Wall clock time and date at job start Tue Mar 31 2020 15:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31566 * 1 3 3 Si 1.86791 * 120.00069 * 2 1 4 4 H 1.48507 * 109.47262 * 270.00259 * 3 2 1 5 5 H 1.48499 * 109.47461 * 29.99958 * 3 2 1 6 6 H 1.48496 * 109.47062 * 150.00387 * 3 2 1 7 7 C 1.38652 * 119.99561 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99499 * 179.97438 * 7 2 1 9 9 O 1.34815 * 120.00318 * 359.97438 * 7 2 1 10 10 C 1.35662 * 117.00218 * 185.05982 * 9 7 2 11 11 C 1.38762 * 120.13097 * 354.40886 * 10 9 7 12 12 C 1.38109 * 120.04470 * 180.02562 * 11 10 9 13 13 C 1.38447 * 120.32402 * 0.02562 * 12 11 10 14 14 C 1.38013 * 120.26446 * 359.97438 * 13 12 11 15 15 C 1.39272 * 119.95333 * 359.97438 * 14 13 12 16 16 C 1.48324 * 120.16301 * 180.02562 * 15 14 13 17 17 C 1.39226 * 119.97537 * 129.73091 * 16 15 14 18 18 C 1.39532 * 120.01916 * 179.77024 * 17 16 15 19 19 C 1.47759 * 120.01112 * 180.22648 * 18 17 16 20 20 O 1.21474 * 120.00269 * 0.25431 * 19 18 17 21 21 O 1.34703 * 120.00327 * 180.25060 * 19 18 17 22 22 C 1.39415 * 119.97907 * 0.48293 * 18 17 16 23 23 C 1.39424 * 119.95436 * 359.76898 * 22 18 17 24 24 C 1.47762 * 120.01132 * 179.97438 * 23 22 18 25 25 O 1.21463 * 120.00039 * 180.02562 * 24 23 22 26 26 O 1.34708 * 119.99998 * 0.02562 * 24 23 22 27 27 C 1.39228 * 119.97719 * 310.00164 * 16 15 14 28 28 H 0.97001 * 119.99688 * 359.97438 * 1 2 3 29 29 H 1.07992 * 119.97667 * 0.03997 * 11 10 9 30 30 H 1.08000 * 119.84172 * 180.26867 * 12 11 10 31 31 H 1.07996 * 119.86465 * 179.97438 * 13 12 11 32 32 H 1.08007 * 120.02660 * 180.02562 * 14 13 12 33 33 H 1.08004 * 119.98951 * 359.97438 * 17 16 15 34 34 H 0.96707 * 117.00666 * 180.02562 * 21 19 18 35 35 H 1.07998 * 120.02558 * 179.78727 * 22 18 17 36 36 H 0.96702 * 116.99803 * 180.02562 * 26 24 23 37 37 H 1.08005 * 119.98540 * 359.97438 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4472 2.6526 0.7000 6 1 3.5472 1.4400 0.6999 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3347 -2.3683 -0.0005 10 6 2.0695 -3.5038 0.1055 11 6 3.4556 -3.4404 0.0911 12 6 4.2019 -4.5975 0.1987 13 6 3.5740 -5.8254 0.3208 14 6 2.1962 -5.9036 0.3366 15 6 1.4326 -4.7438 0.2299 16 6 -0.0485 -4.8224 0.2470 17 6 -0.7786 -4.0042 1.1048 18 6 -2.1721 -4.0739 1.1181 19 6 -2.9471 -3.2020 2.0250 20 8 -2.3713 -2.4210 2.7558 21 8 -4.2921 -3.2730 2.0414 22 6 -2.8328 -4.9704 0.2794 23 6 -2.1004 -5.7930 -0.5755 24 6 -2.7994 -6.7440 -1.4645 25 8 -2.1611 -7.4609 -2.2088 26 8 -4.1444 -6.8160 -1.4496 27 6 -0.7072 -5.7182 -0.5908 28 1 -0.4850 0.8401 0.0004 29 1 3.9511 -2.4856 -0.0041 30 1 5.2805 -4.5440 0.1914 31 1 4.1648 -6.7256 0.4040 32 1 1.7104 -6.8635 0.4324 33 1 -0.2664 -3.3130 1.7577 34 1 -4.7557 -2.6826 2.6510 35 1 -3.9112 -5.0275 0.2916 36 1 -4.5566 -7.4535 -2.0486 37 1 -0.1396 -6.3553 -1.2530 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242162694.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:14 Heat of formation + Delta-G solvation = -156.075490 kcal Electronic energy + Delta-G solvation = -27013.451812 eV Core-core repulsion = 22879.464637 eV Total energy + Delta-G solvation = -4133.987174 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.087 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.54341 -39.86596 -39.32905 -37.93297 -36.42661 -36.09675 -35.83204 -32.65132 -32.25407 -31.39459 -29.33252 -28.43331 -25.51167 -24.89483 -24.07480 -22.96857 -21.58783 -20.56542 -20.28325 -18.09051 -18.06533 -17.95007 -17.46509 -16.64252 -15.95275 -15.79667 -15.64845 -15.32093 -15.07059 -14.87772 -14.52190 -14.35328 -13.77140 -13.58240 -13.49125 -13.10720 -12.89345 -12.73316 -12.37397 -11.76716 -11.73035 -11.61895 -11.57095 -11.38219 -11.30094 -10.95347 -10.92199 -10.82998 -10.58603 -10.48876 -10.30998 -9.47149 -9.08183 -8.96336 -8.88741 -8.02068 -7.27547 -6.51858 -4.10665 0.75469 0.96429 1.91985 2.26665 2.56560 2.92844 2.96621 3.09418 3.10844 3.15404 3.19485 3.89754 3.96580 4.46657 4.77088 4.98269 5.01295 5.09000 5.13122 5.36871 5.44725 5.51640 5.59549 5.70059 5.76853 5.91417 6.04292 6.16578 6.25995 6.40182 6.41339 6.58208 6.60091 6.69348 6.73867 6.86228 7.00451 7.12739 7.25911 7.30335 7.67860 7.86299 7.90362 8.12075 8.92559 9.57040 10.64088 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.009337 B = 0.005022 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2998.142820 B = 5574.135798 C = 7461.465454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.044 3.956 3 Si 0.940 3.060 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.397 4.397 8 H 0.093 0.907 9 O -0.164 6.164 10 C 0.166 3.834 11 C -0.231 4.231 12 C -0.064 4.064 13 C -0.215 4.215 14 C -0.054 4.054 15 C -0.146 4.146 16 C -0.026 4.026 17 C 0.022 3.978 18 C -0.136 4.136 19 C 0.528 3.472 20 O -0.496 6.496 21 O -0.517 6.517 22 C -0.017 4.017 23 C -0.150 4.150 24 C 0.534 3.466 25 O -0.516 6.516 26 O -0.512 6.512 27 C -0.019 4.019 28 H 0.271 0.729 29 H 0.130 0.870 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.115 0.885 33 H 0.150 0.850 34 H 0.411 0.589 35 H 0.148 0.852 36 H 0.412 0.588 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.562 -9.851 1.195 11.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.162 4.162 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.473 4.473 8 H 0.111 0.889 9 O -0.066 6.066 10 C 0.111 3.889 11 C -0.251 4.251 12 C -0.083 4.083 13 C -0.234 4.234 14 C -0.072 4.072 15 C -0.148 4.148 16 C -0.026 4.026 17 C 0.004 3.996 18 C -0.137 4.137 19 C 0.371 3.629 20 O -0.384 6.384 21 O -0.329 6.329 22 C -0.035 4.035 23 C -0.151 4.151 24 C 0.379 3.621 25 O -0.406 6.406 26 O -0.323 6.323 27 C -0.038 4.038 28 H 0.081 0.919 29 H 0.148 0.852 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.133 0.867 33 H 0.168 0.832 34 H 0.269 0.731 35 H 0.166 0.834 36 H 0.270 0.730 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.295 -9.556 1.175 10.988 hybrid contribution -0.012 0.948 -0.117 0.955 sum -5.306 -8.608 1.059 10.167 Atomic orbital electron populations 1.70035 1.05865 1.27869 1.44401 1.25283 0.95838 0.98806 0.96260 0.85725 0.78999 0.80104 0.78710 1.19875 1.20208 1.19129 1.21327 0.91859 0.80581 1.53496 0.88927 1.83948 1.34282 1.11368 1.76983 1.19279 0.90175 0.87308 0.92158 1.21125 0.93409 0.99246 1.11275 1.20861 0.98663 0.92344 0.96389 1.20527 0.94070 0.97118 1.11704 1.20714 0.93575 0.95810 0.97134 1.17616 0.89918 0.91612 1.15614 1.18419 0.92971 0.95674 0.95576 1.21748 0.91352 0.92857 0.93636 1.18832 0.93136 1.00548 1.01178 1.20729 0.80273 0.80953 0.80926 1.90949 1.70978 1.36377 1.40053 1.84531 1.20852 1.63701 1.63806 1.21617 1.00659 0.90618 0.90642 1.18736 0.93301 1.01301 1.01782 1.20808 0.80104 0.80786 0.80368 1.90878 1.67438 1.42601 1.39704 1.84576 1.21949 1.61986 1.63831 1.21561 0.91914 0.95411 0.94869 0.91891 0.85200 0.87284 0.87266 0.86686 0.83216 0.73056 0.83400 0.72967 0.84014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.09 13.67 55.48 0.76 -23.33 16 2 C 0.04 1.17 5.49 -17.51 -0.10 1.08 16 3 Si 0.94 20.11 29.55 -169.99 -5.02 15.09 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.40 -10.57 9.49 30.89 0.29 -10.28 16 8 H 0.09 2.29 5.21 -52.49 -0.27 2.01 16 9 O -0.16 -4.35 8.12 0.36 0.00 -4.35 16 10 C 0.17 3.79 6.55 -38.75 -0.25 3.53 16 11 C -0.23 -4.76 9.16 -39.43 -0.36 -5.12 16 12 C -0.06 -1.11 10.03 -39.55 -0.40 -1.51 16 13 C -0.22 -3.51 10.03 -39.59 -0.40 -3.91 16 14 C -0.05 -0.92 9.49 -39.28 -0.37 -1.29 16 15 C -0.15 -2.91 5.48 -104.72 -0.57 -3.49 16 16 C -0.03 -0.50 5.27 -105.01 -0.55 -1.05 16 17 C 0.02 0.44 8.32 -38.73 -0.32 0.12 16 18 C -0.14 -2.38 5.86 -105.09 -0.62 -3.00 16 19 C 0.53 9.09 8.27 34.62 0.29 9.37 16 20 O -0.50 -10.35 17.12 -19.25 -0.33 -10.68 16 21 O -0.52 -6.51 12.66 -40.50 -0.51 -7.02 16 22 C -0.02 -0.25 9.17 -38.70 -0.36 -0.61 16 23 C -0.15 -2.30 5.86 -105.08 -0.62 -2.92 16 24 C 0.53 7.41 8.27 34.62 0.29 7.70 16 25 O -0.52 -8.34 17.12 -19.24 -0.33 -8.67 16 26 O -0.51 -5.21 12.66 -40.51 -0.51 -5.72 16 27 C -0.02 -0.32 9.04 -38.73 -0.35 -0.67 16 28 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.13 2.67 5.64 -52.49 -0.30 2.37 16 30 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 31 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.12 1.65 8.04 -52.48 -0.42 1.23 16 33 H 0.15 3.38 7.27 -52.48 -0.38 2.99 16 34 H 0.41 3.26 9.11 45.56 0.42 3.67 16 35 H 0.15 1.89 7.13 -52.49 -0.37 1.52 16 36 H 0.41 2.16 9.11 45.56 0.42 2.57 16 37 H 0.14 2.24 7.61 -52.48 -0.40 1.84 16 LS Contribution 341.57 15.07 5.15 5.15 Total: -1.00 -33.72 341.57 -6.49 -40.21 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -1.30 Total: 11.37 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -4.40 Total: -12.04 kcal Atomic # 7 Polarization: -24.09 SS G_CDS: 0.76 Total: -23.33 kcal Atomic # 8 Polarization: -34.76 SS G_CDS: -1.68 Total: -36.44 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.72 -6.49 -40.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242162694.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.866 kcal (2) G-P(sol) polarization free energy of solvation -33.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds