Wall clock time and date at job start Tue Mar 31 2020 15:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86802 * 120.00096 * 2 1 4 4 H 1.48496 * 109.47228 * 269.72406 * 3 2 1 5 5 H 1.48505 * 109.46578 * 29.72293 * 3 2 1 6 6 H 1.48498 * 109.47025 * 149.71840 * 3 2 1 7 7 C 1.38649 * 119.99645 * 179.72426 * 2 1 3 8 8 H 1.08006 * 119.99657 * 180.27568 * 7 2 1 9 9 O 1.34806 * 120.00285 * 0.27423 * 7 2 1 10 10 C 1.35675 * 117.00116 * 174.93213 * 9 7 2 11 11 C 1.38706 * 120.11704 * 5.61071 * 10 9 7 12 12 C 1.38333 * 120.01949 * 179.79207 * 11 10 9 13 13 F 1.35105 * 119.85890 * 180.23065 * 12 11 10 14 14 C 1.38674 * 120.27767 * 0.45618 * 12 11 10 15 15 C 1.37973 * 120.23905 * 359.79479 * 14 12 11 16 16 C 1.39298 * 119.97328 * 359.97438 * 15 14 12 17 17 C 1.48280 * 120.13388 * 180.02562 * 16 15 14 18 18 C 1.39765 * 120.92235 * 129.70323 * 17 16 15 19 19 N 1.32189 * 118.94326 * 179.76614 * 18 17 16 20 20 C 1.31831 * 120.95085 * 0.51623 * 19 18 17 21 21 C 1.50702 * 118.97211 * 179.75121 * 20 19 18 22 22 F 1.39900 * 109.47162 * 284.97825 * 21 20 19 23 23 F 1.39902 * 109.47087 * 44.98017 * 21 20 19 24 24 F 1.39904 * 109.47069 * 164.97633 * 21 20 19 25 25 N 1.31829 * 122.05683 * 359.72902 * 20 19 18 26 26 C 1.32187 * 120.94913 * 0.02562 * 25 20 19 27 27 H 0.97001 * 119.99726 * 179.97438 * 1 2 3 28 28 H 1.08001 * 119.98740 * 0.02562 * 11 10 9 29 29 H 1.07992 * 119.88151 * 179.77311 * 14 12 11 30 30 H 1.08000 * 120.01219 * 179.97438 * 15 14 12 31 31 H 1.08002 * 120.52987 * 0.02562 * 18 17 16 32 32 H 1.08005 * 120.53035 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.5030 2.0431 -1.4000 5 1 1.4441 2.6543 0.6942 6 1 3.5442 1.4419 0.7060 7 6 2.0088 -1.2008 0.0058 8 1 3.0888 -1.2008 0.0103 9 8 1.3348 -2.3682 0.0058 10 6 2.0700 -3.5040 -0.0952 11 6 3.4555 -3.4403 -0.0754 12 6 4.2031 -4.6000 -0.1742 13 9 5.5523 -4.5345 -0.1499 14 6 3.5736 -5.8289 -0.3027 15 6 2.1962 -5.9046 -0.3288 16 6 1.4333 -4.7437 -0.2253 17 6 -0.0473 -4.8211 -0.2524 18 6 -0.8176 -4.1871 0.7264 19 7 -2.1348 -4.2777 0.6619 20 6 -2.7211 -4.9614 -0.3008 21 6 -4.2258 -5.0400 -0.3283 22 9 -4.6649 -5.9222 0.6647 23 9 -4.7634 -3.7697 -0.0946 24 9 -4.6459 -5.5009 -1.5807 25 7 -2.0322 -5.5782 -1.2404 26 6 -0.7111 -5.5351 -1.2539 27 1 -0.4850 -0.8401 -0.0004 28 1 3.9506 -2.4853 0.0209 29 1 4.1635 -6.7298 -0.3831 30 1 1.7097 -6.8636 -0.4295 31 1 -0.3444 -3.6286 1.5205 32 1 -0.1534 -6.0425 -2.0272 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242663034.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:01 Heat of formation + Delta-G solvation = -166.063297 kcal Electronic energy + Delta-G solvation = -27034.257834 eV Core-core repulsion = 22266.813262 eV Total energy + Delta-G solvation = -4767.444572 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -51.36351 -49.95665 -48.88591 -48.84493 -42.46373 -40.93457 -38.37915 -35.20970 -34.83075 -34.39613 -31.38796 -30.72855 -27.91553 -27.15046 -25.99922 -24.66973 -23.65989 -22.78439 -20.60202 -20.23189 -19.91069 -19.79500 -19.29443 -18.51925 -17.77127 -17.50128 -16.75930 -16.68313 -16.56247 -16.19146 -15.81700 -15.65980 -15.63529 -15.60014 -15.53178 -15.26669 -15.14080 -14.98999 -14.97419 -14.82586 -14.21197 -14.07858 -13.64196 -13.02049 -12.80800 -12.50549 -12.47570 -12.24255 -12.22858 -11.96941 -11.61383 -11.15532 -10.84641 -10.72801 -9.77490 -9.19427 -9.00358 -6.33517 -0.92699 -0.24463 0.17812 0.40879 1.02489 1.47923 1.58202 1.74101 2.12004 2.16803 2.26110 2.37978 2.54856 2.94346 3.05538 3.13473 3.18352 3.26433 3.33936 3.48259 3.53141 3.72769 3.93605 4.13882 4.31346 4.59270 4.67561 4.85127 4.97458 5.09803 5.15534 5.25196 5.44693 5.51714 5.84088 6.12716 6.45269 6.72776 7.41449 8.42481 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.010576 B = 0.004562 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.982880 B = 6136.569747 C = 8437.703930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.032 4.032 3 Si 1.140 2.860 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.486 4.486 8 H 0.095 0.905 9 O -0.219 6.219 10 C 0.169 3.831 11 C -0.280 4.280 12 C 0.151 3.849 13 F -0.143 7.143 14 C -0.214 4.214 15 C -0.004 4.004 16 C -0.151 4.151 17 C -0.076 4.076 18 C 0.158 3.842 19 N -0.491 5.491 20 C 0.200 3.800 21 C 0.555 3.445 22 F -0.162 7.162 23 F -0.166 7.166 24 F -0.153 7.153 25 N -0.480 5.480 26 C 0.163 3.837 27 H 0.263 0.737 28 H 0.129 0.871 29 H 0.169 0.831 30 H 0.180 0.820 31 H 0.167 0.833 32 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.542 -13.157 -1.572 13.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.231 4.231 3 Si 0.956 3.044 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.182 1.182 7 C -0.562 4.562 8 H 0.112 0.888 9 O -0.124 6.124 10 C 0.116 3.884 11 C -0.300 4.300 12 C 0.131 3.869 13 F -0.122 7.122 14 C -0.233 4.233 15 C -0.022 4.022 16 C -0.154 4.154 17 C -0.080 4.080 18 C -0.006 4.006 19 N -0.205 5.205 20 C -0.070 4.070 21 C 0.498 3.502 22 F -0.143 7.143 23 F -0.148 7.148 24 F -0.134 7.134 25 N -0.193 5.193 26 C -0.003 4.003 27 H 0.072 0.928 28 H 0.146 0.854 29 H 0.187 0.813 30 H 0.197 0.803 31 H 0.184 0.816 32 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 0.067 -11.487 -1.556 11.592 hybrid contribution 1.101 -0.973 0.267 1.494 sum 1.169 -12.460 -1.289 12.581 Atomic orbital electron populations 1.70713 1.07752 1.30469 1.44845 1.28162 0.96689 1.04627 0.93620 0.82607 0.74026 0.69258 0.78482 1.19178 1.20118 1.18205 1.22587 0.93744 0.82496 1.57342 0.88803 1.83651 1.36093 1.12792 1.79831 1.19268 0.89791 0.87064 0.92254 1.21038 0.93820 0.99320 1.15838 1.17730 0.76202 0.94500 0.98447 1.91465 1.29739 1.97368 1.93580 1.21050 0.95276 0.96244 1.10696 1.21071 0.92137 0.96852 0.92108 1.17714 0.89759 0.91450 1.16503 1.20569 0.94994 0.96808 0.95651 1.23403 0.87248 0.92786 0.97194 1.67857 1.13335 1.15367 1.23904 1.22633 0.95688 0.96945 0.91697 1.16961 0.84397 0.74312 0.74496 1.93238 1.90424 1.68872 1.61769 1.93253 1.87153 1.40064 1.94298 1.93245 1.90810 1.88629 1.40753 1.67975 1.09860 1.18605 1.22841 1.24067 0.87908 0.92843 0.95521 0.92779 0.85360 0.81331 0.80313 0.81589 0.75879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.93 13.70 21.61 0.30 -52.63 16 2 C -0.03 -1.69 5.49 84.83 0.47 -1.23 16 3 Si 1.14 45.30 29.92 68.60 2.05 47.35 16 4 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 5 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 6 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 7 C -0.49 -25.32 9.49 67.92 0.64 -24.68 16 8 H 0.09 4.60 5.21 -2.91 -0.02 4.59 16 9 O -0.22 -10.91 7.61 -21.67 -0.16 -11.07 16 10 C 0.17 6.83 6.58 22.80 0.15 6.98 16 11 C -0.28 -10.62 9.14 22.40 0.20 -10.41 16 12 C 0.15 4.63 7.29 22.40 0.16 4.79 16 13 F -0.14 -4.32 17.26 44.97 0.78 -3.54 16 14 C -0.21 -4.93 10.01 22.31 0.22 -4.71 16 15 C 0.00 -0.09 9.54 22.46 0.21 0.13 16 16 C -0.15 -4.74 5.53 -19.93 -0.11 -4.85 16 17 C -0.08 -2.39 5.28 -19.87 -0.10 -2.50 16 18 C 0.16 5.77 10.12 85.01 0.86 6.63 16 19 N -0.49 -18.28 10.19 -186.96 -1.91 -20.19 16 20 C 0.20 6.79 7.09 138.73 0.98 7.77 16 21 C 0.56 17.10 3.49 71.24 0.25 17.35 16 22 F -0.16 -4.65 17.30 44.97 0.78 -3.87 16 23 F -0.17 -5.49 17.19 44.97 0.77 -4.72 16 24 F -0.15 -4.42 16.87 44.97 0.76 -3.66 16 25 N -0.48 -14.64 9.81 -186.96 -1.83 -16.48 16 26 C 0.16 4.29 10.85 85.01 0.92 5.21 16 27 H 0.26 16.03 7.97 -92.71 -0.74 15.29 16 28 H 0.13 5.23 5.64 -2.91 -0.02 5.22 16 29 H 0.17 2.67 8.06 -2.91 -0.02 2.64 16 30 H 0.18 2.33 8.06 -2.91 -0.02 2.31 16 31 H 0.17 6.38 7.79 -2.91 -0.02 6.36 16 32 H 0.22 3.76 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -63.82 311.84 7.65 -56.17 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 1.26 Total: 12.14 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: 4.87 Total: 0.49 kcal Atomic # 7 Polarization: -85.85 SS G_CDS: -3.44 Total: -89.29 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -0.16 Total: -11.07 kcal Atomic # 9 Polarization: -18.87 SS G_CDS: 3.09 Total: -15.79 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.05 Total: 47.35 kcal Total: -63.82 7.65 -56.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242663034.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.897 kcal (2) G-P(sol) polarization free energy of solvation -63.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds