Wall clock time and date at job start Tue Mar 31 2020 15:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30788 * 1 3 3 Si 1.86802 * 119.99825 * 2 1 4 4 H 1.48495 * 109.47286 * 0.02562 * 3 2 1 5 5 H 1.48510 * 109.46976 * 119.99888 * 3 2 1 6 6 H 1.48501 * 109.47204 * 239.99841 * 3 2 1 7 7 C 1.40068 * 120.00033 * 180.27726 * 2 1 3 8 8 H 1.08003 * 120.00378 * 139.54320 * 7 2 1 9 9 C 1.40796 * 119.99883 * 319.53787 * 7 2 1 10 10 C 1.41027 * 120.34761 * 323.54447 * 9 7 2 11 11 F 1.35099 * 120.09973 * 0.02562 * 10 9 7 12 12 C 1.37750 * 119.79970 * 180.02562 * 10 9 7 13 13 C 1.38801 * 120.51734 * 0.02562 * 12 10 9 14 14 C 1.38152 * 120.71695 * 359.97438 * 13 12 10 15 15 C 1.39050 * 120.17450 * 359.76231 * 14 13 12 16 16 C 1.47897 * 120.25710 * 180.28041 * 15 14 13 17 17 C 1.39668 * 120.13404 * 310.23230 * 16 15 14 18 18 C 1.37917 * 119.89851 * 180.02562 * 17 16 15 19 19 C 1.38376 * 120.17700 * 359.97400 * 18 17 16 20 20 C 1.50697 * 119.85982 * 180.02562 * 19 18 17 21 21 F 1.39898 * 109.47700 * 0.02562 * 20 19 18 22 22 F 1.39906 * 109.47141 * 120.00391 * 20 19 18 23 23 F 1.39896 * 109.47326 * 239.99702 * 20 19 18 24 24 C 1.38589 * 120.27284 * 0.02950 * 19 18 17 25 25 F 1.35100 * 119.95293 * 180.02562 * 24 19 18 26 26 C 1.38178 * 120.09690 * 359.71030 * 24 19 18 27 27 H 0.96997 * 120.00082 * 174.17339 * 1 2 3 28 28 H 1.08006 * 119.74061 * 179.97438 * 12 10 9 29 29 H 1.07996 * 119.63953 * 179.97438 * 13 12 10 30 30 H 1.07997 * 119.90925 * 180.02562 * 14 13 12 31 31 H 1.07993 * 120.04503 * 359.97438 * 17 16 15 32 32 H 1.08000 * 119.91015 * 180.02562 * 18 17 16 33 33 H 1.08002 * 120.08874 * 180.27865 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 1.2769 2.7465 0.0006 5 1 3.0956 1.6965 1.2126 6 1 3.0956 1.6965 -1.2125 7 6 2.0082 -1.2130 -0.0059 8 1 2.8946 -1.3220 -0.6133 9 6 1.5568 -2.2903 0.7802 10 6 0.9884 -2.0571 2.0496 11 9 0.8733 -0.7955 2.5190 12 6 0.5509 -3.1195 2.8095 13 6 0.6654 -4.4192 2.3359 14 6 1.2188 -4.6722 1.0956 15 6 1.6649 -3.6213 0.3018 16 6 2.2520 -3.8895 -1.0289 17 6 3.2576 -4.8482 -1.1713 18 6 3.8020 -5.0941 -2.4144 19 6 3.3541 -4.3939 -3.5207 20 6 3.9535 -4.6687 -4.8758 21 9 4.9321 -5.6618 -4.7602 22 9 2.9509 -5.1021 -5.7500 23 9 4.5335 -3.4978 -5.3753 24 6 2.3566 -3.4410 -3.3877 25 9 1.9238 -2.7616 -4.4723 26 6 1.7995 -3.1894 -2.1485 27 1 -0.4850 -0.8357 -0.0853 28 1 0.1161 -2.9399 3.7817 29 1 0.3181 -5.2417 2.9436 30 1 1.3011 -5.6885 0.7398 31 1 3.6089 -5.3955 -0.3091 32 1 4.5793 -5.8357 -2.5248 33 1 1.0190 -2.4500 -2.0457 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241922723.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:29 Heat of formation + Delta-G solvation = -219.430063 kcal Electronic energy + Delta-G solvation = -27555.866886 eV Core-core repulsion = 22766.188195 eV Total energy + Delta-G solvation = -4789.678691 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -51.29328 -50.15500 -49.24417 -48.72386 -48.71422 -40.58588 -38.79891 -35.89001 -33.96860 -31.87701 -31.38335 -30.51709 -27.41282 -26.49565 -24.08731 -23.83867 -22.81162 -21.91097 -20.08129 -19.61851 -19.59333 -19.49212 -18.50427 -17.42417 -17.22333 -16.94326 -16.72065 -16.55453 -16.06487 -15.81202 -15.73631 -15.64571 -15.57145 -15.19091 -15.14402 -14.87963 -14.87383 -14.73245 -14.36245 -14.24368 -13.97721 -13.65852 -13.28241 -13.02113 -12.81812 -12.65634 -12.50704 -12.46176 -12.14902 -12.01179 -11.43434 -10.75513 -10.37682 -9.95484 -9.62742 -9.26385 -9.20046 -6.48681 -0.41626 0.10962 0.71259 0.80024 1.43179 1.53037 1.53840 1.70257 2.22551 2.32911 2.53228 2.57785 2.82443 3.04991 3.25783 3.31552 3.67705 3.79124 4.02534 4.14904 4.20585 4.30248 4.44213 4.62131 4.70820 4.79440 4.94537 4.99880 5.07367 5.34998 5.43933 5.49822 5.63863 5.67719 5.85628 5.86142 6.00461 6.24412 6.62070 6.75502 7.87062 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.014364 B = 0.004639 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.910749 B = 6034.879493 C = 7356.525919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.032 3.968 3 Si 1.085 2.915 4 H -0.271 1.271 5 H -0.267 1.267 6 H -0.257 1.257 7 C -0.550 4.550 8 H 0.079 0.921 9 C 0.071 3.929 10 C -0.048 4.048 11 F -0.166 7.166 12 C -0.114 4.114 13 C -0.216 4.216 14 C -0.059 4.059 15 C -0.184 4.184 16 C 0.063 3.937 17 C -0.129 4.129 18 C -0.031 4.031 19 C -0.249 4.249 20 C 0.521 3.479 21 F -0.165 7.165 22 F -0.180 7.180 23 F -0.182 7.182 24 C 0.131 3.869 25 F -0.141 7.141 26 C -0.145 4.145 27 H 0.281 0.719 28 H 0.122 0.878 29 H 0.141 0.859 30 H 0.140 0.860 31 H 0.165 0.835 32 H 0.179 0.821 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.238 -10.050 -3.950 12.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.191 4.191 3 Si 0.904 3.096 4 H -0.195 1.195 5 H -0.192 1.192 6 H -0.181 1.181 7 C -0.576 4.576 8 H 0.097 0.903 9 C 0.067 3.933 10 C -0.068 4.068 11 F -0.146 7.146 12 C -0.133 4.133 13 C -0.234 4.234 14 C -0.077 4.077 15 C -0.185 4.185 16 C 0.063 3.937 17 C -0.147 4.147 18 C -0.049 4.049 19 C -0.251 4.251 20 C 0.467 3.533 21 F -0.146 7.146 22 F -0.162 7.162 23 F -0.164 7.164 24 C 0.111 3.889 25 F -0.119 7.119 26 C -0.164 4.164 27 H 0.093 0.907 28 H 0.140 0.860 29 H 0.159 0.841 30 H 0.158 0.842 31 H 0.182 0.818 32 H 0.196 0.804 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.952 -8.358 -3.978 11.005 hybrid contribution -0.323 -0.755 -0.339 0.889 sum 5.629 -9.113 -4.318 11.549 Atomic orbital electron populations 1.70598 1.09340 1.32952 1.26733 1.27923 0.95065 1.06886 0.89251 0.83421 0.75694 0.71453 0.79066 1.19539 1.19230 1.18083 1.20239 1.13028 0.97642 1.26668 0.90286 1.17741 0.91409 0.93480 0.90646 1.18270 1.14212 0.78725 0.95552 1.91290 1.95030 1.39748 1.88498 1.21036 0.99967 0.92889 0.99384 1.20580 1.09571 0.94989 0.98295 1.21099 0.95587 0.97848 0.93201 1.18593 1.12803 0.92752 0.94401 1.18806 0.92070 0.91541 0.91268 1.21610 0.95929 0.98782 0.98381 1.21083 0.97760 0.96557 0.89475 1.20060 1.04528 1.05823 0.94700 1.17932 0.76024 0.74174 0.85195 1.93163 1.63468 1.61933 1.96074 1.93209 1.61114 1.89809 1.72021 1.93210 1.85115 1.48923 1.89133 1.17296 0.95386 0.92700 0.83488 1.91499 1.88745 1.78497 1.53177 1.21193 1.02515 1.02238 0.90415 0.90741 0.85970 0.84081 0.84229 0.81760 0.80363 0.86141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -40.52 12.79 21.85 0.28 -40.24 16 2 C 0.03 1.58 3.74 85.29 0.32 1.90 16 3 Si 1.09 43.92 30.06 68.60 2.06 45.98 16 4 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 5 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 6 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 7 C -0.55 -27.27 6.47 23.34 0.15 -27.12 16 8 H 0.08 3.95 7.38 -2.91 -0.02 3.93 16 9 C 0.07 3.36 5.04 -21.08 -0.11 3.26 16 10 C -0.05 -2.30 6.88 22.84 0.16 -2.14 16 11 F -0.17 -8.60 15.08 44.97 0.68 -7.92 16 12 C -0.11 -4.57 9.99 22.29 0.22 -4.34 16 13 C -0.22 -7.39 10.03 22.38 0.22 -7.17 16 14 C -0.06 -2.03 9.49 22.44 0.21 -1.82 16 15 C -0.18 -7.42 5.52 -19.63 -0.11 -7.53 16 16 C 0.06 2.28 4.96 -20.05 -0.10 2.18 16 17 C -0.13 -3.52 9.51 22.54 0.21 -3.30 16 18 C -0.03 -0.76 9.41 22.23 0.21 -0.55 16 19 C -0.25 -7.33 5.39 -19.75 -0.11 -7.43 16 20 C 0.52 14.31 3.02 71.24 0.22 14.52 16 21 F -0.17 -3.84 15.96 44.97 0.72 -3.12 16 22 F -0.18 -5.16 17.04 44.97 0.77 -4.39 16 23 F -0.18 -5.44 17.04 44.97 0.77 -4.68 16 24 C 0.13 4.61 7.12 22.34 0.16 4.77 16 25 F -0.14 -5.20 16.44 44.97 0.74 -4.46 16 26 C -0.14 -5.59 8.21 22.58 0.19 -5.40 16 27 H 0.28 15.06 8.22 -92.71 -0.76 14.29 16 28 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 29 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 30 H 0.14 3.71 8.03 -2.91 -0.02 3.68 16 31 H 0.16 3.54 8.04 -2.91 -0.02 3.51 16 32 H 0.18 2.99 7.14 -2.91 -0.02 2.97 16 33 H 0.12 5.33 7.33 -2.91 -0.02 5.31 16 Total: -1.00 -55.15 312.76 9.06 -46.09 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 1.20 Total: 12.93 kcal Atomic # 6 Polarization: -42.03 SS G_CDS: 1.85 Total: -40.18 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 0.28 Total: -40.24 kcal Atomic # 9 Polarization: -28.24 SS G_CDS: 3.67 Total: -24.57 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.06 Total: 45.98 kcal Total: -55.15 9.06 -46.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241922723.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -173.345 kcal (2) G-P(sol) polarization free energy of solvation -55.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds