Wall clock time and date at job start Tue Mar 31 2020 15:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30849 * 1 3 3 Si 1.86803 * 120.00081 * 2 1 4 4 H 1.48497 * 109.47104 * 270.00371 * 3 2 1 5 5 H 1.48509 * 109.46956 * 29.99886 * 3 2 1 6 6 H 1.48499 * 109.47282 * 150.00072 * 3 2 1 7 7 C 1.39913 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00326 * 197.80269 * 7 2 1 9 9 C 1.41322 * 120.00102 * 17.80422 * 7 2 1 10 10 C 1.40536 * 120.20134 * 24.60545 * 9 7 2 11 11 C 1.38679 * 119.65473 * 179.97438 * 10 9 7 12 12 C 1.48368 * 119.96564 * 179.97438 * 11 10 9 13 13 C 1.39571 * 120.13708 * 65.00431 * 12 11 10 14 14 F 1.35104 * 120.08045 * 359.97438 * 13 12 11 15 15 C 1.38228 * 119.83214 * 179.97438 * 13 12 11 16 16 C 1.38307 * 120.09309 * 359.97438 * 15 13 12 17 17 C 1.38315 * 120.26925 * 0.27104 * 16 15 13 18 18 C 1.38050 * 120.16905 * 359.49226 * 17 16 15 19 19 C 1.50701 * 120.04283 * 180.23734 * 18 17 16 20 20 F 1.39905 * 109.47639 * 0.25277 * 19 18 17 21 21 F 1.39905 * 109.47362 * 120.25422 * 19 18 17 22 22 F 1.39905 * 109.47065 * 240.25028 * 19 18 17 23 23 C 1.39832 * 120.06532 * 0.25856 * 11 10 9 24 24 C 1.38230 * 120.42276 * 359.47935 * 23 11 10 25 25 C 1.38078 * 120.34571 * 0.51820 * 24 23 11 26 26 F 1.35100 * 120.04040 * 179.76122 * 25 24 23 27 27 H 0.97008 * 120.00177 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.17910 * 359.95803 * 10 9 7 29 29 H 1.08002 * 119.95977 * 179.97438 * 15 13 12 30 30 H 1.08001 * 119.86675 * 179.97438 * 16 15 13 31 31 H 1.07997 * 119.91724 * 179.73047 * 17 16 15 32 32 H 1.08002 * 119.78628 * 179.74285 * 23 11 10 33 33 H 1.07995 * 119.82782 * 180.26307 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.4900 2.0465 -1.4000 5 1 1.4399 2.6527 0.7001 6 1 3.5401 1.4402 0.7000 7 6 2.0081 -1.2117 0.0005 8 1 3.0494 -1.2340 0.2865 9 6 1.3523 -2.4064 -0.3731 10 6 0.2247 -2.3617 -1.2107 11 6 -0.4098 -3.5412 -1.5707 12 6 -1.6011 -3.5020 -2.4541 13 6 -1.4825 -3.0558 -3.7713 14 9 -0.2818 -2.6575 -4.2457 15 6 -2.5964 -3.0224 -4.5890 16 6 -3.8255 -3.4305 -4.1036 17 6 -3.9487 -3.8687 -2.7974 18 6 -2.8425 -3.9112 -1.9727 19 6 -2.9789 -4.3941 -0.5517 20 9 -4.3101 -4.7466 -0.3046 21 9 -2.1574 -5.5097 -0.3573 22 9 -2.5959 -3.3744 0.3262 23 6 0.0686 -4.7668 -1.0971 24 6 1.1807 -4.8146 -0.2775 25 6 1.8257 -3.6509 0.0917 26 9 2.9092 -3.7045 0.8969 27 1 -0.4851 0.8401 0.0004 28 1 -0.1461 -1.4139 -1.5719 29 1 -2.5070 -2.6771 -5.6084 30 1 -4.6936 -3.4025 -4.7455 31 1 -4.9120 -4.1820 -2.4230 32 1 -0.4315 -5.6822 -1.3770 33 1 1.5445 -5.7668 0.0792 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242304381.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:56 Heat of formation + Delta-G solvation = -195.536209 kcal Electronic energy + Delta-G solvation = -28354.416446 eV Core-core repulsion = 23565.773870 eV Total energy + Delta-G solvation = -4788.642575 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.73342 -48.57120 -47.32211 -47.28986 -47.06410 -39.20212 -37.22647 -33.96850 -32.27278 -31.13584 -29.87623 -28.17336 -25.77981 -25.43814 -22.94829 -22.05441 -21.32329 -20.22050 -18.39959 -18.10428 -17.99164 -17.43848 -16.19640 -16.13509 -15.94424 -15.85532 -15.41390 -15.12340 -14.57166 -14.28291 -14.06784 -14.02901 -13.97971 -13.67059 -13.34494 -13.27373 -13.21294 -12.81941 -12.70283 -12.41520 -12.36537 -12.09096 -11.84976 -11.67742 -11.50580 -11.19709 -11.09938 -10.66356 -10.49111 -10.05213 -9.67841 -9.34779 -9.13821 -8.62035 -7.68463 -7.37209 -6.89897 -4.48771 0.89533 1.14150 2.44817 2.68330 2.99512 3.02353 3.06907 3.09519 3.42879 3.85349 4.02636 4.26102 4.37173 4.49358 4.84333 4.87469 4.93403 5.04852 5.24200 5.37982 5.58327 5.84405 5.96623 6.00808 6.11898 6.15860 6.19256 6.40180 6.77509 6.80476 6.94371 7.07429 7.31399 7.46566 7.69283 7.82545 7.94759 8.38378 8.63706 8.70232 10.03456 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.012340 B = 0.005606 C = 0.004943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.528646 B = 4993.735517 C = 5662.994329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.076 3.924 3 Si 0.913 3.087 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.450 4.450 8 H 0.085 0.915 9 C 0.082 3.918 10 C -0.099 4.099 11 C -0.088 4.088 12 C 0.012 3.988 13 C 0.104 3.896 14 F -0.123 7.123 15 C -0.127 4.127 16 C -0.109 4.109 17 C -0.088 4.088 18 C -0.153 4.153 19 C 0.511 3.489 20 F -0.188 7.188 21 F -0.166 7.166 22 F -0.159 7.159 23 C -0.190 4.190 24 C -0.122 4.122 25 C -0.018 4.018 26 F -0.161 7.161 27 H 0.284 0.716 28 H 0.129 0.871 29 H 0.140 0.860 30 H 0.139 0.861 31 H 0.140 0.860 32 H 0.109 0.891 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.167 -4.279 -7.129 12.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.144 4.144 3 Si 0.737 3.263 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.479 4.479 8 H 0.103 0.897 9 C 0.079 3.921 10 C -0.119 4.119 11 C -0.089 4.089 12 C 0.011 3.989 13 C 0.084 3.916 14 F -0.102 7.102 15 C -0.146 4.146 16 C -0.127 4.127 17 C -0.106 4.106 18 C -0.155 4.155 19 C 0.456 3.544 20 F -0.169 7.169 21 F -0.147 7.147 22 F -0.140 7.140 23 C -0.209 4.209 24 C -0.141 4.141 25 C -0.038 4.038 26 F -0.140 7.140 27 H 0.095 0.905 28 H 0.147 0.853 29 H 0.158 0.842 30 H 0.157 0.843 31 H 0.158 0.842 32 H 0.127 0.873 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.281 -4.104 -7.045 12.354 hybrid contribution 0.636 0.752 0.341 1.042 sum -8.645 -3.352 -6.704 11.442 Atomic orbital electron populations 1.69812 1.07583 1.29729 1.33789 1.25929 0.94795 1.01562 0.92066 0.86221 0.80579 0.80031 0.79507 1.19050 1.20096 1.18356 1.19517 0.98496 0.90784 1.39096 0.89668 1.17492 0.92392 0.91146 0.91083 1.21145 0.96741 0.95818 0.98184 1.18280 0.95106 0.95077 1.00407 1.18800 0.93458 0.94392 0.92294 1.17602 0.81572 1.00593 0.91810 1.91552 1.42762 1.87926 1.87929 1.21263 0.91835 1.00974 1.00483 1.20877 0.97077 0.99551 0.95166 1.20945 0.97806 0.98219 0.93646 1.19934 0.94939 1.07361 0.93261 1.18082 0.73057 0.76145 0.87079 1.93117 1.36063 1.92428 1.95308 1.93235 1.71817 1.53801 1.95893 1.93320 1.90735 1.58930 1.71017 1.20345 0.99679 0.95434 1.05445 1.20378 0.97165 0.95860 1.00743 1.17940 0.90602 0.94736 1.00532 1.91279 1.53424 1.97300 1.72028 0.90467 0.85349 0.84182 0.84330 0.84198 0.87316 0.87677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.85 10.96 55.55 0.61 -19.24 16 2 C 0.08 1.87 5.14 -17.34 -0.09 1.79 16 3 Si 0.91 18.57 29.59 -169.99 -5.03 13.54 16 4 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.45 -12.01 8.78 -37.78 -0.33 -12.34 16 8 H 0.09 2.25 7.73 -52.48 -0.41 1.84 16 9 C 0.08 2.19 5.58 -106.80 -0.60 1.60 16 10 C -0.10 -2.51 8.18 -38.55 -0.32 -2.83 16 11 C -0.09 -1.98 3.76 -104.97 -0.40 -2.37 16 12 C 0.01 0.22 5.29 -104.84 -0.56 -0.33 16 13 C 0.10 1.77 7.24 -39.09 -0.28 1.49 16 14 F -0.12 -2.32 16.67 2.25 0.04 -2.28 16 15 C -0.13 -1.61 10.02 -39.56 -0.40 -2.01 16 16 C -0.11 -1.19 10.04 -39.53 -0.40 -1.59 16 17 C -0.09 -1.13 9.42 -39.62 -0.37 -1.50 16 18 C -0.15 -2.56 5.39 -104.30 -0.56 -3.13 16 19 C 0.51 9.01 2.88 36.01 0.10 9.11 16 20 F -0.19 -2.86 15.97 2.25 0.04 -2.83 16 21 F -0.17 -3.04 13.24 2.25 0.03 -3.01 16 22 F -0.16 -3.32 16.52 2.25 0.04 -3.28 16 23 C -0.19 -4.14 7.57 -38.99 -0.30 -4.43 16 24 C -0.12 -2.79 9.99 -39.64 -0.40 -3.19 16 25 C -0.02 -0.45 7.31 -38.58 -0.28 -0.74 16 26 F -0.16 -4.09 16.70 2.25 0.04 -4.05 16 27 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 28 H 0.13 3.36 6.16 -52.49 -0.32 3.04 16 29 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 30 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 31 H 0.14 1.45 7.15 -52.49 -0.38 1.07 16 32 H 0.11 2.15 6.50 -52.49 -0.34 1.81 16 33 H 0.11 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 307.57 15.07 4.64 4.64 Total: -1.00 -28.03 307.57 -6.62 -34.65 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -1.85 Total: 2.34 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: -5.16 Total: -20.47 kcal Atomic # 7 Polarization: -19.85 SS G_CDS: 0.61 Total: -19.24 kcal Atomic # 9 Polarization: -15.62 SS G_CDS: 0.18 Total: -15.44 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.03 -6.62 -34.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242304381.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.882 kcal (2) G-P(sol) polarization free energy of solvation -28.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds