Wall clock time and date at job start Tue Mar 31 2020 15:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30812 * 1 3 3 Si 1.86807 * 119.99627 * 2 1 4 4 H 1.48506 * 109.46812 * 275.41288 * 3 2 1 5 5 H 1.48495 * 109.47194 * 35.41702 * 3 2 1 6 6 H 1.48507 * 109.46720 * 155.41571 * 3 2 1 7 7 C 1.39985 * 120.00385 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99510 * 341.72366 * 7 2 1 9 9 C 1.41011 * 120.00248 * 161.71646 * 7 2 1 10 10 C 1.40978 * 120.10152 * 150.11282 * 9 7 2 11 11 C 1.36220 * 119.93058 * 179.97438 * 10 9 7 12 12 C 1.39968 * 120.13832 * 359.97438 * 11 10 9 13 13 C 1.47908 * 119.89530 * 179.97438 * 12 11 10 14 14 C 1.39874 * 120.16168 * 90.00098 * 13 12 11 15 15 F 1.35097 * 120.10403 * 359.97438 * 14 13 12 16 16 C 1.38174 * 119.79256 * 179.97438 * 14 13 12 17 17 C 1.38348 * 120.12179 * 0.02562 * 16 14 13 18 18 C 1.38398 * 120.32416 * 0.25237 * 17 16 14 19 19 C 1.37943 * 120.20746 * 359.49123 * 18 17 16 20 20 C 1.50698 * 120.06544 * 180.23184 * 19 18 17 21 21 F 1.39902 * 109.46893 * 0.27384 * 20 19 18 22 22 F 1.39901 * 109.47099 * 120.27693 * 20 19 18 23 23 F 1.39896 * 109.46968 * 240.27576 * 20 19 18 24 24 C 1.40171 * 120.20547 * 0.25356 * 12 11 10 25 25 F 1.35094 * 119.96598 * 179.72168 * 24 12 11 26 26 C 1.36472 * 120.06727 * 359.48667 * 24 12 11 27 27 H 0.96997 * 120.00108 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.03921 * 0.02562 * 10 9 7 29 29 H 1.07995 * 119.93285 * 179.97438 * 11 10 9 30 30 H 1.08006 * 119.94238 * 179.97438 * 16 14 13 31 31 H 1.07996 * 119.83474 * 179.97438 * 17 16 14 32 32 H 1.08004 * 119.89913 * 179.74429 * 18 17 16 33 33 H 1.07997 * 120.07029 * 180.24973 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6179 0.0000 4 1 2.3751 2.1125 -1.3939 5 1 1.5014 2.6170 0.8113 6 1 3.5922 1.4099 0.5825 7 6 2.0081 -1.2123 0.0005 8 1 1.5090 -2.1238 0.2943 9 6 3.3649 -1.2432 -0.3825 10 6 4.2334 -2.2072 0.1687 11 6 5.5433 -2.2343 -0.2042 12 6 6.0285 -1.3074 -1.1340 13 6 7.4519 -1.3413 -1.5347 14 6 7.8567 -2.1182 -2.6251 15 9 6.9486 -2.8411 -3.3164 16 6 9.1883 -2.1438 -2.9932 17 6 10.1186 -1.4040 -2.2852 18 6 9.7245 -0.6382 -1.2019 19 6 8.3978 -0.5985 -0.8260 20 6 7.9714 0.2406 0.3508 21 9 9.0881 0.8864 0.8921 22 9 7.0392 1.1950 -0.0703 23 9 7.3909 -0.5808 1.3232 24 6 5.1711 -0.3435 -1.6822 25 9 5.6460 0.5524 -2.5750 26 6 3.8562 -0.3120 -1.3185 27 1 -0.4850 0.8400 -0.0004 28 1 3.8605 -2.9240 0.8854 29 1 6.2087 -2.9724 0.2184 30 1 9.5036 -2.7432 -3.8345 31 1 11.1583 -1.4278 -2.5766 32 1 10.4572 -0.0666 -0.6516 33 1 3.1946 0.4281 -1.7439 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242302889.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:07 Heat of formation + Delta-G solvation = -198.192251 kcal Electronic energy + Delta-G solvation = -28549.975367 eV Core-core repulsion = 23761.217617 eV Total energy + Delta-G solvation = -4788.757750 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.82454 -48.66317 -48.00715 -47.39092 -47.17854 -39.20292 -37.59868 -34.05604 -32.45367 -31.33308 -29.74699 -29.25367 -26.28544 -25.18795 -22.61776 -22.01490 -21.75362 -20.49492 -18.45266 -18.18427 -18.10608 -17.88272 -16.66723 -16.20012 -16.04765 -15.92693 -15.49427 -14.99963 -14.87752 -14.64146 -14.49399 -14.14165 -14.12097 -13.68929 -13.41156 -13.38368 -13.37778 -13.19044 -13.09061 -12.66846 -12.45963 -12.41104 -12.05963 -11.94193 -11.73342 -11.13708 -10.97734 -10.88179 -10.41704 -10.16997 -9.93190 -9.35057 -9.20837 -8.63439 -7.89380 -7.70802 -7.22203 -4.77807 0.82529 1.08892 2.16252 2.49859 2.89969 3.01990 3.10538 3.22900 3.32168 3.84151 3.92942 4.16165 4.17279 4.41239 4.73149 4.79434 4.88392 4.96801 5.15655 5.18013 5.31495 5.53798 5.84330 5.90711 6.00442 6.07669 6.12989 6.33002 6.43188 6.53277 6.72730 6.84909 7.18307 7.29045 7.39801 7.56210 7.86864 8.07840 8.37357 8.51531 9.77272 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.016386 B = 0.005516 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.325579 B = 5074.692763 C = 5791.742800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.085 3.915 3 Si 0.906 3.094 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.238 1.238 7 C -0.422 4.422 8 H 0.100 0.900 9 C 0.119 3.881 10 C -0.216 4.216 11 C -0.019 4.019 12 C -0.277 4.277 13 C 0.028 3.972 14 C 0.103 3.897 15 F -0.124 7.124 16 C -0.128 4.128 17 C -0.106 4.106 18 C -0.090 4.090 19 C -0.154 4.154 20 C 0.513 3.487 21 F -0.186 7.186 22 F -0.167 7.167 23 F -0.167 7.167 24 C 0.177 3.823 25 F -0.156 7.156 26 C -0.283 4.283 27 H 0.291 0.709 28 H 0.110 0.890 29 H 0.103 0.897 30 H 0.140 0.860 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.190 -0.682 -1.773 16.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.137 4.137 3 Si 0.732 3.268 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.161 1.161 7 C -0.449 4.449 8 H 0.118 0.882 9 C 0.116 3.884 10 C -0.235 4.235 11 C -0.038 4.038 12 C -0.279 4.279 13 C 0.027 3.973 14 C 0.084 3.916 15 F -0.103 7.103 16 C -0.147 4.147 17 C -0.124 4.124 18 C -0.108 4.108 19 C -0.155 4.155 20 C 0.459 3.541 21 F -0.167 7.167 22 F -0.148 7.148 23 F -0.148 7.148 24 C 0.158 3.842 25 F -0.135 7.135 26 C -0.303 4.303 27 H 0.102 0.898 28 H 0.128 0.872 29 H 0.121 0.879 30 H 0.158 0.842 31 H 0.157 0.843 32 H 0.158 0.842 33 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 15.836 -0.567 -1.773 15.945 hybrid contribution -0.016 0.923 -0.177 0.940 sum 15.820 0.355 -1.951 15.944 Atomic orbital electron populations 1.69670 1.08252 1.31063 1.31724 1.26297 0.94794 1.02192 0.90462 0.86348 0.81709 0.79285 0.79498 1.19143 1.21171 1.16121 1.19617 0.92951 0.96389 1.35930 0.88242 1.17538 0.92974 0.89768 0.88156 1.20692 0.92793 1.04655 1.05370 1.20113 0.95333 0.94825 0.93489 1.17642 0.90148 1.07018 1.13115 1.18486 0.93906 0.92852 0.92095 1.17827 0.86595 0.94620 0.92562 1.91532 1.66509 1.74911 1.77323 1.21275 0.91287 1.00872 1.01286 1.20913 0.99706 0.96728 0.95093 1.20956 0.94089 0.98618 0.97122 1.20127 0.95099 1.02170 0.98112 1.18043 0.74729 0.78563 0.82779 1.93121 1.53076 1.82996 1.87538 1.93265 1.66290 1.65424 1.89852 1.93239 1.84696 1.72003 1.64843 1.17065 0.91944 0.86990 0.88176 1.91373 1.89271 1.66568 1.66314 1.20631 0.93834 1.08251 1.07557 0.89797 0.87184 0.87853 0.84211 0.84302 0.84221 0.86843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.83 13.93 55.55 0.77 -19.05 16 2 C 0.09 2.14 5.40 -17.33 -0.09 2.04 16 3 Si 0.91 20.55 24.52 -169.99 -4.17 16.39 16 4 H -0.27 -5.97 6.71 56.52 0.38 -5.60 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.24 -5.65 6.87 56.52 0.39 -5.26 16 7 C -0.42 -10.82 9.55 -37.88 -0.36 -11.19 16 8 H 0.10 2.61 8.06 -52.49 -0.42 2.19 16 9 C 0.12 2.93 5.10 -106.81 -0.54 2.39 16 10 C -0.22 -4.80 9.73 -39.27 -0.38 -5.19 16 11 C -0.02 -0.40 8.70 -39.66 -0.35 -0.74 16 12 C -0.28 -5.87 3.36 -104.56 -0.35 -6.22 16 13 C 0.03 0.50 4.89 -104.82 -0.51 -0.01 16 14 C 0.10 1.67 7.29 -38.99 -0.28 1.39 16 15 F -0.12 -2.21 16.83 2.25 0.04 -2.17 16 16 C -0.13 -1.54 10.01 -39.56 -0.40 -1.93 16 17 C -0.11 -1.10 10.04 -39.48 -0.40 -1.50 16 18 C -0.09 -1.10 9.42 -39.63 -0.37 -1.47 16 19 C -0.15 -2.47 5.40 -104.23 -0.56 -3.03 16 20 C 0.51 8.82 2.89 36.00 0.10 8.92 16 21 F -0.19 -2.75 15.97 2.25 0.04 -2.72 16 22 F -0.17 -3.32 15.67 2.25 0.04 -3.28 16 23 F -0.17 -3.04 15.70 2.25 0.04 -3.01 16 24 C 0.18 4.13 6.20 -39.49 -0.24 3.89 16 25 F -0.16 -3.57 16.79 2.25 0.04 -3.53 16 26 C -0.28 -6.94 7.08 -39.22 -0.28 -7.22 16 27 H 0.29 6.63 8.30 -40.82 -0.34 6.29 16 28 H 0.11 2.25 8.06 -52.49 -0.42 1.83 16 29 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 30 H 0.14 1.27 8.06 -52.48 -0.42 0.84 16 31 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.14 1.37 7.15 -52.48 -0.38 1.00 16 33 H 0.11 2.80 4.73 -52.49 -0.25 2.55 16 LS Contribution 305.60 15.07 4.61 4.61 Total: -1.00 -27.00 305.60 -5.54 -32.54 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -1.91 Total: 0.08 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: -5.02 Total: -19.86 kcal Atomic # 7 Polarization: -19.83 SS G_CDS: 0.77 Total: -19.05 kcal Atomic # 9 Polarization: -14.88 SS G_CDS: 0.18 Total: -14.70 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.17 Total: 16.39 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.00 -5.54 -32.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242302889.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.655 kcal (2) G-P(sol) polarization free energy of solvation -27.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds