 18 17 21 21 F 1.39898 * 109.47700 * 0.02562 * 20 19 18 22 22 F 1.39906 * 109.47141 * 120.00391 * 20 19 18 23 23 F 1.39896 * 109.47326 * 239.99702 * 20 19 18 24 24 C 1.38589 * 120.27284 * 0.02950 * 19 18 17 25 25 F 1.35100 * 119.95293 * 180.02562 * 24 19 18 26 26 C 1.38178 * 120.09690 * 359.71030 * 24 19 18 27 27 H 0.96997 * 120.00082 * 174.17339 * 1 2 3 28 28 H 1.08006 * 119.74061 * 179.97438 * 12 10 9 29 29 H 1.07996 * 119.63953 * 179.97438 * 13 12 10 30 30 H 1.07997 * 119.90925 * 180.02562 * 14 13 12 31 31 H 1.07993 * 120.04503 * 359.97438 * 17 16 15 32 32 H 1.08000 * 119.91015 * 180.02562 * 18 17 16 33 33 H 1.08002 * 120.08874 * 180.27865 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 1.2769 2.7465 0.0006 5 1 3.0956 1.6965 1.2126 6 1 3.0956 1.6965 -1.2125 7 6 2.0082 -1.2130 -0.0059 8 1 2.8946 -1.3220 -0.6133 9 6 1.5568 -2.2903 0.7802 10 6 0.9884 -2.0571 2.0496 11 9 0.8733 -0.7955 2.5190 12 6 0.5509 -3.1195 2.8095 13 6 0.6654 -4.4192 2.3359 14 6 1.2188 -4.6722 1.0956 15 6 1.6649 -3.6213 0.3018 16 6 2.2520 -3.8895 -1.0289 17 6 3.2576 -4.8482 -1.1713 18 6 3.8020 -5.0941 -2.4144 19 6 3.3541 -4.3939 -3.5207 20 6 3.9535 -4.6687 -4.8758 21 9 4.9321 -5.6618 -4.7602 22 9 2.9509 -5.1021 -5.7500 23 9 4.5335 -3.4978 -5.3753 24 6 2.3566 -3.4410 -3.3877 25 9 1.9238 -2.7616 -4.4723 26 6 1.7995 -3.1894 -2.1485 27 1 -0.4850 -0.8357 -0.0853 28 1 0.1161 -2.9399 3.7817 29 1 0.3181 -5.2417 2.9436 30 1 1.3011 -5.6885 0.7398 31 1 3.6089 -5.3955 -0.3091 32 1 4.5793 -5.8357 -2.5248 33 1 1.0190 -2.4500 -2.0457 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241922723.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:30 Heat of formation + Delta-G solvation = -211.278105 kcal Electronic energy + Delta-G solvation = -27555.513390 eV Core-core repulsion = 22766.188195 eV Total energy + Delta-G solvation = -4789.325195 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.08608 -48.75106 -47.55310 -47.48538 -47.45072 -39.16507 -37.27467 -34.21327 -32.53965 -30.49406 -29.79456 -29.02108 -25.92063 -24.98165 -22.71872 -22.44018 -21.19582 -20.41640 -18.51062 -18.38447 -18.31149 -18.20073 -17.03476 -15.98718 -15.68181 -15.48373 -15.14236 -14.95227 -14.52030 -14.37690 -14.35975 -14.29178 -14.10834 -13.95676 -13.88401 -13.67690 -13.57890 -13.21155 -12.93091 -12.62620 -12.51873 -12.16522 -11.81867 -11.52466 -11.34519 -11.18482 -10.99711 -10.88715 -10.60057 -10.46418 -9.83157 -9.11419 -8.87238 -8.60888 -7.94483 -7.61831 -7.53295 -4.74604 0.95352 1.44299 2.29266 2.44982 2.77088 3.06022 3.13687 3.28491 3.69421 3.81841 3.85441 4.08607 4.19845 4.36257 4.53460 4.85352 5.07005 5.14504 5.37190 5.59764 5.64056 5.75765 5.85074 6.03703 6.08310 6.20603 6.32502 6.37922 6.66794 6.77886 6.97386 7.07580 7.15767 7.39308 7.43453 7.47462 7.68737 7.89065 8.31973 8.42597 9.65697 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.014364 B = 0.004639 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.910749 B = 6034.879493 C = 7356.525919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.746 5.746 2 C 0.058 3.942 3 Si 1.052 2.948 4 H -0.271 1.271 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.519 4.519 8 H 0.091 0.909 9 C 0.091 3.909 10 C -0.005 4.005 11 F -0.149 7.149 12 C -0.109 4.109 13 C -0.232 4.232 14 C -0.058 4.058 15 C -0.190 4.190 16 C 0.086 3.914 17 C -0.146 4.146 18 C -0.047 4.047 19 C -0.255 4.255 20 C 0.516 3.484 21 F -0.179 7.179 22 F -0.178 7.178 23 F -0.177 7.177 24 C 0.145 3.855 25 F -0.133 7.133 26 C -0.133 4.133 27 H 0.296 0.704 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.638 -6.982 -4.065 9.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.364 5.364 2 C -0.171 4.171 3 Si 0.874 3.126 4 H -0.195 1.195 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.543 4.543 8 H 0.109 0.891 9 C 0.088 3.912 10 C -0.025 4.025 11 F -0.128 7.128 12 C -0.128 4.128 13 C -0.251 4.251 14 C -0.076 4.076 15 C -0.191 4.191 16 C 0.086 3.914 17 C -0.164 4.164 18 C -0.065 4.065 19 C -0.257 4.257 20 C 0.462 3.538 21 F -0.161 7.161 22 F -0.160 7.160 23 F -0.158 7.158 24 C 0.125 3.875 25 F -0.111 7.111 26 C -0.152 4.152 27 H 0.109 0.891 28 H 0.123 0.877 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.153 0.847 32 H 0.156 0.844 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 4.346 -5.277 -4.087 7.965 hybrid contribution 0.142 -1.405 -0.300 1.443 sum 4.488 -6.682 -4.386 9.167 Atomic orbital electron populations 1.70501 1.08663 1.34110 1.23137 1.27042 0.95053 1.04551 0.90450 0.83815 0.76316 0.73959 0.78477 1.19540 1.19424 1.19757 1.20391 1.12477 0.96590 1.24869 0.89083 1.17419 0.91070 0.92164 0.90578 1.17831 1.11616 0.78564 0.94497 1.91353 1.94668 1.38477 1.88284 1.20692 1.00538 0.92708 0.98857 1.20055 1.12019 0.94886 0.98140 1.20657 0.96825 0.96572 0.93542 1.18211 1.14230 0.93212 0.93432 1.18758 0.90322 0.89870 0.92494 1.21345 0.97729 1.00487 0.96843 1.20659 0.98006 0.96993 0.90847 1.19835 1.05643 1.06794 0.93424 1.18106 0.75892 0.74045 0.85793 1.93133 1.64130 1.62647 1.96179 1.93207 1.60913 1.89828 1.72031 1.93214 1.85061 1.48441 1.89126 1.17203 0.94425 0.91782 0.84078 1.91524 1.88482 1.78107 1.52988 1.21404 1.02306 1.02267 0.89228 0.89119 0.87743 0.87890 0.88081 0.84711 0.84355 0.83210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -18.26 12.79 55.55 0.71 -17.55 16 2 C 0.06 1.36 3.74 -17.31 -0.06 1.29 16 3 Si 1.05 20.90 30.06 -169.99 -5.11 15.79 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 6 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 7 C -0.52 -12.23 6.47 -37.93 -0.25 -12.48 16 8 H 0.09 2.15 7.38 -52.48 -0.39 1.76 16 9 C 0.09 2.12 5.04 -106.49 -0.54 1.58 16 10 C -0.01 -0.13 6.88 -38.70 -0.27 -0.39 16 11 F -0.15 -3.68 15.08 2.25 0.03 -3.64 16 12 C -0.11 -2.24 9.99 -39.55 -0.40 -2.64 16 13 C -0.23 -4.37 10.03 -39.40 -0.40 -4.77 16 14 C -0.06 -1.08 9.49 -39.31 -0.37 -1.45 16 15 C -0.19 -3.90 5.52 -104.26 -0.58 -4.48 16 16 C 0.09 1.59 4.96 -104.91 -0.52 1.07 16 17 C -0.15 -2.26 9.51 -39.17 -0.37 -2.64 16 18 C -0.05 -0.67 9.41 -39.65 -0.37 -1.04 16 19 C -0.25 -4.07 5.39 -104.44 -0.56 -4.63 16 20 C 0.52 7.77 3.02 36.00 0.11 7.88 16 21 F -0.18 -2.44 15.96 2.25 0.04 -2.40 16 22 F -0.18 -2.74 17.04 2.25 0.04 -2.70 16 23 F -0.18 -2.80 17.04 2.25 0.04 -2.77 16 24 C 0.14 2.57 7.12 -39.47 -0.28 2.29 16 25 F -0.13 -2.41 16.44 2.25 0.04 -2.38 16 26 C -0.13 -2.53 8.21 -39.10 -0.32 -2.85 16 27 H 0.30 7.34 8.22 -40.82 -0.34 7.00 16 28 H 0.10 1.94 8.06 -52.48 -0.42 1.51 16 29 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 30 H 0.10 1.62 8.03 -52.49 -0.42 1.19 16 31 H 0.14 1.83 8.04 -52.49 -0.42 1.41 16 32 H 0.14 1.59 7.14 -52.49 -0.37 1.21 16 33 H 0.15 3.06 7.33 -52.49 -0.38 2.68 16 LS Contribution 312.76 15.07 4.71 4.71 Total: -1.00 -24.10 312.76 -6.64 -30.75 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -1.97 Total: 3.44 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: -5.17 Total: -23.24 kcal Atomic # 7 Polarization: -18.26 SS G_CDS: 0.71 Total: -17.55 kcal Atomic # 9 Polarization: -14.08 SS G_CDS: 0.18 Total: -13.90 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.11 Total: 15.79 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -24.10 -6.64 -30.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241922723.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.533 kcal (2) G-P(sol) polarization free energy of solvation -24.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds