Wall clock time and date at job start Tue Mar 31 2020 15:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30701 * 1 3 3 Si 1.86804 * 120.00014 * 2 1 4 4 H 1.48500 * 109.47142 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47180 * 300.00402 * 3 2 1 6 6 H 1.48497 * 109.46873 * 60.00224 * 3 2 1 7 7 C 1.40146 * 119.99971 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00278 * 179.97438 * 7 2 1 9 9 C 1.40725 * 120.00087 * 0.02562 * 7 2 1 10 10 N 1.33979 * 120.29184 * 355.64765 * 9 7 2 11 11 C 1.31606 * 119.90457 * 180.02562 * 10 9 7 12 12 C 1.39204 * 120.51873 * 0.02562 * 11 10 9 13 13 N 1.31984 * 120.60577 * 359.97438 * 12 11 10 14 14 C 1.32934 * 120.06808 * 0.02562 * 13 12 11 15 15 C 1.47628 * 120.25264 * 179.97438 * 14 13 12 16 16 C 1.39814 * 120.08357 * 45.48483 * 15 14 13 17 17 C 1.37926 * 119.91819 * 179.74349 * 16 15 14 18 18 F 1.35105 * 119.95606 * 180.29357 * 17 16 15 19 19 C 1.39138 * 120.08114 * 0.55336 * 17 16 15 20 20 O 1.35855 * 119.91541 * 179.72167 * 19 17 16 21 21 C 1.42903 * 116.99922 * 269.97045 * 20 19 17 22 22 F 1.39895 * 109.47488 * 300.00603 * 21 20 19 23 23 F 1.39908 * 109.46842 * 60.00790 * 21 20 19 24 24 C 1.39134 * 120.15931 * 359.69400 * 19 17 16 25 25 F 1.35098 * 119.95482 * 179.97438 * 24 19 17 26 26 C 1.37928 * 120.08315 * 0.02842 * 24 19 17 27 27 H 0.97003 * 119.99907 * 359.97438 * 1 2 3 28 28 H 1.08004 * 119.73554 * 179.72865 * 11 10 9 29 29 H 1.08007 * 119.69736 * 180.02562 * 12 11 10 30 30 H 1.08009 * 120.03779 * 0.02562 * 16 15 14 31 31 H 1.09002 * 109.47087 * 180.02562 * 21 20 19 32 32 H 1.08002 * 120.03887 * 180.02562 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6178 0.0000 4 1 3.7010 1.3464 0.0006 5 1 1.8822 2.3965 -1.2124 6 1 1.8823 2.3964 1.2125 7 6 2.0077 -1.2137 -0.0005 8 1 3.0878 -1.2138 -0.0010 9 6 1.3041 -2.4324 -0.0016 10 7 -0.0328 -2.4410 0.0856 11 6 -0.6831 -3.5852 0.0845 12 6 0.0073 -4.7905 -0.0064 13 7 1.3242 -4.8058 -0.0932 14 6 2.0049 -3.6639 -0.0941 15 6 3.4779 -3.6763 -0.1905 16 6 4.1121 -4.4969 -1.1282 17 6 5.4883 -4.5018 -1.2189 18 9 6.1016 -5.2901 -2.1287 19 6 6.2460 -3.7000 -0.3710 20 8 7.6016 -3.7117 -0.4595 21 6 8.2964 -4.6622 0.3504 22 9 8.0097 -4.4241 1.6988 23 9 7.8863 -5.9552 0.0076 24 6 5.6186 -2.8859 0.5668 25 9 6.3583 -2.1094 1.3884 26 6 4.2425 -2.8715 0.6594 27 1 -0.4850 0.8401 0.0004 28 1 -1.7605 -3.5891 0.1594 29 1 -0.5398 -5.7218 -0.0066 30 1 3.5247 -5.1229 -1.7837 31 1 9.3694 -4.5652 0.1848 32 1 3.7563 -2.2390 1.3874 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243490314.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:34 Heat of formation + Delta-G solvation = -167.814311 kcal Electronic energy + Delta-G solvation = -27676.920286 eV Core-core repulsion = 22909.399784 eV Total energy + Delta-G solvation = -4767.520502 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.12927 -48.76010 -48.66135 -47.20345 -39.63535 -38.88453 -37.11849 -34.41851 -32.49262 -31.41633 -30.11254 -28.84119 -26.55204 -25.81095 -23.56806 -22.81322 -22.08163 -21.18288 -19.03200 -18.27204 -18.00957 -17.84998 -17.62959 -16.94559 -16.22797 -15.95767 -15.45883 -15.28739 -15.11111 -15.05001 -15.00049 -14.40684 -14.27558 -14.04589 -13.57980 -13.39677 -13.26010 -13.10190 -13.02830 -12.58180 -12.27734 -12.17321 -11.72157 -11.67918 -11.54217 -11.37894 -10.92973 -10.71367 -10.38377 -10.12285 -9.82025 -9.42539 -8.72022 -8.45065 -7.86503 -7.68412 -6.82934 -5.00498 0.84178 1.31284 2.21189 2.67085 2.89451 2.93228 2.95056 3.01316 3.55595 3.64538 3.73431 3.97470 4.36084 4.45741 4.58729 4.71946 4.90470 5.13851 5.46742 5.48185 5.56693 5.68714 5.81893 5.99004 6.05124 6.29797 6.32493 6.54982 6.61692 6.64682 6.73169 6.93476 7.19373 7.36789 7.73427 8.06722 8.33097 8.92171 9.52275 9.79376 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.013693 B = 0.004778 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.389193 B = 5858.818538 C = 7211.956139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.693 5.693 2 C 0.063 3.937 3 Si 0.909 3.091 4 H -0.252 1.252 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.396 4.396 8 H 0.104 0.896 9 C 0.221 3.779 10 N -0.447 5.447 11 C 0.098 3.902 12 C -0.111 4.111 13 N -0.400 5.400 14 C -0.058 4.058 15 C 0.107 3.893 16 C -0.151 4.151 17 C 0.132 3.868 18 F -0.126 7.126 19 C -0.038 4.038 20 O -0.313 6.313 21 C 0.398 3.602 22 F -0.202 7.202 23 F -0.202 7.202 24 C 0.133 3.867 25 F -0.124 7.124 26 C -0.151 4.151 27 H 0.283 0.717 28 H 0.135 0.865 29 H 0.133 0.867 30 H 0.147 0.853 31 H 0.174 0.826 32 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.714 -2.936 0.118 10.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.311 5.311 2 C -0.166 4.166 3 Si 0.732 3.268 4 H -0.175 1.175 5 H -0.192 1.192 6 H -0.191 1.191 7 C -0.425 4.425 8 H 0.122 0.878 9 C 0.098 3.902 10 N -0.163 5.163 11 C -0.075 4.075 12 C -0.275 4.275 13 N -0.112 5.112 14 C -0.202 4.202 15 C 0.105 3.895 16 C -0.171 4.171 17 C 0.112 3.888 18 F -0.105 7.105 19 C -0.083 4.083 20 O -0.233 6.233 21 C 0.309 3.691 22 F -0.183 7.183 23 F -0.184 7.184 24 C 0.113 3.887 25 F -0.102 7.102 26 C -0.171 4.171 27 H 0.094 0.906 28 H 0.153 0.847 29 H 0.151 0.849 30 H 0.164 0.836 31 H 0.190 0.810 32 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 9.677 -2.643 0.032 10.032 hybrid contribution 0.281 0.410 0.121 0.511 sum 9.959 -2.233 0.153 10.207 Atomic orbital electron populations 1.70054 1.07578 1.29170 1.24327 1.26267 0.95081 1.01895 0.93401 0.86185 0.81321 0.80093 0.79241 1.17495 1.19185 1.19138 1.20118 0.95611 0.89136 1.37596 0.87809 1.19157 0.89043 0.92014 0.90008 1.69594 1.07183 1.24919 1.14618 1.23647 1.00271 0.90213 0.93380 1.22621 0.90447 0.98079 1.16341 1.67676 1.08730 1.29326 1.05469 1.19751 0.90800 0.90796 1.18886 1.17994 0.91813 0.89868 0.89829 1.21250 0.91010 1.02901 1.01905 1.17434 0.90503 0.91185 0.89651 1.91502 1.83321 1.71644 1.63984 1.18288 0.82107 1.05262 1.02681 1.86728 1.16311 1.56452 1.63761 1.23686 0.97144 0.74282 0.74030 1.93094 1.95265 1.93793 1.36194 1.93095 1.92675 1.40941 1.91687 1.17414 0.89143 0.92539 0.89594 1.91509 1.76780 1.72055 1.69886 1.21446 0.90120 1.02986 1.02506 0.90590 0.84747 0.84924 0.83568 0.80966 0.82286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -16.35 11.49 55.56 0.64 -15.72 16 2 C 0.06 1.42 5.50 -17.32 -0.10 1.32 16 3 Si 0.91 16.70 29.56 -169.99 -5.03 11.68 16 4 H -0.25 -4.60 7.11 56.52 0.40 -4.20 16 5 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 6 H -0.27 -4.81 7.11 56.52 0.40 -4.41 16 7 C -0.40 -9.31 7.91 -37.93 -0.30 -9.61 16 8 H 0.10 2.28 4.77 -52.48 -0.25 2.03 16 9 C 0.22 5.45 6.53 -84.55 -0.55 4.90 16 10 N -0.45 -11.12 8.05 -10.72 -0.09 -11.20 16 11 C 0.10 2.12 11.22 -17.29 -0.19 1.93 16 12 C -0.11 -2.33 11.22 -17.13 -0.19 -2.52 16 13 N -0.40 -9.06 10.32 -8.99 -0.09 -9.16 16 14 C -0.06 -1.34 6.39 -82.12 -0.52 -1.87 16 15 C 0.11 2.19 5.31 -104.89 -0.56 1.63 16 16 C -0.15 -2.82 9.66 -39.11 -0.38 -3.19 16 17 C 0.13 2.35 7.01 -39.36 -0.28 2.07 16 18 F -0.13 -2.16 16.76 2.25 0.04 -2.12 16 19 C -0.04 -0.67 5.35 -38.91 -0.21 -0.88 16 20 O -0.31 -4.88 10.06 -19.29 -0.19 -5.07 16 21 C 0.40 4.95 6.35 101.05 0.64 5.59 16 22 F -0.20 -2.88 16.62 2.25 0.04 -2.84 16 23 F -0.20 -2.87 16.63 2.25 0.04 -2.83 16 24 C 0.13 2.41 7.01 -39.36 -0.28 2.13 16 25 F -0.12 -2.18 16.75 2.25 0.04 -2.15 16 26 C -0.15 -2.88 7.47 -39.11 -0.29 -3.17 16 27 H 0.28 5.96 8.29 -40.82 -0.34 5.62 16 28 H 0.14 2.43 8.06 -52.48 -0.42 2.01 16 29 H 0.13 2.34 8.06 -52.48 -0.42 1.92 16 30 H 0.15 2.64 8.06 -52.48 -0.42 2.22 16 31 H 0.17 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.16 3.03 6.74 -52.49 -0.35 2.68 16 LS Contribution 306.61 15.07 4.62 4.62 Total: -1.00 -27.65 306.61 -4.62 -32.27 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -1.43 Total: 4.18 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -3.20 Total: -1.67 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 0.46 Total: -36.08 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: -0.19 Total: -5.07 kcal Atomic # 9 Polarization: -10.09 SS G_CDS: 0.15 Total: -9.94 kcal Atomic # 14 Polarization: 16.70 SS G_CDS: -5.03 Total: 11.68 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -27.65 -4.62 -32.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243490314.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.540 kcal (2) G-P(sol) polarization free energy of solvation -27.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds