Wall clock time and date at job start Tue Mar 31 2020 15:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35920 * 116.99873 * 2 1 4 4 C 1.38957 * 119.91286 * 89.99938 * 3 2 1 5 5 F 1.35097 * 119.95435 * 0.03880 * 4 3 2 6 6 C 1.38248 * 120.08565 * 180.02562 * 4 3 2 7 7 F 1.35105 * 120.04178 * 180.02562 * 6 4 3 8 8 C 1.39701 * 119.91744 * 359.97438 * 6 4 3 9 9 C 1.48086 * 120.09351 * 180.02562 * 8 6 4 10 10 C 1.40169 * 119.99996 * 132.57341 * 9 8 6 11 11 N 1.32132 * 120.28410 * 180.27697 * 10 9 8 12 12 C 1.31920 * 120.30073 * 359.48451 * 11 10 9 13 13 C 1.40803 * 119.98705 * 0.51602 * 12 11 10 14 14 C 1.41293 * 120.14444 * 179.72475 * 13 12 11 15 15 H 1.08000 * 119.99804 * 7.06299 * 14 13 12 16 16 C 1.40030 * 120.00298 * 187.06996 * 14 13 12 17 17 N 1.30744 * 120.00187 * 7.13026 * 16 14 13 18 18 Si 1.86802 * 120.00139 * 187.12858 * 16 14 13 19 19 H 1.48499 * 109.46963 * 60.00179 * 18 16 14 20 20 H 1.48498 * 109.47283 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47359 * 300.00117 * 18 16 14 22 22 N 1.32593 * 119.99561 * 312.59572 * 9 8 6 23 23 C 1.39708 * 119.81493 * 0.27496 * 8 6 4 24 24 F 1.35106 * 120.04022 * 179.72811 * 23 8 6 25 25 C 1.38244 * 119.91165 * 359.44539 * 23 8 6 26 26 F 1.35100 * 119.95752 * 180.24943 * 25 23 8 27 27 H 1.08999 * 109.47147 * 300.00048 * 1 2 3 28 28 H 1.08996 * 109.46927 * 60.00566 * 1 2 3 29 29 H 1.08998 * 109.47118 * 180.02562 * 1 2 3 30 30 H 1.08003 * 119.85390 * 359.97438 * 10 9 8 31 31 H 1.07995 * 120.00819 * 180.27641 * 12 11 10 32 32 H 0.96998 * 120.00074 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 2.3606 1.8285 1.2045 5 9 2.0534 1.2239 2.3729 6 6 2.9878 3.0606 1.2086 7 9 3.2937 3.6599 2.3802 8 6 3.3057 3.6846 -0.0001 9 6 3.9780 5.0041 -0.0002 10 6 5.0927 5.2227 -0.8215 11 7 5.7001 6.3961 -0.8219 12 6 5.2569 7.3753 -0.0571 13 6 4.1382 7.1690 0.7726 14 6 3.6642 8.2137 1.5974 15 1 4.0857 9.2042 1.5101 16 6 2.6480 7.9648 2.5282 17 7 2.2347 6.7415 2.7334 18 14 1.8830 9.3806 3.4768 19 1 1.2697 10.3405 2.5242 20 1 0.8386 8.8557 4.3927 21 1 2.9330 10.0710 4.2680 22 7 3.5257 5.9785 0.7770 23 6 2.9830 3.0628 -1.2089 24 9 3.2835 3.6648 -2.3805 25 6 2.3612 1.8282 -1.2045 26 9 2.0532 1.2238 -2.3728 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 5.4595 4.4270 -1.4530 31 1 5.7543 8.3339 -0.0645 32 1 1.5305 6.5692 3.3778 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242731703.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:48 Heat of formation + Delta-G solvation = -138.651230 kcal Electronic energy + Delta-G solvation = -27883.030878 eV Core-core repulsion = 23116.774982 eV Total energy + Delta-G solvation = -4766.255896 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.52014 -49.34385 -48.56199 -48.29297 -39.71943 -39.08186 -37.21708 -34.22031 -32.70116 -31.27327 -29.84846 -29.23447 -27.25108 -26.14752 -23.99538 -23.18297 -22.24124 -21.46069 -18.74979 -18.70890 -18.16496 -17.59067 -16.96550 -16.62785 -16.44228 -16.02722 -15.82027 -15.63061 -15.46149 -15.39306 -15.03182 -14.78768 -14.64776 -14.62505 -14.54242 -14.12798 -13.23707 -13.18643 -13.06180 -12.54909 -12.12524 -11.91535 -11.75249 -11.54784 -11.42665 -11.21184 -10.87901 -10.53519 -10.44536 -10.02398 -9.75836 -9.52366 -8.81743 -8.60080 -7.93534 -7.65527 -6.73723 -4.84761 0.35095 0.57378 2.12492 2.66224 2.84820 2.95031 2.96428 3.05274 3.09934 3.53833 3.73940 3.77305 3.98875 4.31481 4.40192 4.52146 4.92541 5.02356 5.03811 5.22990 5.26366 5.37190 5.43211 5.63892 5.75600 5.91118 6.11670 6.24531 6.37874 6.67557 6.81679 6.89411 6.98460 7.40361 7.83957 8.19155 8.44976 8.99531 9.51243 9.96647 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.014278 B = 0.004834 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.620067 B = 5791.340547 C = 7027.934334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.312 6.312 3 C 0.074 3.926 4 C 0.060 3.940 5 F -0.111 7.111 6 C 0.142 3.858 7 F -0.082 7.082 8 C -0.026 4.026 9 C 0.119 3.881 10 C -0.088 4.088 11 N -0.425 5.425 12 C -0.048 4.048 13 C 0.206 3.794 14 C -0.406 4.406 15 H 0.094 0.906 16 C 0.066 3.934 17 N -0.703 5.703 18 Si 0.915 3.085 19 H -0.262 1.262 20 H -0.275 1.275 21 H -0.262 1.262 22 N -0.428 5.428 23 C 0.115 3.885 24 F -0.103 7.103 25 C 0.061 3.939 26 F -0.112 7.112 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.103 0.897 30 H 0.130 0.870 31 H 0.139 0.861 32 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.015 -9.231 -1.816 10.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.228 6.228 3 C 0.027 3.973 4 C 0.039 3.961 5 F -0.089 7.089 6 C 0.120 3.880 7 F -0.059 7.059 8 C -0.030 4.030 9 C -0.028 4.028 10 C -0.247 4.247 11 N -0.136 5.136 12 C -0.219 4.219 13 C 0.080 3.920 14 C -0.437 4.437 15 H 0.113 0.887 16 C -0.162 4.162 17 N -0.323 5.323 18 Si 0.738 3.262 19 H -0.186 1.186 20 H -0.200 1.200 21 H -0.186 1.186 22 N -0.145 5.145 23 C 0.093 3.907 24 F -0.081 7.081 25 C 0.040 3.960 26 F -0.090 7.090 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.121 0.879 30 H 0.148 0.852 31 H 0.157 0.843 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.094 -9.542 -1.656 10.942 hybrid contribution -0.598 0.659 0.461 1.002 sum -5.692 -8.883 -1.195 10.617 Atomic orbital electron populations 1.23205 0.77659 1.04115 1.01533 1.86119 1.20912 1.21867 1.93928 1.17813 1.01838 0.88698 0.88909 1.17446 1.04814 0.91916 0.81957 1.91546 1.90961 1.82258 1.44147 1.17069 0.98402 0.89507 0.83019 1.91717 1.89597 1.82092 1.42532 1.18464 0.99562 0.95731 0.89214 1.19961 0.94492 0.91880 0.96512 1.22427 0.99522 0.96570 1.06150 1.67721 1.28005 0.99961 1.17889 1.23311 0.99222 0.98274 1.01135 1.19309 0.89747 0.90771 0.92173 1.19629 1.14752 0.95993 1.13289 0.88748 1.26140 0.96290 0.96811 0.96946 1.69997 1.18854 1.20364 1.23090 0.86249 0.79341 0.81095 0.79525 1.18626 1.20001 1.18620 1.69571 1.28406 0.99341 1.17217 1.16979 1.01045 0.90546 0.82161 1.91602 1.90591 1.82362 1.43561 1.17264 1.05168 0.91633 0.81929 1.91542 1.91032 1.82320 1.44136 0.92691 0.92773 0.87861 0.85229 0.84346 0.90753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.13 101.05 1.12 1.40 16 2 O -0.31 -4.21 10.12 -19.49 -0.20 -4.41 16 3 C 0.07 1.10 5.73 -39.05 -0.22 0.88 16 4 C 0.06 0.97 7.30 -39.31 -0.29 0.68 16 5 F -0.11 -1.77 17.01 2.25 0.04 -1.73 16 6 C 0.14 2.68 7.24 -39.03 -0.28 2.39 16 7 F -0.08 -1.76 16.28 2.25 0.04 -1.72 16 8 C -0.03 -0.51 5.64 -104.76 -0.59 -1.10 16 9 C 0.12 2.78 5.98 -82.77 -0.49 2.29 16 10 C -0.09 -2.01 10.02 -16.70 -0.17 -2.17 16 11 N -0.42 -10.18 10.47 -12.03 -0.13 -10.31 16 12 C -0.05 -1.16 10.97 -16.54 -0.18 -1.34 16 13 C 0.21 5.27 6.52 -84.84 -0.55 4.72 16 14 C -0.41 -9.87 9.15 -37.75 -0.35 -10.21 16 15 H 0.09 2.08 7.86 -52.49 -0.41 1.67 16 16 C 0.07 1.53 5.47 -17.34 -0.09 1.44 16 17 N -0.70 -17.21 11.58 55.55 0.64 -16.56 16 18 Si 0.91 17.08 29.57 -169.99 -5.03 12.06 16 19 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 20 H -0.28 -5.07 7.11 56.52 0.40 -4.67 16 21 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 22 N -0.43 -11.03 7.50 -7.52 -0.06 -11.09 16 23 C 0.11 1.97 7.13 -39.03 -0.28 1.70 16 24 F -0.10 -1.84 15.60 2.25 0.04 -1.80 16 25 C 0.06 0.94 7.30 -39.31 -0.29 0.65 16 26 F -0.11 -1.65 17.01 2.25 0.04 -1.61 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.13 2.65 7.59 -52.48 -0.40 2.25 16 31 H 0.14 2.94 8.06 -52.49 -0.42 2.52 16 32 H 0.28 6.29 8.29 -40.82 -0.34 5.95 16 LS Contribution 312.27 15.07 4.71 4.71 Total: -1.00 -27.61 312.27 -4.20 -31.82 By element: Atomic # 1 Polarization: 0.96 SS G_CDS: -1.64 Total: -0.68 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -2.66 Total: 1.33 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.46 Total: -37.96 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: -0.20 Total: -4.41 kcal Atomic # 9 Polarization: -7.01 SS G_CDS: 0.15 Total: -6.87 kcal Atomic # 14 Polarization: 17.08 SS G_CDS: -5.03 Total: 12.06 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.61 -4.20 -31.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242731703.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.835 kcal (2) G-P(sol) polarization free energy of solvation -27.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds