Wall clock time and date at job start Tue Mar 31 2020 15:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86800 * 120.00101 * 2 1 4 4 H 1.48509 * 109.47114 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47458 * 119.99331 * 3 2 1 6 6 H 1.48498 * 109.47001 * 239.99810 * 3 2 1 7 7 C 1.40038 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99836 * 357.97332 * 7 2 1 9 9 C 1.41311 * 120.00319 * 177.96989 * 7 2 1 10 10 C 1.40852 * 120.14873 * 179.50763 * 9 7 2 11 11 N 1.31867 * 119.97410 * 179.75516 * 10 9 7 12 12 C 1.32186 * 120.28920 * 0.49878 * 11 10 9 13 13 C 1.40057 * 120.29359 * 359.77205 * 12 11 10 14 14 C 1.48214 * 119.98716 * 179.97438 * 13 12 11 15 15 C 1.39459 * 120.05170 * 184.70770 * 14 13 12 16 16 C 1.38078 * 119.93827 * 179.71774 * 15 14 13 17 17 F 1.35105 * 119.97181 * 180.29516 * 16 15 14 18 18 C 1.38990 * 120.05931 * 0.55698 * 16 15 14 19 19 O 1.35933 * 119.94469 * 179.74179 * 18 16 15 20 20 C 1.42897 * 116.99959 * 269.97533 * 19 18 16 21 21 F 1.39904 * 109.47493 * 300.00313 * 20 19 18 22 22 F 1.39905 * 109.47372 * 60.00139 * 20 19 18 23 23 C 1.38990 * 120.10934 * 359.72006 * 18 16 15 24 24 F 1.35102 * 119.97079 * 180.02562 * 23 18 16 25 25 C 1.38073 * 120.05755 * 359.97438 * 23 18 16 26 26 N 1.32572 * 120.02035 * 359.96201 * 13 12 11 27 27 H 0.97000 * 120.00252 * 174.82880 * 1 2 3 28 28 H 1.08006 * 120.00936 * 0.02562 * 10 9 7 29 29 H 1.08008 * 119.85285 * 179.75506 * 12 11 10 30 30 H 1.07995 * 120.03257 * 359.97438 * 15 14 13 31 31 H 1.08995 * 109.47263 * 180.02562 * 20 19 18 32 32 H 1.08000 * 120.03113 * 179.97438 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 1.2764 2.7465 -0.0006 5 1 3.0950 1.6965 1.2125 6 1 3.0952 1.6963 -1.2125 7 6 2.0076 -1.2128 0.0005 8 1 1.4680 -2.1478 0.0340 9 6 3.4200 -1.2132 -0.0428 10 6 4.1277 -2.4310 -0.0319 11 7 5.4456 -2.4276 -0.0774 12 6 6.1081 -1.2846 -0.1233 13 6 5.4164 -0.0668 -0.1289 14 6 6.1662 1.2107 -0.1799 15 6 5.4853 2.4242 -0.0866 16 6 6.1867 3.6129 -0.1285 17 9 5.5284 4.7888 -0.0322 18 6 7.5688 3.6009 -0.2752 19 8 8.2564 4.7726 -0.3215 20 6 8.4509 5.3602 -1.6095 21 9 9.1637 4.4736 -2.4238 22 9 7.2077 5.6307 -2.1913 23 6 8.2490 2.3929 -0.3742 24 9 9.5925 2.3845 -0.5162 25 6 7.5530 1.2014 -0.3265 26 7 4.0913 -0.0564 -0.0888 27 1 -0.4850 -0.8366 -0.0757 28 1 3.5909 -3.3674 0.0092 29 1 7.1877 -1.2900 -0.1563 30 1 4.4109 2.4342 0.0225 31 1 9.0129 6.2882 -1.5043 32 1 8.0819 0.2630 -0.4039 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243493110.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:55 Heat of formation + Delta-G solvation = -178.494215 kcal Electronic energy + Delta-G solvation = -27602.584102 eV Core-core repulsion = 22834.600485 eV Total energy + Delta-G solvation = -4767.983617 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.36672 -49.10554 -48.97632 -47.41786 -40.09783 -39.30036 -37.58179 -34.48168 -33.15290 -31.85180 -30.55726 -29.29154 -26.47634 -25.98121 -24.06995 -23.41411 -22.18793 -21.18750 -19.37098 -18.85285 -18.52612 -18.13402 -17.89379 -17.22734 -16.68742 -16.25832 -16.08245 -15.67771 -15.57610 -15.37701 -14.98308 -14.74656 -14.26296 -13.89952 -13.87034 -13.77544 -13.63331 -13.38962 -13.34631 -13.05742 -12.61777 -12.49587 -11.99407 -11.92329 -11.64333 -11.40020 -11.32872 -11.02185 -10.14245 -9.97885 -9.67629 -9.35991 -9.14159 -8.88398 -8.07771 -7.99191 -7.47729 -5.18701 0.27898 0.86313 1.92212 2.30330 2.65391 3.27922 3.31822 3.32933 3.41040 3.57511 3.69503 4.04893 4.17123 4.23270 4.33357 4.35138 4.41188 4.72152 4.99616 5.12776 5.16631 5.30744 5.45172 5.57381 5.62903 5.81063 5.99704 6.12596 6.24693 6.37822 6.55923 6.76463 6.99351 7.08443 7.61837 7.76617 8.15386 8.53042 9.00214 9.63703 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.016360 B = 0.004630 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.112551 B = 6046.521133 C = 7420.958094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.041 3.959 3 Si 1.137 2.863 4 H -0.319 1.319 5 H -0.281 1.281 6 H -0.277 1.277 7 C -0.442 4.442 8 H 0.094 0.906 9 C 0.199 3.801 10 C -0.024 4.024 11 N -0.418 5.418 12 C -0.093 4.093 13 C 0.155 3.845 14 C 0.048 3.952 15 C -0.139 4.139 16 C 0.133 3.867 17 F -0.116 7.116 18 C -0.013 4.013 19 O -0.314 6.314 20 C 0.401 3.599 21 F -0.200 7.200 22 F -0.199 7.199 23 C 0.133 3.867 24 F -0.118 7.118 25 C -0.141 4.141 26 N -0.536 5.536 27 H 0.289 0.711 28 H 0.145 0.855 29 H 0.141 0.859 30 H 0.158 0.842 31 H 0.179 0.821 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.079 8.907 -1.604 15.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.183 4.183 3 Si 0.972 3.028 4 H -0.252 1.252 5 H -0.210 1.210 6 H -0.205 1.205 7 C -0.474 4.474 8 H 0.112 0.888 9 C 0.074 3.926 10 C -0.197 4.197 11 N -0.129 5.129 12 C -0.249 4.249 13 C 0.012 3.988 14 C 0.046 3.954 15 C -0.158 4.158 16 C 0.113 3.887 17 F -0.094 7.094 18 C -0.058 4.058 19 O -0.233 6.233 20 C 0.311 3.689 21 F -0.182 7.182 22 F -0.180 7.180 23 C 0.113 3.887 24 F -0.096 7.096 25 C -0.161 4.161 26 N -0.259 5.259 27 H 0.101 0.899 28 H 0.162 0.838 29 H 0.159 0.841 30 H 0.175 0.825 31 H 0.196 0.804 32 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 12.866 10.547 -1.436 16.698 hybrid contribution 0.033 -1.732 -0.345 1.766 sum 12.899 8.815 -1.781 15.725 Atomic orbital electron populations 1.70628 1.08119 1.33374 1.28004 1.27842 0.95364 1.06197 0.88937 0.82366 0.70872 0.70222 0.79363 1.25185 1.21001 1.20512 1.20891 0.89860 0.96920 1.39741 0.88847 1.19371 0.94865 0.87843 0.90503 1.23279 0.89893 0.98085 1.08459 1.67761 1.09442 1.29186 1.06482 1.22487 0.99232 0.87546 1.15681 1.19970 0.90791 0.91447 0.96569 1.18327 0.91266 0.91920 0.93867 1.21819 1.02924 0.89541 1.01490 1.17487 0.87942 0.82253 1.01018 1.91555 1.80378 1.44555 1.92952 1.18394 0.89281 0.84913 1.13201 1.86750 1.73151 1.35441 1.27970 1.23708 0.78604 0.90727 0.75815 1.93104 1.78292 1.72369 1.74429 1.93119 1.45924 1.93940 1.85049 1.17315 0.77829 0.92432 1.01122 1.91545 1.28165 1.97195 1.92730 1.21201 0.93617 0.97539 1.03768 1.67182 1.06365 1.28613 1.23755 0.89886 0.83767 0.84129 0.82465 0.80446 0.82321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.54 13.65 55.55 0.76 -18.78 16 2 C 0.04 1.02 5.52 -17.34 -0.10 0.92 16 3 Si 1.14 26.22 22.22 -169.99 -3.78 22.44 16 4 H -0.32 -7.31 7.11 56.52 0.40 -6.91 16 5 H -0.28 -6.37 6.65 56.52 0.38 -5.99 16 6 H -0.28 -6.30 6.47 56.52 0.37 -5.93 16 7 C -0.44 -10.84 9.59 -37.74 -0.36 -11.20 16 8 H 0.09 2.22 8.06 -52.48 -0.42 1.79 16 9 C 0.20 4.76 6.42 -84.84 -0.54 4.21 16 10 C -0.02 -0.53 10.98 -16.55 -0.18 -0.71 16 11 N -0.42 -8.99 10.47 -12.04 -0.13 -9.11 16 12 C -0.09 -1.85 10.61 -16.72 -0.18 -2.03 16 13 C 0.15 3.22 6.73 -82.77 -0.56 2.66 16 14 C 0.05 0.86 5.87 -104.89 -0.62 0.25 16 15 C -0.14 -2.54 9.44 -39.19 -0.37 -2.91 16 16 C 0.13 2.20 7.02 -39.36 -0.28 1.93 16 17 F -0.12 -1.90 16.75 2.25 0.04 -1.87 16 18 C -0.01 -0.19 5.34 -39.02 -0.21 -0.40 16 19 O -0.31 -4.15 10.07 -19.53 -0.20 -4.35 16 20 C 0.40 4.19 6.35 101.05 0.64 4.83 16 21 F -0.20 -2.42 16.63 2.25 0.04 -2.38 16 22 F -0.20 -2.53 16.63 2.25 0.04 -2.49 16 23 C 0.13 1.93 7.01 -39.36 -0.28 1.65 16 24 F -0.12 -1.63 16.75 2.25 0.04 -1.59 16 25 C -0.14 -2.07 9.39 -39.19 -0.37 -2.44 16 26 N -0.54 -12.62 4.31 -7.51 -0.03 -12.65 16 27 H 0.29 6.81 8.72 -40.82 -0.36 6.46 16 28 H 0.14 2.85 8.06 -52.48 -0.42 2.43 16 29 H 0.14 2.27 6.21 -52.48 -0.33 1.94 16 30 H 0.16 3.16 2.58 -52.49 -0.14 3.03 16 31 H 0.18 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.16 1.94 6.21 -52.49 -0.33 1.62 16 LS Contribution 295.96 15.07 4.46 4.46 Total: -1.00 -27.23 295.96 -3.42 -30.66 By element: Atomic # 1 Polarization: 0.17 SS G_CDS: -1.27 Total: -1.10 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -3.39 Total: -3.23 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: 0.60 Total: -40.55 kcal Atomic # 8 Polarization: -4.15 SS G_CDS: -0.20 Total: -4.35 kcal Atomic # 9 Polarization: -8.48 SS G_CDS: 0.15 Total: -8.33 kcal Atomic # 14 Polarization: 26.22 SS G_CDS: -3.78 Total: 22.44 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.23 -3.42 -30.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243493110.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.838 kcal (2) G-P(sol) polarization free energy of solvation -27.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds