Wall clock time and date at job start Tue Mar 31 2020 15:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30794 * 1 3 3 Si 1.86801 * 120.00227 * 2 1 4 4 H 1.48508 * 109.46920 * 270.00653 * 3 2 1 5 5 H 1.48500 * 109.46932 * 30.00009 * 3 2 1 6 6 H 1.48499 * 109.47269 * 150.00422 * 3 2 1 7 7 C 1.40062 * 119.99970 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00122 * 159.43023 * 7 2 1 9 9 C 1.40786 * 120.00244 * 339.43592 * 7 2 1 10 10 C 1.41037 * 120.34314 * 323.91141 * 9 7 2 11 11 F 1.35095 * 120.10440 * 0.04470 * 10 9 7 12 12 C 1.37738 * 119.79619 * 180.34208 * 10 9 7 13 13 C 1.38816 * 120.52487 * 359.66001 * 12 10 9 14 14 C 1.38123 * 120.72105 * 0.02562 * 13 12 10 15 15 C 1.39089 * 120.17650 * 0.02562 * 14 13 12 16 16 C 1.47833 * 120.26336 * 179.97438 * 15 14 13 17 17 C 1.39895 * 120.16323 * 90.00136 * 16 15 14 18 18 F 1.35092 * 120.10367 * 359.97438 * 17 16 15 19 19 C 1.38181 * 119.79208 * 179.97438 * 17 16 15 20 20 C 1.38343 * 120.11844 * 0.02562 * 19 17 16 21 21 C 1.38398 * 120.33570 * 0.25567 * 20 19 17 22 22 C 1.37933 * 120.20227 * 359.44209 * 21 20 19 23 23 C 1.50705 * 120.06090 * 180.27981 * 22 21 20 24 24 F 1.39900 * 109.47168 * 0.29573 * 23 22 21 25 25 F 1.39894 * 109.47288 * 120.30104 * 23 22 21 26 26 F 1.39910 * 109.47055 * 240.30188 * 23 22 21 27 27 H 0.97000 * 120.00204 * 359.97438 * 1 2 3 28 28 H 1.07995 * 119.73566 * 179.68120 * 12 10 9 29 29 H 1.08003 * 119.63756 * 180.02562 * 13 12 10 30 30 H 1.07997 * 119.91652 * 179.97438 * 14 13 12 31 31 H 1.07995 * 119.93460 * 180.02562 * 19 17 16 32 32 H 1.08000 * 119.82684 * 179.97438 * 20 19 17 33 33 H 1.07994 * 119.89977 * 179.70946 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 2.4894 2.0464 -1.4002 5 1 1.4395 2.6526 0.7000 6 1 3.5396 1.4401 0.6999 7 6 2.0082 -1.2130 -0.0005 8 1 3.0366 -1.2427 -0.3292 9 6 1.3716 -2.3936 0.4272 10 6 0.4429 -2.3581 1.4880 11 9 0.1578 -1.1880 2.1001 12 6 -0.1681 -3.5211 1.9020 13 6 0.1176 -4.7281 1.2787 14 6 1.0187 -4.7866 0.2335 15 6 1.6536 -3.6304 -0.2078 16 6 2.6188 -3.6909 -1.3259 17 6 2.1792 -3.5264 -2.6437 18 9 0.8701 -3.3120 -2.8996 19 6 3.0881 -3.5838 -3.6829 20 6 4.4286 -3.8039 -3.4214 21 6 4.8683 -3.9731 -2.1200 22 6 3.9737 -3.9122 -1.0719 23 6 4.4569 -4.0907 0.3444 24 9 5.8406 -4.2970 0.3425 25 9 4.1573 -2.9438 1.0873 26 9 3.8212 -5.1972 0.9180 27 1 -0.4850 0.8400 0.0004 28 1 -0.8753 -3.4936 2.7177 29 1 -0.3701 -5.6313 1.6146 30 1 1.2316 -5.7327 -0.2418 31 1 2.7513 -3.4567 -4.7011 32 1 5.1349 -3.8483 -4.2372 33 1 5.9156 -4.1492 -1.9242 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242303742.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:33 Heat of formation + Delta-G solvation = -190.279743 kcal Electronic energy + Delta-G solvation = -29084.936352 eV Core-core repulsion = 24296.521715 eV Total energy + Delta-G solvation = -4788.414638 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.58896 -48.27132 -47.17560 -47.01912 -46.91715 -38.98289 -37.07752 -33.73173 -32.24253 -30.98143 -29.68265 -28.29729 -25.75678 -25.23723 -22.86947 -21.70955 -21.07377 -20.28719 -18.16063 -17.94420 -17.84112 -17.47199 -16.36760 -15.86932 -15.66200 -15.49544 -15.05234 -14.91301 -14.48027 -14.28998 -13.95043 -13.86880 -13.75745 -13.46926 -13.35092 -13.15857 -13.11304 -12.89492 -12.69358 -12.24168 -12.16677 -11.92527 -11.64428 -11.50036 -11.35829 -11.29129 -10.76584 -10.71252 -10.63773 -10.22659 -9.59071 -9.14100 -8.88641 -8.27461 -7.64870 -7.25307 -6.89988 -4.52671 1.14128 1.43378 2.45533 2.71456 3.05920 3.08377 3.15144 3.16150 3.63941 3.90928 4.18859 4.46738 4.49189 4.70653 4.99199 5.06217 5.10239 5.21455 5.42635 5.45991 5.81375 5.95601 6.01034 6.16902 6.26524 6.36359 6.45149 6.46278 6.50916 6.93129 7.04418 7.06791 7.36359 7.49398 7.67112 7.72004 8.02645 8.31383 8.64908 8.74990 10.08590 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.011015 B = 0.007196 C = 0.006521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.381221 B = 3890.156248 C = 4292.872976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.082 3.918 3 Si 0.903 3.097 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.455 4.455 8 H 0.086 0.914 9 C 0.126 3.874 10 C 0.042 3.958 11 F -0.142 7.142 12 C -0.126 4.126 13 C -0.217 4.217 14 C -0.061 4.061 15 C -0.196 4.196 16 C 0.048 3.952 17 C 0.111 3.889 18 F -0.123 7.123 19 C -0.132 4.132 20 C -0.112 4.112 21 C -0.093 4.093 22 C -0.159 4.159 23 C 0.511 3.489 24 F -0.189 7.189 25 F -0.157 7.157 26 F -0.173 7.173 27 H 0.285 0.715 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.144 -5.697 -4.763 10.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.483 4.483 8 H 0.104 0.896 9 C 0.122 3.878 10 C 0.021 3.979 11 F -0.120 7.120 12 C -0.145 4.145 13 C -0.237 4.237 14 C -0.079 4.079 15 C -0.198 4.198 16 C 0.047 3.953 17 C 0.091 3.909 18 F -0.101 7.101 19 C -0.150 4.150 20 C -0.130 4.130 21 C -0.111 4.111 22 C -0.160 4.160 23 C 0.457 3.543 24 F -0.171 7.171 25 F -0.138 7.138 26 F -0.154 7.154 27 H 0.096 0.904 28 H 0.120 0.880 29 H 0.119 0.881 30 H 0.114 0.886 31 H 0.154 0.846 32 H 0.153 0.847 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.864 -5.479 -4.715 9.968 hybrid contribution -0.014 1.062 0.255 1.092 sum 6.850 -4.417 -4.460 9.291 Atomic orbital electron populations 1.69746 1.07839 1.30151 1.31060 1.25835 0.94593 1.01301 0.92331 0.86366 0.81032 0.80676 0.79228 1.19424 1.19859 1.18101 1.19300 0.99253 0.91138 1.38589 0.89644 1.17255 0.89767 0.91858 0.88902 1.17700 1.03524 0.80391 0.96258 1.91335 1.92466 1.46920 1.81323 1.20672 1.00463 0.92562 1.00799 1.20002 1.05496 0.96100 1.02066 1.20460 0.95801 0.95470 0.96195 1.18104 1.06699 0.94709 1.00273 1.18423 0.91652 0.92677 0.92517 1.17734 0.78965 1.01587 0.92578 1.91533 1.32348 1.91805 1.94417 1.21226 0.93405 1.01566 0.98851 1.20818 0.94798 1.01153 0.96268 1.20867 0.99516 0.98822 0.91898 1.20043 0.94555 1.09485 0.91937 1.18099 0.74029 0.74891 0.87292 1.93104 1.31992 1.95033 1.96973 1.93323 1.92626 1.49305 1.78535 1.93212 1.81783 1.53958 1.86462 0.90358 0.87977 0.88089 0.88622 0.84568 0.84704 0.84585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.17 11.12 55.55 0.62 -19.55 16 2 C 0.08 2.07 4.49 -17.31 -0.08 1.99 16 3 Si 0.90 19.18 29.61 -169.99 -5.03 14.14 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.46 -11.83 7.61 -37.94 -0.29 -12.12 16 8 H 0.09 2.18 7.00 -52.48 -0.37 1.81 16 9 C 0.13 3.25 4.60 -106.49 -0.49 2.76 16 10 C 0.04 1.08 6.68 -38.70 -0.26 0.82 16 11 F -0.14 -3.83 14.24 2.25 0.03 -3.80 16 12 C -0.13 -2.91 9.99 -39.55 -0.40 -3.31 16 13 C -0.22 -4.67 10.02 -39.41 -0.40 -5.06 16 14 C -0.06 -1.32 8.76 -39.31 -0.34 -1.67 16 15 C -0.20 -4.54 3.37 -104.27 -0.35 -4.89 16 16 C 0.05 0.99 4.17 -104.84 -0.44 0.55 16 17 C 0.11 2.11 7.29 -38.98 -0.28 1.82 16 18 F -0.12 -2.59 16.83 2.25 0.04 -2.56 16 19 C -0.13 -1.92 10.01 -39.56 -0.40 -2.32 16 20 C -0.11 -1.42 10.04 -39.48 -0.40 -1.82 16 21 C -0.09 -1.33 9.42 -39.63 -0.37 -1.70 16 22 C -0.16 -2.86 5.40 -104.22 -0.56 -3.42 16 23 C 0.51 9.47 2.89 36.01 0.10 9.58 16 24 F -0.19 -3.06 15.97 2.25 0.04 -3.02 16 25 F -0.16 -3.35 14.61 2.25 0.03 -3.32 16 26 F -0.17 -3.29 15.71 2.25 0.04 -3.25 16 27 H 0.29 6.90 8.30 -40.82 -0.34 6.56 16 28 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 29 H 0.10 1.87 8.06 -52.48 -0.42 1.44 16 30 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 31 H 0.14 1.60 8.06 -52.49 -0.42 1.17 16 32 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.14 1.60 7.15 -52.49 -0.38 1.22 16 LS Contribution 306.88 15.07 4.62 4.62 Total: -1.00 -28.33 306.88 -6.55 -34.88 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: -1.99 Total: 0.63 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -4.95 Total: -18.78 kcal Atomic # 7 Polarization: -20.17 SS G_CDS: 0.62 Total: -19.55 kcal Atomic # 9 Polarization: -16.12 SS G_CDS: 0.17 Total: -15.95 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.33 -6.55 -34.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242303742.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.397 kcal (2) G-P(sol) polarization free energy of solvation -28.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds