Wall clock time and date at job start Tue Mar 31 2020 15:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30848 * 1 3 3 Si 1.86794 * 120.00354 * 2 1 4 4 H 1.48497 * 109.47322 * 269.99958 * 3 2 1 5 5 H 1.48506 * 109.46819 * 30.00062 * 3 2 1 6 6 H 1.48500 * 109.47146 * 149.99516 * 3 2 1 7 7 C 1.39933 * 119.99440 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99668 * 162.98452 * 7 2 1 9 9 C 1.41319 * 120.00493 * 342.97898 * 7 2 1 10 10 C 1.40788 * 120.20311 * 334.59965 * 9 7 2 11 11 C 1.37617 * 120.01784 * 180.02562 * 10 9 7 12 12 C 1.38515 * 120.45470 * 359.72093 * 11 10 9 13 13 C 1.39560 * 120.41388 * 0.55769 * 12 11 10 14 14 C 1.48366 * 120.01307 * 179.71414 * 13 12 11 15 15 C 1.39579 * 120.13371 * 89.72692 * 14 13 12 16 16 F 1.35105 * 120.08228 * 359.95895 * 15 14 13 17 17 C 1.38226 * 119.82920 * 179.97438 * 15 14 13 18 18 C 1.38304 * 120.09560 * 0.02562 * 17 15 14 19 19 C 1.38315 * 120.26726 * 0.25912 * 18 17 15 20 20 C 1.38050 * 120.17444 * 359.48182 * 19 18 17 21 21 C 1.50696 * 120.05066 * 180.23395 * 20 19 18 22 22 F 1.39908 * 109.47068 * 0.27706 * 21 20 19 23 23 F 1.39900 * 109.47068 * 120.28081 * 21 20 19 24 24 F 1.39901 * 109.47168 * 240.28360 * 21 20 19 25 25 C 1.39100 * 119.97098 * 359.44601 * 13 12 11 26 26 F 1.35102 * 120.22716 * 180.29492 * 25 13 12 27 27 H 0.96997 * 120.00146 * 359.97438 * 1 2 3 28 28 H 1.08001 * 119.99066 * 359.97438 * 10 9 7 29 29 H 1.07998 * 119.77103 * 180.02562 * 11 10 9 30 30 H 1.07996 * 119.79335 * 180.27841 * 12 11 10 31 31 H 1.07997 * 119.95470 * 179.97438 * 17 15 14 32 32 H 1.08001 * 119.86805 * 179.97438 * 18 17 15 33 33 H 1.08006 * 119.91055 * 179.74178 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6176 0.0000 4 1 2.4901 2.0463 -1.4000 5 1 1.4400 2.6526 0.7001 6 1 3.5400 1.4400 0.7001 7 6 2.0080 -1.2119 -0.0005 8 1 3.0526 -1.2323 -0.2743 9 6 1.3478 -2.4091 0.3572 10 6 0.2183 -2.3715 1.1967 11 6 -0.4214 -3.5397 1.5430 12 6 0.0346 -4.7577 1.0664 13 6 1.1560 -4.8171 0.2378 14 6 1.6405 -6.1271 -0.2626 15 6 1.1542 -6.6410 -1.4657 16 9 0.2399 -5.9470 -2.1782 17 6 1.6104 -7.8619 -1.9262 18 6 2.5458 -8.5729 -1.1966 19 6 3.0259 -8.0701 -0.0009 20 6 2.5820 -6.8494 0.4668 21 6 3.1110 -6.3019 1.7673 22 9 4.0373 -7.1997 2.3089 23 9 3.7347 -5.0712 1.5358 24 9 2.0521 -6.1266 2.6646 25 6 1.8159 -3.6471 -0.1234 26 9 2.8985 -3.6980 -0.9301 27 1 -0.4850 0.8400 0.0004 28 1 -0.1458 -1.4256 1.5696 29 1 -1.2878 -3.5061 2.1869 30 1 -0.4782 -5.6675 1.3413 31 1 1.2352 -8.2616 -2.8567 32 1 2.8993 -9.5266 -1.5596 33 1 3.7532 -8.6321 0.5663 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242302948.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:11 Heat of formation + Delta-G solvation = -197.524627 kcal Electronic energy + Delta-G solvation = -28482.800782 eV Core-core repulsion = 23694.071982 eV Total energy + Delta-G solvation = -4788.728800 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.77535 -48.61984 -47.39289 -47.28126 -47.10861 -39.19116 -37.23179 -34.04688 -32.28446 -31.18114 -29.72094 -28.26593 -25.86230 -25.39809 -23.11755 -21.99137 -20.94435 -20.55398 -18.45764 -18.14770 -18.04192 -17.44512 -16.17417 -16.14605 -15.96976 -15.76101 -15.55846 -15.15543 -14.56003 -14.26298 -14.13241 -14.06443 -14.01327 -13.62596 -13.35841 -13.32074 -13.31154 -12.97218 -12.89728 -12.45425 -12.37520 -12.06647 -11.90728 -11.71245 -11.34768 -11.20145 -11.06298 -10.78074 -10.47643 -9.96269 -9.73962 -9.30523 -9.18408 -8.62352 -7.64873 -7.43428 -6.88541 -4.48015 0.84918 1.11314 2.46392 2.61820 2.93391 3.03067 3.05689 3.12690 3.35074 3.86700 3.96224 4.19917 4.41644 4.43757 4.77886 4.82337 4.86094 5.01078 5.18431 5.39058 5.51814 5.75788 5.91343 6.01622 6.09900 6.13237 6.18341 6.46034 6.68664 6.81151 6.95183 7.07843 7.32694 7.46296 7.78759 7.87173 7.97019 8.43126 8.65485 8.72691 10.05648 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.016049 B = 0.004965 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.259199 B = 5637.680616 C = 6148.498285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.076 3.924 3 Si 0.913 3.087 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.451 4.451 8 H 0.083 0.917 9 C 0.085 3.915 10 C -0.132 4.132 11 C -0.112 4.112 12 C -0.181 4.181 13 C -0.099 4.099 14 C 0.005 3.995 15 C 0.110 3.890 16 F -0.122 7.122 17 C -0.128 4.128 18 C -0.104 4.104 19 C -0.090 4.090 20 C -0.149 4.149 21 C 0.511 3.489 22 F -0.186 7.186 23 F -0.162 7.162 24 F -0.167 7.167 25 C 0.012 3.988 26 F -0.155 7.155 27 H 0.284 0.716 28 H 0.128 0.872 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.854 -12.627 0.284 12.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.142 4.142 3 Si 0.737 3.263 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.480 4.480 8 H 0.102 0.898 9 C 0.081 3.919 10 C -0.152 4.152 11 C -0.130 4.130 12 C -0.201 4.201 13 C -0.100 4.100 14 C 0.004 3.996 15 C 0.090 3.910 16 F -0.101 7.101 17 C -0.147 4.147 18 C -0.122 4.122 19 C -0.108 4.108 20 C -0.150 4.150 21 C 0.457 3.543 22 F -0.167 7.167 23 F -0.143 7.143 24 F -0.148 7.148 25 C -0.008 4.008 26 F -0.134 7.134 27 H 0.095 0.905 28 H 0.146 0.854 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.160 0.840 32 H 0.158 0.842 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.666 -12.403 0.248 12.689 hybrid contribution 0.348 0.944 -0.166 1.019 sum 3.014 -11.459 0.082 11.849 Atomic orbital electron populations 1.69801 1.07616 1.29663 1.34354 1.25907 0.94785 1.01498 0.92026 0.86224 0.80659 0.80020 0.79431 1.19303 1.19906 1.18249 1.19493 0.98131 0.90720 1.39689 0.89844 1.17524 0.92780 0.90544 0.91004 1.21281 0.97700 0.97389 0.98829 1.20622 0.99346 0.92638 1.00415 1.20108 0.98287 0.97039 1.04662 1.18060 0.99621 0.88354 1.04012 1.18689 0.93801 0.94716 0.92366 1.17637 0.91294 0.91299 0.90745 1.91556 1.63353 1.78608 1.76547 1.21277 0.98501 0.93553 1.01336 1.20908 0.96856 1.00241 0.94179 1.20958 0.99378 0.93881 0.96578 1.19964 1.01643 0.97563 0.95838 1.18059 0.75641 0.76088 0.84550 1.93122 1.67679 1.68238 1.87665 1.93302 1.82827 1.43740 1.94445 1.93247 1.56369 1.95274 1.69880 1.17702 0.89940 0.93420 0.99771 1.91288 1.53271 1.97224 1.71638 0.90526 0.85443 0.88225 0.88364 0.84032 0.84170 0.84057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.89 10.97 55.55 0.61 -19.28 16 2 C 0.08 1.90 5.15 -17.34 -0.09 1.81 16 3 Si 0.91 18.57 29.59 -169.99 -5.03 13.54 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 6 H -0.26 -5.27 7.11 56.52 0.40 -4.86 16 7 C -0.45 -12.11 8.77 -37.78 -0.33 -12.44 16 8 H 0.08 2.23 7.74 -52.48 -0.41 1.82 16 9 C 0.08 2.27 5.57 -106.79 -0.59 1.67 16 10 C -0.13 -3.34 8.68 -38.84 -0.34 -3.68 16 11 C -0.11 -2.52 10.01 -39.71 -0.40 -2.92 16 12 C -0.18 -3.98 8.79 -38.99 -0.34 -4.32 16 13 C -0.10 -2.26 3.30 -104.91 -0.35 -2.60 16 14 C 0.01 0.10 4.90 -104.84 -0.51 -0.41 16 15 C 0.11 1.91 7.28 -39.09 -0.28 1.62 16 16 F -0.12 -2.36 16.82 2.25 0.04 -2.32 16 17 C -0.13 -1.63 10.02 -39.56 -0.40 -2.03 16 18 C -0.10 -1.13 10.04 -39.53 -0.40 -1.53 16 19 C -0.09 -1.15 9.42 -39.62 -0.37 -1.52 16 20 C -0.15 -2.50 5.39 -104.30 -0.56 -3.06 16 21 C 0.51 9.03 2.89 36.00 0.10 9.13 16 22 F -0.19 -2.80 15.97 2.25 0.04 -2.77 16 23 F -0.16 -3.32 15.68 2.25 0.04 -3.29 16 24 F -0.17 -3.09 15.70 2.25 0.04 -3.06 16 25 C 0.01 0.31 6.27 -38.29 -0.24 0.07 16 26 F -0.16 -3.99 16.27 2.25 0.04 -3.96 16 27 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 28 H 0.13 3.25 6.19 -52.49 -0.32 2.93 16 29 H 0.10 1.96 8.06 -52.49 -0.42 1.53 16 30 H 0.10 1.94 8.06 -52.49 -0.42 1.51 16 31 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 33 H 0.14 1.44 7.15 -52.48 -0.38 1.06 16 LS Contribution 310.40 15.07 4.68 4.68 Total: -1.00 -28.42 310.40 -6.60 -35.01 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -1.93 Total: 1.66 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: -5.10 Total: -20.21 kcal Atomic # 7 Polarization: -19.89 SS G_CDS: 0.61 Total: -19.28 kcal Atomic # 9 Polarization: -15.57 SS G_CDS: 0.18 Total: -15.39 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.42 -6.60 -35.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242302948.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.511 kcal (2) G-P(sol) polarization free energy of solvation -28.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds