Wall clock time and date at job start Tue Mar 31 2020 15:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30848 * 1 3 3 Si 1.86794 * 120.00354 * 2 1 4 4 H 1.48497 * 109.47322 * 269.99958 * 3 2 1 5 5 H 1.48506 * 109.46819 * 30.00062 * 3 2 1 6 6 H 1.48500 * 109.47146 * 149.99516 * 3 2 1 7 7 C 1.39933 * 119.99440 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99668 * 162.98452 * 7 2 1 9 9 C 1.41319 * 120.00493 * 342.97898 * 7 2 1 10 10 C 1.40788 * 120.20311 * 334.59965 * 9 7 2 11 11 C 1.37617 * 120.01784 * 180.02562 * 10 9 7 12 12 C 1.38515 * 120.45470 * 359.72093 * 11 10 9 13 13 C 1.39560 * 120.41388 * 0.55769 * 12 11 10 14 14 C 1.48366 * 120.01307 * 179.71414 * 13 12 11 15 15 C 1.39579 * 120.13371 * 89.72692 * 14 13 12 16 16 F 1.35105 * 120.08228 * 359.95895 * 15 14 13 17 17 C 1.38226 * 119.82920 * 179.97438 * 15 14 13 18 18 C 1.38304 * 120.09560 * 0.02562 * 17 15 14 19 19 C 1.38315 * 120.26726 * 0.25912 * 18 17 15 20 20 C 1.38050 * 120.17444 * 359.48182 * 19 18 17 21 21 C 1.50696 * 120.05066 * 180.23395 * 20 19 18 22 22 F 1.39908 * 109.47068 * 0.27706 * 21 20 19 23 23 F 1.39900 * 109.47068 * 120.28081 * 21 20 19 24 24 F 1.39901 * 109.47168 * 240.28360 * 21 20 19 25 25 C 1.39100 * 119.97098 * 359.44601 * 13 12 11 26 26 F 1.35102 * 120.22716 * 180.29492 * 25 13 12 27 27 H 0.96997 * 120.00146 * 359.97438 * 1 2 3 28 28 H 1.08001 * 119.99066 * 359.97438 * 10 9 7 29 29 H 1.07998 * 119.77103 * 180.02562 * 11 10 9 30 30 H 1.07996 * 119.79335 * 180.27841 * 12 11 10 31 31 H 1.07997 * 119.95470 * 179.97438 * 17 15 14 32 32 H 1.08001 * 119.86805 * 179.97438 * 18 17 15 33 33 H 1.08006 * 119.91055 * 179.74178 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6176 0.0000 4 1 2.4901 2.0463 -1.4000 5 1 1.4400 2.6526 0.7001 6 1 3.5400 1.4400 0.7001 7 6 2.0080 -1.2119 -0.0005 8 1 3.0526 -1.2323 -0.2743 9 6 1.3478 -2.4091 0.3572 10 6 0.2183 -2.3715 1.1967 11 6 -0.4214 -3.5397 1.5430 12 6 0.0346 -4.7577 1.0664 13 6 1.1560 -4.8171 0.2378 14 6 1.6405 -6.1271 -0.2626 15 6 1.1542 -6.6410 -1.4657 16 9 0.2399 -5.9470 -2.1782 17 6 1.6104 -7.8619 -1.9262 18 6 2.5458 -8.5729 -1.1966 19 6 3.0259 -8.0701 -0.0009 20 6 2.5820 -6.8494 0.4668 21 6 3.1110 -6.3019 1.7673 22 9 4.0373 -7.1997 2.3089 23 9 3.7347 -5.0712 1.5358 24 9 2.0521 -6.1266 2.6646 25 6 1.8159 -3.6471 -0.1234 26 9 2.8985 -3.6980 -0.9301 27 1 -0.4850 0.8400 0.0004 28 1 -0.1458 -1.4256 1.5696 29 1 -1.2878 -3.5061 2.1869 30 1 -0.4782 -5.6675 1.3413 31 1 1.2352 -8.2616 -2.8567 32 1 2.8993 -9.5266 -1.5596 33 1 3.7532 -8.6321 0.5663 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242302948.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:10 Heat of formation + Delta-G solvation = -210.706688 kcal Electronic energy + Delta-G solvation = -28483.372399 eV Core-core repulsion = 23694.071982 eV Total energy + Delta-G solvation = -4789.300417 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.16772 -49.97609 -49.27988 -48.69241 -48.59723 -40.42736 -38.97332 -35.84890 -33.65849 -32.45801 -31.58538 -29.80065 -27.35982 -27.11450 -24.49574 -23.23052 -22.78009 -22.19377 -19.82452 -19.51962 -19.46640 -19.12096 -18.03693 -17.46011 -17.31779 -17.20843 -17.12010 -16.65530 -16.29506 -16.00276 -15.71003 -15.48858 -15.44200 -15.04372 -14.81318 -14.77431 -14.75156 -14.61662 -14.34137 -13.88971 -13.76358 -13.56603 -13.50104 -13.24318 -12.99774 -12.81538 -12.65030 -12.33360 -12.15400 -11.80307 -11.52839 -11.14508 -10.31728 -9.83363 -9.52965 -9.30693 -8.74795 -6.47174 -0.28256 -0.03533 0.63762 0.76854 1.34261 1.42925 1.50218 1.60755 2.16244 2.25633 2.56162 2.64468 2.94270 3.25447 3.38204 3.40459 3.50808 3.81950 3.92113 3.99992 4.16064 4.38768 4.43696 4.64858 4.78999 4.89762 4.95016 5.04300 5.08458 5.10753 5.19841 5.47399 5.60231 5.67787 5.91389 5.93455 6.07471 6.47733 6.71619 6.79596 8.22186 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.016049 B = 0.004965 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.259199 B = 5637.680616 C = 6148.498285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.040 3.960 3 Si 0.984 3.016 4 H -0.262 1.262 5 H -0.256 1.256 6 H -0.262 1.262 7 C -0.494 4.494 8 H 0.068 0.932 9 C 0.055 3.945 10 C -0.155 4.155 11 C -0.109 4.109 12 C -0.182 4.182 13 C -0.086 4.086 14 C -0.037 4.037 15 C 0.079 3.921 16 F -0.145 7.145 17 C -0.111 4.111 18 C -0.076 4.076 19 C -0.078 4.078 20 C -0.163 4.163 21 C 0.506 3.494 22 F -0.169 7.169 23 F -0.186 7.186 24 F -0.177 7.177 25 C -0.021 4.021 26 F -0.165 7.165 27 H 0.294 0.706 28 H 0.118 0.882 29 H 0.130 0.870 30 H 0.124 0.876 31 H 0.178 0.822 32 H 0.198 0.802 33 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.317 -15.425 -0.216 15.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.176 4.176 3 Si 0.804 3.196 4 H -0.186 1.186 5 H -0.180 1.180 6 H -0.186 1.186 7 C -0.522 4.522 8 H 0.086 0.914 9 C 0.052 3.948 10 C -0.174 4.174 11 C -0.128 4.128 12 C -0.201 4.201 13 C -0.087 4.087 14 C -0.038 4.038 15 C 0.060 3.940 16 F -0.123 7.123 17 C -0.129 4.129 18 C -0.093 4.093 19 C -0.096 4.096 20 C -0.165 4.165 21 C 0.452 3.548 22 F -0.150 7.150 23 F -0.168 7.168 24 F -0.158 7.158 25 C -0.041 4.041 26 F -0.144 7.144 27 H 0.105 0.895 28 H 0.135 0.865 29 H 0.148 0.852 30 H 0.142 0.858 31 H 0.196 0.804 32 H 0.215 0.785 33 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 3.114 -15.223 -0.247 15.540 hybrid contribution 0.212 1.561 -0.005 1.575 sum 3.327 -13.662 -0.252 14.064 Atomic orbital electron populations 1.69823 1.08791 1.31145 1.34355 1.26714 0.95609 1.04330 0.90942 0.85172 0.79097 0.75626 0.79678 1.18645 1.17984 1.18608 1.19628 0.97843 0.92375 1.42385 0.91378 1.17913 0.93766 0.91388 0.91741 1.21260 0.98274 0.98018 0.99885 1.20975 0.99694 0.92056 1.00028 1.20509 0.98058 0.97723 1.03795 1.18356 0.98519 0.89553 1.02241 1.18636 0.96651 0.94061 0.94497 1.18050 0.92186 0.93163 0.90601 1.91495 1.64366 1.79511 1.76958 1.21752 0.97554 0.91230 1.02347 1.21578 0.94234 1.01294 0.92212 1.21450 0.98851 0.92026 0.97257 1.19989 1.02003 0.99159 0.95324 1.18301 0.75612 0.75573 0.85276 1.93141 1.67044 1.67318 1.87520 1.93256 1.83296 1.45598 1.94630 1.93216 1.56872 1.95345 1.70365 1.18003 0.90654 0.94438 1.01004 1.91233 1.53841 1.97304 1.72058 0.89499 0.86455 0.85195 0.85808 0.80429 0.78539 0.80860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.57 10.97 21.83 0.24 -42.33 16 2 C 0.04 2.07 5.15 85.25 0.44 2.51 16 3 Si 0.98 39.12 29.59 68.60 2.03 41.15 16 4 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 5 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 6 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 7 C -0.49 -28.18 8.77 23.44 0.21 -27.98 16 8 H 0.07 3.92 7.74 -2.91 -0.02 3.90 16 9 C 0.05 3.12 5.57 -21.27 -0.12 3.01 16 10 C -0.15 -8.20 8.68 22.75 0.20 -8.00 16 11 C -0.11 -5.03 10.01 22.19 0.22 -4.81 16 12 C -0.18 -8.06 8.79 22.65 0.20 -7.86 16 13 C -0.09 -4.00 3.30 -20.05 -0.07 -4.07 16 14 C -0.04 -1.43 4.90 -20.00 -0.10 -1.53 16 15 C 0.08 2.66 7.28 22.59 0.16 2.82 16 16 F -0.14 -5.63 16.82 44.97 0.76 -4.87 16 17 C -0.11 -2.35 10.02 22.28 0.22 -2.13 16 18 C -0.08 -1.20 10.04 22.30 0.22 -0.98 16 19 C -0.08 -1.65 9.42 22.24 0.21 -1.44 16 20 C -0.16 -5.25 5.39 -19.66 -0.11 -5.36 16 21 C 0.51 17.71 2.89 71.23 0.21 17.92 16 22 F -0.17 -4.81 15.97 44.97 0.72 -4.09 16 23 F -0.19 -7.93 15.68 44.97 0.71 -7.22 16 24 F -0.18 -6.58 15.70 44.97 0.71 -5.87 16 25 C -0.02 -1.13 6.27 23.10 0.14 -0.98 16 26 F -0.17 -9.04 16.27 44.97 0.73 -8.31 16 27 H 0.29 13.65 8.30 -92.71 -0.77 12.89 16 28 H 0.12 6.32 6.19 -2.91 -0.02 6.30 16 29 H 0.13 5.04 8.06 -2.91 -0.02 5.02 16 30 H 0.12 4.78 8.06 -2.91 -0.02 4.76 16 31 H 0.18 2.49 8.06 -2.91 -0.02 2.47 16 32 H 0.20 1.05 8.06 -2.91 -0.02 1.03 16 33 H 0.17 2.56 7.15 -2.91 -0.02 2.54 16 Total: -1.00 -68.38 310.40 9.13 -59.26 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 1.20 Total: 11.18 kcal Atomic # 6 Polarization: -40.93 SS G_CDS: 2.05 Total: -38.88 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: 0.24 Total: -42.33 kcal Atomic # 9 Polarization: -33.99 SS G_CDS: 3.62 Total: -30.37 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Total: -68.38 9.13 -59.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242302948.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.451 kcal (2) G-P(sol) polarization free energy of solvation -68.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds