Wall clock time and date at job start Tue Mar 31 2020 15:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30794 * 1 3 3 Si 1.86801 * 120.00227 * 2 1 4 4 H 1.48508 * 109.46920 * 270.00653 * 3 2 1 5 5 H 1.48500 * 109.46932 * 30.00009 * 3 2 1 6 6 H 1.48499 * 109.47269 * 150.00422 * 3 2 1 7 7 C 1.40062 * 119.99970 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00122 * 159.43023 * 7 2 1 9 9 C 1.40786 * 120.00244 * 339.43592 * 7 2 1 10 10 C 1.41037 * 120.34314 * 323.91141 * 9 7 2 11 11 F 1.35095 * 120.10440 * 0.04470 * 10 9 7 12 12 C 1.37738 * 119.79619 * 180.34208 * 10 9 7 13 13 C 1.38816 * 120.52487 * 359.66001 * 12 10 9 14 14 C 1.38123 * 120.72105 * 0.02562 * 13 12 10 15 15 C 1.39089 * 120.17650 * 0.02562 * 14 13 12 16 16 C 1.47833 * 120.26336 * 179.97438 * 15 14 13 17 17 C 1.39895 * 120.16323 * 90.00136 * 16 15 14 18 18 F 1.35092 * 120.10367 * 359.97438 * 17 16 15 19 19 C 1.38181 * 119.79208 * 179.97438 * 17 16 15 20 20 C 1.38343 * 120.11844 * 0.02562 * 19 17 16 21 21 C 1.38398 * 120.33570 * 0.25567 * 20 19 17 22 22 C 1.37933 * 120.20227 * 359.44209 * 21 20 19 23 23 C 1.50705 * 120.06090 * 180.27981 * 22 21 20 24 24 F 1.39900 * 109.47168 * 0.29573 * 23 22 21 25 25 F 1.39894 * 109.47288 * 120.30104 * 23 22 21 26 26 F 1.39910 * 109.47055 * 240.30188 * 23 22 21 27 27 H 0.97000 * 120.00204 * 359.97438 * 1 2 3 28 28 H 1.07995 * 119.73566 * 179.68120 * 12 10 9 29 29 H 1.08003 * 119.63756 * 180.02562 * 13 12 10 30 30 H 1.07997 * 119.91652 * 179.97438 * 14 13 12 31 31 H 1.07995 * 119.93460 * 180.02562 * 19 17 16 32 32 H 1.08000 * 119.82684 * 179.97438 * 20 19 17 33 33 H 1.07994 * 119.89977 * 179.70946 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 2.4894 2.0464 -1.4002 5 1 1.4395 2.6526 0.7000 6 1 3.5396 1.4401 0.6999 7 6 2.0082 -1.2130 -0.0005 8 1 3.0366 -1.2427 -0.3292 9 6 1.3716 -2.3936 0.4272 10 6 0.4429 -2.3581 1.4880 11 9 0.1578 -1.1880 2.1001 12 6 -0.1681 -3.5211 1.9020 13 6 0.1176 -4.7281 1.2787 14 6 1.0187 -4.7866 0.2335 15 6 1.6536 -3.6304 -0.2078 16 6 2.6188 -3.6909 -1.3259 17 6 2.1792 -3.5264 -2.6437 18 9 0.8701 -3.3120 -2.8996 19 6 3.0881 -3.5838 -3.6829 20 6 4.4286 -3.8039 -3.4214 21 6 4.8683 -3.9731 -2.1200 22 6 3.9737 -3.9122 -1.0719 23 6 4.4569 -4.0907 0.3444 24 9 5.8406 -4.2970 0.3425 25 9 4.1573 -2.9438 1.0873 26 9 3.8212 -5.1972 0.9180 27 1 -0.4850 0.8400 0.0004 28 1 -0.8753 -3.4936 2.7177 29 1 -0.3701 -5.6313 1.6146 30 1 1.2316 -5.7327 -0.2418 31 1 2.7513 -3.4567 -4.7011 32 1 5.1349 -3.8483 -4.2372 33 1 5.9156 -4.1492 -1.9242 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242303742.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:33 Heat of formation + Delta-G solvation = -203.230806 kcal Electronic energy + Delta-G solvation = -29085.497953 eV Core-core repulsion = 24296.521715 eV Total energy + Delta-G solvation = -4788.976238 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.04413 -49.75822 -48.99965 -48.58741 -48.45815 -40.35536 -38.72516 -35.57248 -33.66325 -32.34677 -31.46848 -29.86826 -27.32653 -26.87071 -24.31270 -23.04765 -22.90983 -21.88197 -19.60863 -19.39943 -19.33278 -19.23602 -17.96095 -17.31300 -17.21803 -17.01385 -16.66430 -16.34903 -16.22259 -16.05159 -15.71592 -15.37701 -15.34693 -14.93399 -14.79449 -14.66788 -14.63914 -14.48869 -14.19029 -13.84748 -13.56403 -13.44487 -13.18871 -13.09929 -13.03639 -12.94565 -12.40923 -12.35563 -12.22847 -11.91728 -11.35289 -10.96668 -10.14089 -9.60668 -9.44101 -9.11488 -8.74069 -6.42994 -0.10793 0.17194 0.65852 0.89687 1.31575 1.40850 1.47017 1.75191 2.16225 2.40828 2.66240 2.79267 3.10779 3.35719 3.45589 3.53704 3.78595 3.97180 4.14799 4.17851 4.28911 4.30465 4.48167 4.70155 4.78118 5.00858 5.09122 5.14825 5.17853 5.22835 5.24791 5.56400 5.65484 5.80653 5.91454 5.92270 6.19251 6.43136 6.79434 6.88509 8.27126 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.011015 B = 0.007196 C = 0.006521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.381221 B = 3890.156248 C = 4292.872976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.041 3.959 3 Si 0.963 3.037 4 H -0.255 1.255 5 H -0.270 1.270 6 H -0.259 1.259 7 C -0.478 4.478 8 H 0.080 0.920 9 C 0.099 3.901 10 C -0.004 4.004 11 F -0.157 7.157 12 C -0.133 4.133 13 C -0.209 4.209 14 C -0.074 4.074 15 C -0.184 4.184 16 C 0.010 3.990 17 C 0.076 3.924 18 F -0.147 7.147 19 C -0.118 4.118 20 C -0.088 4.088 21 C -0.083 4.083 22 C -0.172 4.172 23 C 0.509 3.491 24 F -0.174 7.174 25 F -0.180 7.180 26 F -0.180 7.180 27 H 0.288 0.712 28 H 0.121 0.879 29 H 0.137 0.863 30 H 0.120 0.880 31 H 0.169 0.831 32 H 0.190 0.810 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.399 -6.839 -6.852 13.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.177 4.177 3 Si 0.784 3.216 4 H -0.180 1.180 5 H -0.194 1.194 6 H -0.183 1.183 7 C -0.507 4.507 8 H 0.098 0.902 9 C 0.096 3.904 10 C -0.024 4.024 11 F -0.136 7.136 12 C -0.152 4.152 13 C -0.228 4.228 14 C -0.092 4.092 15 C -0.186 4.186 16 C 0.009 3.991 17 C 0.057 3.943 18 F -0.126 7.126 19 C -0.136 4.136 20 C -0.105 4.105 21 C -0.100 4.100 22 C -0.174 4.174 23 C 0.455 3.545 24 F -0.155 7.155 25 F -0.161 7.161 26 F -0.161 7.161 27 H 0.098 0.902 28 H 0.139 0.861 29 H 0.155 0.845 30 H 0.138 0.862 31 H 0.187 0.813 32 H 0.207 0.793 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 9.125 -6.640 -6.807 13.179 hybrid contribution -0.632 1.176 0.851 1.583 sum 8.493 -5.464 -5.956 11.725 Atomic orbital electron populations 1.69806 1.09174 1.30878 1.33258 1.26605 0.95207 1.04244 0.91648 0.85469 0.79493 0.76836 0.79788 1.17954 1.19423 1.18251 1.19357 0.99129 0.92032 1.40165 0.90189 1.17599 0.90359 0.93178 0.89276 1.18187 1.05655 0.80840 0.97720 1.91271 1.92782 1.47903 1.81670 1.20985 1.00536 0.92327 1.01367 1.20477 1.04540 0.96693 1.01052 1.20877 0.95651 0.96282 0.96379 1.18512 1.05966 0.93996 1.00110 1.18418 0.92301 0.96057 0.92332 1.18142 0.78839 1.03918 0.93402 1.91465 1.34202 1.92390 1.94532 1.21659 0.93474 0.99325 0.99138 1.21446 0.94630 0.97510 0.96933 1.21342 1.00343 0.96749 0.91607 1.20076 0.94220 1.10815 0.92279 1.18267 0.74676 0.74020 0.87583 1.93122 1.30622 1.94869 1.96925 1.93280 1.92920 1.50648 1.79248 1.93188 1.82071 1.54142 1.86703 0.90160 0.86096 0.84539 0.86208 0.81335 0.79297 0.81441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.50 11.12 21.85 0.24 -44.26 16 2 C 0.04 2.14 4.49 85.29 0.38 2.52 16 3 Si 0.96 40.31 29.61 68.60 2.03 42.34 16 4 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 5 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 6 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 7 C -0.48 -25.87 7.61 23.34 0.18 -25.69 16 8 H 0.08 4.24 7.00 -2.91 -0.02 4.22 16 9 C 0.10 5.32 4.60 -21.07 -0.10 5.22 16 10 C 0.00 -0.21 6.68 22.84 0.15 -0.06 16 11 F -0.16 -8.97 14.24 44.97 0.64 -8.33 16 12 C -0.13 -6.27 9.99 22.29 0.22 -6.05 16 13 C -0.21 -8.83 10.02 22.38 0.22 -8.60 16 14 C -0.07 -3.19 8.76 22.45 0.20 -2.99 16 15 C -0.18 -8.69 3.37 -19.64 -0.07 -8.75 16 16 C 0.01 0.41 4.17 -20.01 -0.08 0.32 16 17 C 0.08 2.83 7.29 22.66 0.17 3.00 16 18 F -0.15 -6.34 16.83 44.97 0.76 -5.58 16 19 C -0.12 -3.00 10.01 22.28 0.22 -2.78 16 20 C -0.09 -1.74 10.04 22.33 0.22 -1.52 16 21 C -0.08 -2.02 9.42 22.24 0.21 -1.81 16 22 C -0.17 -5.95 5.40 -19.60 -0.11 -6.05 16 23 C 0.51 18.50 2.89 71.24 0.21 18.70 16 24 F -0.17 -5.28 15.97 44.97 0.72 -4.56 16 25 F -0.18 -7.84 14.61 44.97 0.66 -7.19 16 26 F -0.18 -6.76 15.71 44.97 0.71 -6.05 16 27 H 0.29 14.59 8.30 -92.71 -0.77 13.82 16 28 H 0.12 5.07 8.06 -2.91 -0.02 5.04 16 29 H 0.14 4.72 8.06 -2.91 -0.02 4.70 16 30 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 31 H 0.17 3.17 8.06 -2.91 -0.02 3.15 16 32 H 0.19 1.83 8.06 -2.91 -0.02 1.80 16 33 H 0.17 3.04 7.15 -2.91 -0.02 3.02 16 Total: -1.00 -66.42 306.88 8.98 -57.44 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 1.19 Total: 10.74 kcal Atomic # 6 Polarization: -36.58 SS G_CDS: 2.03 Total: -34.55 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: 0.24 Total: -44.26 kcal Atomic # 9 Polarization: -35.19 SS G_CDS: 3.48 Total: -31.71 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.34 kcal Total: -66.42 8.98 -57.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242303742.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.788 kcal (2) G-P(sol) polarization free energy of solvation -66.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds