Wall clock time and date at job start Tue Mar 31 2020 15:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30701 * 1 3 3 Si 1.86804 * 120.00014 * 2 1 4 4 H 1.48500 * 109.47142 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47180 * 300.00402 * 3 2 1 6 6 H 1.48497 * 109.46873 * 60.00224 * 3 2 1 7 7 C 1.40146 * 119.99971 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00278 * 179.97438 * 7 2 1 9 9 C 1.40725 * 120.00087 * 0.02562 * 7 2 1 10 10 N 1.33979 * 120.29184 * 355.64765 * 9 7 2 11 11 C 1.31606 * 119.90457 * 180.02562 * 10 9 7 12 12 C 1.39204 * 120.51873 * 0.02562 * 11 10 9 13 13 N 1.31984 * 120.60577 * 359.97438 * 12 11 10 14 14 C 1.32934 * 120.06808 * 0.02562 * 13 12 11 15 15 C 1.47628 * 120.25264 * 179.97438 * 14 13 12 16 16 C 1.39814 * 120.08357 * 45.48483 * 15 14 13 17 17 C 1.37926 * 119.91819 * 179.74349 * 16 15 14 18 18 F 1.35105 * 119.95606 * 180.29357 * 17 16 15 19 19 C 1.39138 * 120.08114 * 0.55336 * 17 16 15 20 20 O 1.35855 * 119.91541 * 179.72167 * 19 17 16 21 21 C 1.42903 * 116.99922 * 269.97045 * 20 19 17 22 22 F 1.39895 * 109.47488 * 300.00603 * 21 20 19 23 23 F 1.39908 * 109.46842 * 60.00790 * 21 20 19 24 24 C 1.39134 * 120.15931 * 359.69400 * 19 17 16 25 25 F 1.35098 * 119.95482 * 179.97438 * 24 19 17 26 26 C 1.37928 * 120.08315 * 0.02842 * 24 19 17 27 27 H 0.97003 * 119.99907 * 359.97438 * 1 2 3 28 28 H 1.08004 * 119.73554 * 179.72865 * 11 10 9 29 29 H 1.08007 * 119.69736 * 180.02562 * 12 11 10 30 30 H 1.08009 * 120.03779 * 0.02562 * 16 15 14 31 31 H 1.09002 * 109.47087 * 180.02562 * 21 20 19 32 32 H 1.08002 * 120.03887 * 180.02562 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6178 0.0000 4 1 3.7010 1.3464 0.0006 5 1 1.8822 2.3965 -1.2124 6 1 1.8823 2.3964 1.2125 7 6 2.0077 -1.2137 -0.0005 8 1 3.0878 -1.2138 -0.0010 9 6 1.3041 -2.4324 -0.0016 10 7 -0.0328 -2.4410 0.0856 11 6 -0.6831 -3.5852 0.0845 12 6 0.0073 -4.7905 -0.0064 13 7 1.3242 -4.8058 -0.0932 14 6 2.0049 -3.6639 -0.0941 15 6 3.4779 -3.6763 -0.1905 16 6 4.1121 -4.4969 -1.1282 17 6 5.4883 -4.5018 -1.2189 18 9 6.1016 -5.2901 -2.1287 19 6 6.2460 -3.7000 -0.3710 20 8 7.6016 -3.7117 -0.4595 21 6 8.2964 -4.6622 0.3504 22 9 8.0097 -4.4241 1.6988 23 9 7.8863 -5.9552 0.0076 24 6 5.6186 -2.8859 0.5668 25 9 6.3583 -2.1094 1.3884 26 6 4.2425 -2.8715 0.6594 27 1 -0.4850 0.8401 0.0004 28 1 -1.7605 -3.5891 0.1594 29 1 -0.5398 -5.7218 -0.0066 30 1 3.5247 -5.1229 -1.7837 31 1 9.3694 -4.5652 0.1848 32 1 3.7563 -2.2390 1.3874 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243490314.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:33 Heat of formation + Delta-G solvation = -183.399363 kcal Electronic energy + Delta-G solvation = -27677.596105 eV Core-core repulsion = 22909.399784 eV Total energy + Delta-G solvation = -4768.196321 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.27419 -50.16783 -49.98787 -48.27180 -41.23006 -40.32058 -38.52704 -36.10406 -34.17411 -33.04155 -31.59163 -30.36446 -28.18666 -27.02773 -25.07237 -24.32980 -23.72469 -22.72810 -20.28034 -19.65234 -19.34083 -19.10682 -19.08695 -18.30497 -17.81424 -17.26221 -16.91237 -16.82029 -16.66098 -16.51672 -16.45722 -15.88941 -15.73738 -15.13271 -14.93915 -14.68836 -14.66541 -14.50284 -14.37975 -14.04720 -13.77477 -13.41795 -13.29281 -13.14563 -13.03786 -12.86475 -12.37651 -12.16235 -11.94129 -11.78283 -11.56533 -11.10829 -10.27671 -9.91480 -9.53752 -9.35094 -8.50400 -6.74664 -0.60511 -0.16066 0.56192 1.02853 1.38708 1.49006 1.53610 1.71225 2.12958 2.25519 2.50355 2.62644 2.68913 3.17705 3.36487 3.48235 3.63313 3.74699 3.82680 3.99877 4.10321 4.17911 4.22855 4.39769 4.52589 4.70935 4.83725 4.97241 5.01952 5.09733 5.17097 5.34639 5.70618 5.79721 6.02772 6.36404 6.61037 7.21212 7.80665 8.16846 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.013693 B = 0.004778 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.389193 B = 5858.818538 C = 7211.956139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.729 5.729 2 C 0.026 3.974 3 Si 0.976 3.024 4 H -0.250 1.250 5 H -0.262 1.262 6 H -0.260 1.260 7 C -0.419 4.419 8 H 0.111 0.889 9 C 0.194 3.806 10 N -0.482 5.482 11 C 0.089 3.911 12 C -0.111 4.111 13 N -0.415 5.415 14 C -0.068 4.068 15 C 0.086 3.914 16 C -0.145 4.145 17 C 0.132 3.868 18 F -0.120 7.120 19 C -0.025 4.025 20 O -0.320 6.320 21 C 0.392 3.608 22 F -0.213 7.213 23 F -0.213 7.213 24 C 0.131 3.869 25 F -0.120 7.120 26 C -0.148 4.148 27 H 0.290 0.710 28 H 0.166 0.834 29 H 0.167 0.833 30 H 0.149 0.851 31 H 0.237 0.763 32 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.459 -2.964 -0.013 11.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.348 5.348 2 C -0.200 4.200 3 Si 0.795 3.205 4 H -0.173 1.173 5 H -0.187 1.187 6 H -0.184 1.184 7 C -0.448 4.448 8 H 0.129 0.871 9 C 0.071 3.929 10 N -0.199 5.199 11 C -0.083 4.083 12 C -0.275 4.275 13 N -0.128 5.128 14 C -0.212 4.212 15 C 0.084 3.916 16 C -0.165 4.165 17 C 0.112 3.888 18 F -0.098 7.098 19 C -0.070 4.070 20 O -0.240 6.240 21 C 0.305 3.695 22 F -0.195 7.195 23 F -0.195 7.195 24 C 0.111 3.889 25 F -0.098 7.098 26 C -0.168 4.168 27 H 0.101 0.899 28 H 0.183 0.817 29 H 0.185 0.815 30 H 0.167 0.833 31 H 0.253 0.747 32 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 11.420 -2.701 -0.097 11.736 hybrid contribution -0.197 0.269 0.167 0.373 sum 11.224 -2.432 0.070 11.484 Atomic orbital electron populations 1.70111 1.08980 1.30417 1.25335 1.27074 0.95730 1.04689 0.92494 0.85202 0.79889 0.75917 0.79443 1.17312 1.18659 1.18434 1.20398 0.96124 0.89647 1.38632 0.87122 1.19543 0.89477 0.93141 0.90741 1.69553 1.07729 1.26613 1.16003 1.24174 1.01763 0.89806 0.92575 1.23188 0.90225 0.99321 1.14717 1.67750 1.09561 1.29281 1.06202 1.20020 0.92078 0.90505 1.18609 1.17936 0.90877 0.91469 0.91311 1.21219 0.91532 1.02351 1.01401 1.17330 0.90121 0.91436 0.89890 1.91516 1.83103 1.71464 1.63765 1.18308 0.83356 1.03906 1.01439 1.86704 1.14891 1.57715 1.64675 1.24690 0.99090 0.72914 0.72849 1.93075 1.95468 1.93779 1.37170 1.93077 1.92972 1.41721 1.91699 1.17332 0.88727 0.92865 0.89992 1.91516 1.76539 1.71992 1.69797 1.21355 0.90619 1.02578 1.02239 0.89890 0.81738 0.81546 0.83329 0.74698 0.82843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -35.06 11.49 21.86 0.25 -34.81 16 2 C 0.03 1.18 5.50 85.32 0.47 1.65 16 3 Si 0.98 34.16 29.56 68.60 2.03 36.19 16 4 H -0.25 -8.56 7.11 99.48 0.71 -7.85 16 5 H -0.26 -8.88 7.11 99.48 0.71 -8.17 16 6 H -0.26 -8.73 7.11 99.48 0.71 -8.02 16 7 C -0.42 -20.15 7.91 23.34 0.18 -19.96 16 8 H 0.11 4.96 4.77 -2.91 -0.01 4.94 16 9 C 0.19 9.83 6.53 40.35 0.26 10.09 16 10 N -0.48 -24.46 8.05 -187.83 -1.51 -25.97 16 11 C 0.09 3.84 11.22 84.96 0.95 4.79 16 12 C -0.11 -4.59 11.22 84.90 0.95 -3.63 16 13 N -0.42 -18.87 10.32 -182.35 -1.88 -20.75 16 14 C -0.07 -3.21 6.39 42.39 0.27 -2.94 16 15 C 0.09 3.54 5.31 -20.04 -0.11 3.44 16 16 C -0.15 -5.38 9.66 22.58 0.22 -5.16 16 17 C 0.13 4.54 7.01 22.41 0.16 4.69 16 18 F -0.12 -3.90 16.76 44.97 0.75 -3.15 16 19 C -0.02 -0.83 5.35 22.70 0.12 -0.71 16 20 O -0.32 -9.11 10.06 -91.92 -0.92 -10.04 16 21 C 0.39 8.49 6.35 113.37 0.72 9.21 16 22 F -0.21 -5.56 16.62 44.97 0.75 -4.82 16 23 F -0.21 -5.50 16.63 44.97 0.75 -4.75 16 24 C 0.13 4.61 7.01 22.41 0.16 4.76 16 25 F -0.12 -4.07 16.75 44.97 0.75 -3.31 16 26 C -0.15 -5.68 7.47 22.58 0.17 -5.51 16 27 H 0.29 12.42 8.29 -92.71 -0.77 11.65 16 28 H 0.17 5.82 8.06 -2.91 -0.02 5.79 16 29 H 0.17 5.55 8.06 -2.91 -0.02 5.53 16 30 H 0.15 5.35 8.06 -2.91 -0.02 5.33 16 31 H 0.24 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.15 5.99 6.74 -2.91 -0.02 5.97 16 Total: -1.00 -60.19 306.61 6.72 -53.46 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 1.23 Total: 17.21 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: 4.53 Total: 0.73 kcal Atomic # 7 Polarization: -78.39 SS G_CDS: -3.14 Total: -81.53 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -0.92 Total: -10.04 kcal Atomic # 9 Polarization: -19.03 SS G_CDS: 3.00 Total: -16.03 kcal Atomic # 14 Polarization: 34.16 SS G_CDS: 2.03 Total: 36.19 kcal Total: -60.19 6.72 -53.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243490314.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.934 kcal (2) G-P(sol) polarization free energy of solvation -60.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds