Wall clock time and date at job start Tue Mar 31 2020 15:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31566 * 1 3 3 Si 1.86791 * 120.00069 * 2 1 4 4 H 1.48507 * 109.47262 * 270.00259 * 3 2 1 5 5 H 1.48499 * 109.47461 * 29.99958 * 3 2 1 6 6 H 1.48496 * 109.47062 * 150.00387 * 3 2 1 7 7 C 1.38652 * 119.99561 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99499 * 179.97438 * 7 2 1 9 9 O 1.34815 * 120.00318 * 359.97438 * 7 2 1 10 10 C 1.35662 * 117.00218 * 185.05982 * 9 7 2 11 11 C 1.38762 * 120.13097 * 354.40886 * 10 9 7 12 12 C 1.38109 * 120.04470 * 180.02562 * 11 10 9 13 13 C 1.38447 * 120.32402 * 0.02562 * 12 11 10 14 14 C 1.38013 * 120.26446 * 359.97438 * 13 12 11 15 15 C 1.39272 * 119.95333 * 359.97438 * 14 13 12 16 16 C 1.48324 * 120.16301 * 180.02562 * 15 14 13 17 17 C 1.39226 * 119.97537 * 129.73091 * 16 15 14 18 18 C 1.39532 * 120.01916 * 179.77024 * 17 16 15 19 19 C 1.47759 * 120.01112 * 180.22648 * 18 17 16 20 20 O 1.21474 * 120.00269 * 0.25431 * 19 18 17 21 21 O 1.34703 * 120.00327 * 180.25060 * 19 18 17 22 22 C 1.39415 * 119.97907 * 0.48293 * 18 17 16 23 23 C 1.39424 * 119.95436 * 359.76898 * 22 18 17 24 24 C 1.47762 * 120.01132 * 179.97438 * 23 22 18 25 25 O 1.21463 * 120.00039 * 180.02562 * 24 23 22 26 26 O 1.34708 * 119.99998 * 0.02562 * 24 23 22 27 27 C 1.39228 * 119.97719 * 310.00164 * 16 15 14 28 28 H 0.97001 * 119.99688 * 359.97438 * 1 2 3 29 29 H 1.07992 * 119.97667 * 0.03997 * 11 10 9 30 30 H 1.08000 * 119.84172 * 180.26867 * 12 11 10 31 31 H 1.07996 * 119.86465 * 179.97438 * 13 12 11 32 32 H 1.08007 * 120.02660 * 180.02562 * 14 13 12 33 33 H 1.08004 * 119.98951 * 359.97438 * 17 16 15 34 34 H 0.96707 * 117.00666 * 180.02562 * 21 19 18 35 35 H 1.07998 * 120.02558 * 179.78727 * 22 18 17 36 36 H 0.96702 * 116.99803 * 180.02562 * 26 24 23 37 37 H 1.08005 * 119.98540 * 359.97438 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4472 2.6526 0.7000 6 1 3.5472 1.4400 0.6999 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3347 -2.3683 -0.0005 10 6 2.0695 -3.5038 0.1055 11 6 3.4556 -3.4404 0.0911 12 6 4.2019 -4.5975 0.1987 13 6 3.5740 -5.8254 0.3208 14 6 2.1962 -5.9036 0.3366 15 6 1.4326 -4.7438 0.2299 16 6 -0.0485 -4.8224 0.2470 17 6 -0.7786 -4.0042 1.1048 18 6 -2.1721 -4.0739 1.1181 19 6 -2.9471 -3.2020 2.0250 20 8 -2.3713 -2.4210 2.7558 21 8 -4.2921 -3.2730 2.0414 22 6 -2.8328 -4.9704 0.2794 23 6 -2.1004 -5.7930 -0.5755 24 6 -2.7994 -6.7440 -1.4645 25 8 -2.1611 -7.4609 -2.2088 26 8 -4.1444 -6.8160 -1.4496 27 6 -0.7072 -5.7182 -0.5908 28 1 -0.4850 0.8401 0.0004 29 1 3.9511 -2.4856 -0.0041 30 1 5.2805 -4.5440 0.1914 31 1 4.1648 -6.7256 0.4040 32 1 1.7104 -6.8635 0.4324 33 1 -0.2664 -3.3130 1.7577 34 1 -4.7557 -2.6826 2.6510 35 1 -3.9112 -5.0275 0.2916 36 1 -4.5566 -7.4535 -2.0486 37 1 -0.1396 -6.3553 -1.2530 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242162694.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:13 Heat of formation + Delta-G solvation = -179.180461 kcal Electronic energy + Delta-G solvation = -27014.453718 eV Core-core repulsion = 22879.464637 eV Total energy + Delta-G solvation = -4134.989081 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.087 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.81358 -41.07621 -40.86156 -39.31825 -38.01833 -37.12257 -37.09046 -34.33806 -33.87491 -32.74163 -30.82749 -29.94161 -27.36614 -26.25208 -25.33033 -24.35683 -23.15165 -21.94023 -21.52740 -19.82004 -19.35972 -19.22040 -18.67345 -18.23474 -17.17164 -17.16144 -16.80695 -16.57535 -16.54593 -16.47254 -16.06623 -15.93706 -15.30521 -15.20176 -14.73808 -14.44446 -14.35227 -14.16851 -13.74461 -13.54558 -13.09376 -13.04292 -12.90339 -12.63386 -12.58055 -12.51525 -12.41731 -12.28443 -12.14402 -11.89225 -11.66118 -11.19568 -10.80091 -10.45137 -10.33335 -9.48030 -8.89199 -8.45108 -6.11644 -0.60162 -0.35040 0.48779 0.74301 1.23938 1.33609 1.42518 1.49896 1.66514 1.89071 2.01289 2.15958 2.60790 2.86386 3.18554 3.41267 3.50786 3.75826 3.84583 4.02509 4.06935 4.14943 4.28568 4.32860 4.47109 4.54881 4.69069 4.74210 4.90819 5.00176 5.11120 5.12059 5.25169 5.30889 5.45959 5.52622 5.54414 5.65867 5.70496 5.75941 6.01161 6.21293 6.93013 6.96745 6.99196 7.77293 8.75343 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.009337 B = 0.005022 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2998.142820 B = 5574.135798 C = 7461.465454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.016 4.016 3 Si 1.011 2.989 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.254 1.254 7 C -0.414 4.414 8 H 0.101 0.899 9 O -0.211 6.211 10 C 0.127 3.873 11 C -0.248 4.248 12 C -0.063 4.063 13 C -0.191 4.191 14 C -0.055 4.055 15 C -0.152 4.152 16 C -0.043 4.043 17 C 0.000 4.000 18 C -0.149 4.149 19 C 0.534 3.466 20 O -0.545 6.545 21 O -0.494 6.494 22 C 0.005 3.995 23 C -0.148 4.148 24 C 0.548 3.452 25 O -0.539 6.539 26 O -0.497 6.497 27 C -0.012 4.012 28 H 0.269 0.731 29 H 0.120 0.880 30 H 0.146 0.854 31 H 0.154 0.846 32 H 0.150 0.850 33 H 0.107 0.893 34 H 0.434 0.566 35 H 0.180 0.820 36 H 0.437 0.563 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.540 -12.753 0.497 13.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.215 4.215 3 Si 0.831 3.169 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.177 1.177 7 C -0.491 4.491 8 H 0.118 0.882 9 O -0.116 6.116 10 C 0.075 3.925 11 C -0.267 4.267 12 C -0.081 4.081 13 C -0.209 4.209 14 C -0.073 4.073 15 C -0.153 4.153 16 C -0.044 4.044 17 C -0.018 4.018 18 C -0.150 4.150 19 C 0.380 3.620 20 O -0.436 6.436 21 O -0.308 6.308 22 C -0.013 4.013 23 C -0.149 4.149 24 C 0.393 3.607 25 O -0.431 6.431 26 O -0.311 6.311 27 C -0.030 4.030 28 H 0.078 0.922 29 H 0.138 0.862 30 H 0.163 0.837 31 H 0.172 0.828 32 H 0.167 0.833 33 H 0.125 0.875 34 H 0.296 0.704 35 H 0.197 0.803 36 H 0.300 0.700 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.293 -12.528 0.472 13.609 hybrid contribution -0.047 1.450 0.112 1.455 sum -5.339 -11.079 0.585 12.312 Atomic orbital electron populations 1.70195 1.07732 1.28382 1.47936 1.26435 0.96732 1.02374 0.95960 0.84689 0.77906 0.75188 0.79122 1.18850 1.20096 1.17743 1.21753 0.92432 0.81461 1.53406 0.88219 1.83940 1.35318 1.12088 1.80243 1.19902 0.91459 0.87504 0.93608 1.21274 0.92899 1.00444 1.12130 1.21278 1.00417 0.91472 0.94946 1.21122 0.94039 0.98227 1.07538 1.21179 0.94162 0.96064 0.95875 1.18048 0.91023 0.91640 1.14581 1.18445 0.92774 0.96663 0.96474 1.21477 0.92700 0.93196 0.94454 1.18931 0.92384 1.01516 1.02146 1.20721 0.81444 0.79942 0.79940 1.90935 1.72234 1.38383 1.42055 1.84461 1.18293 1.63935 1.64135 1.21843 1.01883 0.88750 0.88793 1.18929 0.93001 1.01323 1.01663 1.20330 0.81119 0.79825 0.79430 1.90884 1.68314 1.43374 1.40497 1.84505 1.19649 1.62646 1.64317 1.21626 0.92838 0.94554 0.94019 0.92231 0.86230 0.83655 0.82792 0.83279 0.87531 0.70391 0.80312 0.69982 0.82816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.34 13.67 21.61 0.30 -55.04 16 2 C -0.02 -0.90 5.49 84.83 0.47 -0.44 16 3 Si 1.01 43.30 29.55 68.60 2.03 45.32 16 4 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 5 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 6 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 7 C -0.41 -23.68 9.49 67.92 0.64 -23.04 16 8 H 0.10 5.25 5.21 -2.91 -0.02 5.24 16 9 O -0.21 -12.13 8.12 -21.61 -0.18 -12.30 16 10 C 0.13 6.09 6.55 22.81 0.15 6.24 16 11 C -0.25 -10.45 9.16 22.36 0.20 -10.24 16 12 C -0.06 -2.04 10.03 22.29 0.22 -1.82 16 13 C -0.19 -5.48 10.03 22.27 0.22 -5.26 16 14 C -0.06 -1.74 9.49 22.47 0.21 -1.53 16 15 C -0.15 -6.16 5.48 -19.93 -0.11 -6.27 16 16 C -0.04 -1.70 5.27 -20.12 -0.11 -1.81 16 17 C 0.00 0.02 8.32 22.82 0.19 0.21 16 18 C -0.15 -5.36 5.86 -20.16 -0.12 -5.48 16 19 C 0.53 18.96 8.27 70.34 0.58 19.54 16 20 O -0.54 -24.34 17.12 19.92 0.34 -23.99 16 21 O -0.49 -11.78 12.66 -56.12 -0.71 -12.49 16 22 C 0.01 0.15 9.17 22.84 0.21 0.36 16 23 C -0.15 -4.26 5.86 -20.16 -0.12 -4.37 16 24 C 0.55 13.46 8.27 70.34 0.58 14.04 16 25 O -0.54 -15.85 17.12 19.96 0.34 -15.51 16 26 O -0.50 -8.01 12.66 -56.17 -0.71 -8.72 16 27 C -0.01 -0.40 9.04 22.82 0.21 -0.19 16 28 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 29 H 0.12 5.15 5.64 -2.91 -0.02 5.13 16 30 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 31 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 32 H 0.15 3.70 8.04 -2.91 -0.02 3.68 16 33 H 0.11 5.43 7.27 -2.91 -0.02 5.41 16 34 H 0.43 6.21 9.11 -74.05 -0.67 5.53 16 35 H 0.18 3.94 7.13 -2.91 -0.02 3.91 16 36 H 0.44 2.59 9.11 -74.06 -0.67 1.91 16 37 H 0.15 4.58 7.61 -2.91 -0.02 4.56 16 Total: -1.00 -81.10 341.57 4.69 -76.42 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: -0.17 Total: 26.37 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: 3.44 Total: -20.05 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: 0.30 Total: -55.04 kcal Atomic # 8 Polarization: -72.10 SS G_CDS: -0.91 Total: -73.02 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -81.10 4.69 -76.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242162694.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.762 kcal (2) G-P(sol) polarization free energy of solvation -81.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds