Wall clock time and date at job start Tue Mar 31 2020 15:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35858 * 116.99994 * 2 1 4 4 C 1.39092 * 119.88027 * 89.99977 * 3 2 1 5 5 F 1.35109 * 119.94374 * 359.97438 * 4 3 2 6 6 C 1.38108 * 120.11979 * 180.02562 * 4 3 2 7 7 F 1.35100 * 120.05965 * 179.97438 * 6 4 3 8 8 C 1.40091 * 119.87746 * 359.97438 * 6 4 3 9 9 C 1.47450 * 120.11689 * 180.02562 * 8 6 4 10 10 N 1.33100 * 120.56200 * 304.79107 * 9 8 6 11 11 C 1.31887 * 120.02852 * 180.02562 * 10 9 8 12 12 C 1.39025 * 121.23666 * 359.97438 * 11 10 9 13 13 N 1.31522 * 121.15251 * 0.02562 * 12 11 10 14 14 C 1.34092 * 119.86938 * 0.02562 * 13 12 11 15 15 C 1.40672 * 120.59245 * 180.02562 * 14 13 12 16 16 H 1.07993 * 120.00339 * 171.86329 * 15 14 13 17 17 C 1.40139 * 119.99516 * 351.86557 * 15 14 13 18 18 N 1.30718 * 120.00033 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99955 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47148 * 60.00302 * 19 17 15 21 21 H 1.48498 * 109.46987 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47386 * 300.00153 * 19 17 15 23 23 C 1.40095 * 119.76506 * 0.28109 * 8 6 4 24 24 F 1.35095 * 120.06297 * 179.70234 * 23 8 6 25 25 C 1.38112 * 119.87557 * 359.46356 * 23 8 6 26 26 F 1.35099 * 119.93779 * 180.27690 * 25 23 8 27 27 H 1.09000 * 109.47261 * 59.99783 * 1 2 3 28 28 H 1.08996 * 109.46835 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47098 * 299.99680 * 1 2 3 30 30 H 1.08001 * 119.38318 * 180.02562 * 11 10 9 31 31 H 1.08000 * 119.42485 * 179.74094 * 12 11 10 32 32 H 0.96998 * 119.99670 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2105 0.0000 4 6 2.3604 1.8279 1.2060 5 9 2.0516 1.2230 2.3740 6 6 2.9869 3.0587 1.2118 7 9 3.2914 3.6575 2.3839 8 6 3.3060 3.6850 0.0000 9 6 3.9754 4.9988 0.0000 10 7 3.4440 6.0291 0.6540 11 6 4.0515 7.1997 0.6465 12 6 5.2484 7.3866 -0.0355 13 7 5.8154 6.4014 -0.6973 14 6 5.2362 5.1923 -0.7207 15 6 5.8295 4.1277 -1.4232 16 1 5.4291 3.1291 -1.3296 17 6 6.9404 4.3631 -2.2445 18 7 7.4248 5.5718 -2.3581 19 14 7.7289 2.9494 -3.1768 20 1 6.7294 2.3408 -4.0910 21 1 8.8777 3.4582 -3.9683 22 1 8.2059 1.9256 -2.2127 23 6 2.9820 3.0611 -1.2118 24 9 3.2816 3.6625 -2.3839 25 6 2.3603 1.8279 -1.2060 26 9 2.0524 1.2226 -2.3739 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.6113 8.0286 1.1810 31 1 5.7186 8.3588 -0.0256 32 1 8.1935 5.7347 -2.9269 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242730673.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:43 Heat of formation + Delta-G solvation = -156.228768 kcal Electronic energy + Delta-G solvation = -28238.598721 eV Core-core repulsion = 23471.580606 eV Total energy + Delta-G solvation = -4767.018115 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.74999 -50.68282 -49.78136 -49.73895 -40.95474 -40.43678 -38.35971 -36.14365 -34.28150 -32.97148 -31.12781 -30.57776 -28.43177 -27.78086 -25.38887 -24.42864 -23.82908 -23.04745 -19.95688 -19.93758 -19.70445 -19.36337 -18.35000 -17.88411 -17.76520 -17.73663 -17.08700 -17.03189 -16.89026 -16.75160 -16.50089 -16.05332 -15.99454 -15.93711 -15.59262 -15.45371 -14.81837 -14.69160 -14.33562 -14.16966 -13.45297 -13.36578 -13.34998 -13.05934 -12.87118 -12.61689 -12.39828 -12.09756 -11.81809 -11.65166 -11.40069 -11.13809 -10.31526 -9.89678 -9.62263 -9.36982 -8.57112 -6.82306 -0.85347 -0.69303 0.42877 1.00653 1.34233 1.46769 1.49540 1.56652 1.80440 2.09566 2.43086 2.51590 2.65527 2.72642 3.08054 3.16562 3.63785 3.70293 3.93217 3.96968 4.11146 4.15885 4.36315 4.39206 4.43053 4.60736 4.65801 4.71797 4.81810 4.95516 5.03442 5.18422 5.65096 5.91103 5.96820 6.28059 6.53970 7.16294 7.75540 8.09340 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.012383 B = 0.006001 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.660390 B = 4664.710696 C = 6022.822434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.320 6.320 3 C 0.084 3.916 4 C 0.078 3.922 5 F -0.107 7.107 6 C 0.101 3.899 7 F -0.115 7.115 8 C 0.000 4.000 9 C -0.084 4.084 10 N -0.407 5.407 11 C -0.121 4.121 12 C 0.097 3.903 13 N -0.486 5.486 14 C 0.201 3.799 15 C -0.394 4.394 16 H 0.093 0.907 17 C 0.025 3.975 18 N -0.723 5.723 19 Si 0.976 3.024 20 H -0.254 1.254 21 H -0.256 1.256 22 H -0.252 1.252 23 C 0.104 3.896 24 F -0.110 7.110 25 C 0.077 3.923 26 F -0.107 7.107 27 H 0.060 0.940 28 H 0.133 0.867 29 H 0.060 0.940 30 H 0.166 0.834 31 H 0.166 0.834 32 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.968 -8.295 0.983 11.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.236 6.236 3 C 0.037 3.963 4 C 0.057 3.943 5 F -0.086 7.086 6 C 0.080 3.920 7 F -0.093 7.093 8 C -0.004 4.004 9 C -0.229 4.229 10 N -0.119 5.119 11 C -0.284 4.284 12 C -0.075 4.075 13 N -0.203 5.203 14 C 0.077 3.923 15 C -0.422 4.422 16 H 0.111 0.889 17 C -0.201 4.201 18 N -0.342 5.342 19 Si 0.795 3.205 20 H -0.178 1.178 21 H -0.179 1.179 22 H -0.176 1.176 23 C 0.082 3.918 24 F -0.088 7.088 25 C 0.055 3.945 26 F -0.086 7.086 27 H 0.078 0.922 28 H 0.151 0.849 29 H 0.079 0.921 30 H 0.183 0.817 31 H 0.184 0.816 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.692 -8.317 0.854 11.361 hybrid contribution 0.305 0.253 -0.233 0.459 sum -7.387 -8.064 0.622 10.954 Atomic orbital electron populations 1.23555 0.75375 1.06381 1.02128 1.86107 1.23042 1.20695 1.93804 1.17642 1.01845 0.88865 0.87949 1.17170 1.03975 0.90865 0.82303 1.91548 1.90828 1.82119 1.44069 1.17183 1.02095 0.91059 0.81710 1.91532 1.90803 1.83052 1.43954 1.17984 0.98062 0.94574 0.89742 1.20669 0.98381 0.92384 1.11491 1.67748 1.31646 0.99797 1.12695 1.22997 0.99035 0.95863 1.10523 1.24045 0.93096 0.99219 0.91101 1.69537 1.31464 0.99772 1.19525 1.20583 0.88741 0.92181 0.90755 1.19908 1.09065 0.94937 1.18300 0.88905 1.27081 0.96407 0.99681 0.96973 1.70061 1.16504 1.22827 1.24768 0.85306 0.78711 0.77698 0.78833 1.17810 1.17921 1.17571 1.17248 1.01090 0.91549 0.81906 1.91589 1.90602 1.82751 1.43822 1.17213 1.04152 0.90726 0.82373 1.91547 1.90841 1.82037 1.44131 0.92152 0.84867 0.92093 0.81693 0.81643 0.89450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 11.13 113.37 1.26 1.58 16 2 O -0.32 -8.38 10.12 -91.95 -0.93 -9.31 16 3 C 0.08 2.56 5.74 22.68 0.13 2.69 16 4 C 0.08 2.54 7.30 22.44 0.16 2.70 16 5 F -0.11 -3.28 17.01 44.97 0.76 -2.51 16 6 C 0.10 3.90 7.28 22.69 0.17 4.06 16 7 F -0.12 -4.73 16.58 44.97 0.75 -3.98 16 8 C 0.00 0.00 5.02 -19.95 -0.10 -0.10 16 9 C -0.08 -4.14 5.90 43.54 0.26 -3.88 16 10 N -0.41 -19.57 10.25 -178.83 -1.83 -21.40 16 11 C -0.12 -5.30 11.17 84.87 0.95 -4.35 16 12 C 0.10 4.38 11.17 84.93 0.95 5.33 16 13 N -0.49 -25.58 8.12 -184.13 -1.50 -27.07 16 14 C 0.20 10.65 6.45 41.55 0.27 10.91 16 15 C -0.39 -19.81 7.33 23.33 0.17 -19.64 16 16 H 0.09 4.43 5.99 -2.91 -0.02 4.41 16 17 C 0.03 1.18 5.50 85.32 0.47 1.65 16 18 N -0.72 -35.39 11.54 21.86 0.25 -35.14 16 19 Si 0.98 34.89 29.56 68.60 2.03 36.92 16 20 H -0.25 -8.95 7.11 99.48 0.71 -8.24 16 21 H -0.26 -8.44 7.11 99.48 0.71 -7.74 16 22 H -0.25 -8.72 7.11 99.48 0.71 -8.01 16 23 C 0.10 4.10 5.89 22.69 0.13 4.24 16 24 F -0.11 -4.77 15.00 44.97 0.67 -4.09 16 25 C 0.08 2.54 7.30 22.44 0.16 2.71 16 26 F -0.11 -3.39 17.01 44.97 0.76 -2.63 16 27 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.17 5.87 8.06 -2.91 -0.02 5.84 16 31 H 0.17 6.08 8.06 -2.91 -0.02 6.06 16 32 H 0.29 12.78 8.29 -92.71 -0.77 12.01 16 Total: -1.00 -60.78 308.50 7.18 -53.60 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: 1.23 Total: 7.71 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 4.98 Total: 7.90 kcal Atomic # 7 Polarization: -80.53 SS G_CDS: -3.08 Total: -83.61 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: -0.93 Total: -9.31 kcal Atomic # 9 Polarization: -16.17 SS G_CDS: 2.95 Total: -13.22 kcal Atomic # 14 Polarization: 34.89 SS G_CDS: 2.03 Total: 36.92 kcal Total: -60.78 7.18 -53.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242730673.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.627 kcal (2) G-P(sol) polarization free energy of solvation -60.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds