Wall clock time and date at job start Tue Mar 31 2020 15:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30812 * 1 3 3 Si 1.86807 * 119.99627 * 2 1 4 4 H 1.48506 * 109.46812 * 275.41288 * 3 2 1 5 5 H 1.48495 * 109.47194 * 35.41702 * 3 2 1 6 6 H 1.48507 * 109.46720 * 155.41571 * 3 2 1 7 7 C 1.39985 * 120.00385 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99510 * 341.72366 * 7 2 1 9 9 C 1.41011 * 120.00248 * 161.71646 * 7 2 1 10 10 C 1.40978 * 120.10152 * 150.11282 * 9 7 2 11 11 C 1.36220 * 119.93058 * 179.97438 * 10 9 7 12 12 C 1.39968 * 120.13832 * 359.97438 * 11 10 9 13 13 C 1.47908 * 119.89530 * 179.97438 * 12 11 10 14 14 C 1.39874 * 120.16168 * 90.00098 * 13 12 11 15 15 F 1.35097 * 120.10403 * 359.97438 * 14 13 12 16 16 C 1.38174 * 119.79256 * 179.97438 * 14 13 12 17 17 C 1.38348 * 120.12179 * 0.02562 * 16 14 13 18 18 C 1.38398 * 120.32416 * 0.25237 * 17 16 14 19 19 C 1.37943 * 120.20746 * 359.49123 * 18 17 16 20 20 C 1.50698 * 120.06544 * 180.23184 * 19 18 17 21 21 F 1.39902 * 109.46893 * 0.27384 * 20 19 18 22 22 F 1.39901 * 109.47099 * 120.27693 * 20 19 18 23 23 F 1.39896 * 109.46968 * 240.27576 * 20 19 18 24 24 C 1.40171 * 120.20547 * 0.25356 * 12 11 10 25 25 F 1.35094 * 119.96598 * 179.72168 * 24 12 11 26 26 C 1.36472 * 120.06727 * 359.48667 * 24 12 11 27 27 H 0.96997 * 120.00108 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.03921 * 0.02562 * 10 9 7 29 29 H 1.07995 * 119.93285 * 179.97438 * 11 10 9 30 30 H 1.08006 * 119.94238 * 179.97438 * 16 14 13 31 31 H 1.07996 * 119.83474 * 179.97438 * 17 16 14 32 32 H 1.08004 * 119.89913 * 179.74429 * 18 17 16 33 33 H 1.07997 * 120.07029 * 180.24973 * 26 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6179 0.0000 4 1 2.3751 2.1125 -1.3939 5 1 1.5014 2.6170 0.8113 6 1 3.5922 1.4099 0.5825 7 6 2.0081 -1.2123 0.0005 8 1 1.5090 -2.1238 0.2943 9 6 3.3649 -1.2432 -0.3825 10 6 4.2334 -2.2072 0.1687 11 6 5.5433 -2.2343 -0.2042 12 6 6.0285 -1.3074 -1.1340 13 6 7.4519 -1.3413 -1.5347 14 6 7.8567 -2.1182 -2.6251 15 9 6.9486 -2.8411 -3.3164 16 6 9.1883 -2.1438 -2.9932 17 6 10.1186 -1.4040 -2.2852 18 6 9.7245 -0.6382 -1.2019 19 6 8.3978 -0.5985 -0.8260 20 6 7.9714 0.2406 0.3508 21 9 9.0881 0.8864 0.8921 22 9 7.0392 1.1950 -0.0703 23 9 7.3909 -0.5808 1.3232 24 6 5.1711 -0.3435 -1.6822 25 9 5.6460 0.5524 -2.5750 26 6 3.8562 -0.3120 -1.3185 27 1 -0.4850 0.8400 -0.0004 28 1 3.8605 -2.9240 0.8854 29 1 6.2087 -2.9724 0.2184 30 1 9.5036 -2.7432 -3.8345 31 1 11.1583 -1.4278 -2.5766 32 1 10.4572 -0.0666 -0.6516 33 1 3.1946 0.4281 -1.7439 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242302889.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:06 Heat of formation + Delta-G solvation = -210.919855 kcal Electronic energy + Delta-G solvation = -28550.527277 eV Core-core repulsion = 23761.217617 eV Total energy + Delta-G solvation = -4789.309660 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.17088 -49.95444 -49.78308 -48.70108 -48.60796 -40.43108 -39.25941 -35.83705 -33.87327 -32.56752 -31.45848 -30.83285 -27.69277 -26.66333 -24.07856 -23.48992 -23.16226 -22.12959 -19.76962 -19.67815 -19.49386 -19.47641 -18.25985 -17.55123 -17.39240 -17.14598 -17.04196 -16.73204 -16.44928 -16.41037 -15.84040 -15.50758 -15.44880 -15.08910 -15.05788 -14.89079 -14.78311 -14.75623 -14.42083 -14.16751 -13.95118 -13.76225 -13.49227 -13.42418 -13.11849 -12.83887 -12.61732 -12.43598 -12.15848 -11.92117 -11.75459 -11.17721 -10.27825 -9.77674 -9.70918 -9.52065 -9.10576 -6.69976 -0.24579 0.00555 0.37067 0.64913 1.17256 1.26188 1.37311 1.62366 2.00021 2.28602 2.32475 2.66510 2.96198 3.22465 3.30517 3.38127 3.50698 3.60381 3.88584 4.03094 4.06250 4.18985 4.45154 4.52159 4.66468 4.71331 4.85450 5.00022 5.04088 5.10798 5.14651 5.35993 5.47395 5.59961 5.67130 5.74125 6.01800 6.17696 6.49880 6.62135 7.95458 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.016386 B = 0.005516 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.325579 B = 5074.692763 C = 5791.742800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.062 3.938 3 Si 0.946 3.054 4 H -0.267 1.267 5 H -0.263 1.263 6 H -0.259 1.259 7 C -0.458 4.458 8 H 0.080 0.920 9 C 0.106 3.894 10 C -0.220 4.220 11 C -0.021 4.021 12 C -0.247 4.247 13 C -0.017 4.017 14 C 0.080 3.920 15 F -0.143 7.143 16 C -0.112 4.112 17 C -0.079 4.079 18 C -0.079 4.079 19 C -0.166 4.166 20 C 0.507 3.493 21 F -0.171 7.171 22 F -0.189 7.189 23 F -0.178 7.178 24 C 0.157 3.843 25 F -0.156 7.156 26 C -0.299 4.299 27 H 0.301 0.699 28 H 0.124 0.876 29 H 0.134 0.866 30 H 0.176 0.824 31 H 0.193 0.807 32 H 0.170 0.830 33 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.800 -0.922 -2.553 20.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.157 4.157 3 Si 0.770 3.230 4 H -0.193 1.193 5 H -0.189 1.189 6 H -0.183 1.183 7 C -0.485 4.485 8 H 0.098 0.902 9 C 0.103 3.897 10 C -0.239 4.239 11 C -0.039 4.039 12 C -0.249 4.249 13 C -0.018 4.018 14 C 0.061 3.939 15 F -0.121 7.121 16 C -0.130 4.130 17 C -0.096 4.096 18 C -0.097 4.097 19 C -0.167 4.167 20 C 0.453 3.547 21 F -0.152 7.152 22 F -0.171 7.171 23 F -0.159 7.159 24 C 0.138 3.862 25 F -0.135 7.135 26 C -0.319 4.319 27 H 0.112 0.888 28 H 0.142 0.858 29 H 0.152 0.848 30 H 0.193 0.807 31 H 0.210 0.790 32 H 0.187 0.813 33 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 20.442 -0.803 -2.551 20.616 hybrid contribution -1.060 0.916 0.002 1.401 sum 19.382 0.113 -2.549 19.549 Atomic orbital electron populations 1.69665 1.08780 1.32094 1.33674 1.26675 0.95214 1.03608 0.90197 0.85753 0.80010 0.77793 0.79425 1.19255 1.18903 1.18250 1.19561 0.93868 0.96227 1.38881 0.90234 1.17676 0.93030 0.90595 0.88384 1.20960 0.93348 1.04251 1.05339 1.20490 0.95086 0.95210 0.93085 1.18058 0.92081 1.04421 1.10347 1.18411 0.92309 0.96321 0.94752 1.18126 0.88137 0.95135 0.92502 1.91488 1.67521 1.75433 1.77680 1.21730 0.89250 1.00296 1.01733 1.21551 1.01754 0.93567 0.92720 1.21403 0.92626 0.98258 0.97445 1.20087 0.96506 1.02340 0.97773 1.18342 0.74655 0.78425 0.83309 1.93140 1.51926 1.82740 1.87394 1.93222 1.67375 1.66380 1.90098 1.93211 1.85044 1.72253 1.65433 1.17290 0.92056 0.87969 0.88909 1.91358 1.89164 1.66652 1.66282 1.20690 0.94604 1.08521 1.08068 0.88833 0.85798 0.84826 0.80676 0.78987 0.81305 0.87784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.01 13.93 21.83 0.30 -42.70 16 2 C 0.06 3.27 5.40 85.27 0.46 3.73 16 3 Si 0.95 43.73 24.52 68.60 1.68 45.41 16 4 H -0.27 -12.19 6.71 99.48 0.67 -11.53 16 5 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 6 H -0.26 -12.65 6.87 99.48 0.68 -11.97 16 7 C -0.46 -24.79 9.55 23.37 0.22 -24.56 16 8 H 0.08 4.47 8.06 -2.91 -0.02 4.45 16 9 C 0.11 5.44 5.10 -21.28 -0.11 5.33 16 10 C -0.22 -9.95 9.73 22.47 0.22 -9.73 16 11 C -0.02 -0.84 8.70 22.22 0.19 -0.65 16 12 C -0.25 -10.37 3.36 -19.83 -0.07 -10.44 16 13 C -0.02 -0.58 4.89 -19.99 -0.10 -0.67 16 14 C 0.08 2.37 7.29 22.65 0.17 2.54 16 15 F -0.14 -4.86 16.83 44.97 0.76 -4.10 16 16 C -0.11 -2.07 10.01 22.28 0.22 -1.85 16 17 C -0.08 -1.09 10.04 22.33 0.22 -0.86 16 18 C -0.08 -1.52 9.42 22.24 0.21 -1.31 16 19 C -0.17 -4.85 5.40 -19.61 -0.11 -4.96 16 20 C 0.51 16.63 2.89 71.24 0.21 16.83 16 21 F -0.17 -4.62 15.97 44.97 0.72 -3.90 16 22 F -0.19 -7.48 15.67 44.97 0.70 -6.78 16 23 F -0.18 -6.34 15.70 44.97 0.71 -5.63 16 24 C 0.16 7.43 6.20 22.33 0.14 7.56 16 25 F -0.16 -7.17 16.79 44.97 0.76 -6.42 16 26 C -0.30 -15.19 7.08 22.50 0.16 -15.04 16 27 H 0.30 14.14 8.30 -92.71 -0.77 13.37 16 28 H 0.12 5.15 8.06 -2.91 -0.02 5.13 16 29 H 0.13 4.63 8.06 -2.91 -0.02 4.60 16 30 H 0.18 2.04 8.06 -2.91 -0.02 2.01 16 31 H 0.19 0.78 8.06 -2.91 -0.02 0.75 16 32 H 0.17 2.27 7.15 -2.91 -0.02 2.25 16 33 H 0.10 5.38 4.73 -2.91 -0.01 5.37 16 Total: -1.00 -62.94 305.60 8.81 -54.14 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: 1.14 Total: 4.05 kcal Atomic # 6 Polarization: -36.11 SS G_CDS: 2.04 Total: -34.07 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: 0.30 Total: -42.70 kcal Atomic # 9 Polarization: -30.48 SS G_CDS: 3.64 Total: -26.83 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.68 Total: 45.41 kcal Total: -62.94 8.81 -54.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242302889.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.783 kcal (2) G-P(sol) polarization free energy of solvation -62.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds