Wall clock time and date at job start Tue Mar 31 2020 15:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86800 * 120.00101 * 2 1 4 4 H 1.48509 * 109.47114 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47458 * 119.99331 * 3 2 1 6 6 H 1.48498 * 109.47001 * 239.99810 * 3 2 1 7 7 C 1.40038 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99836 * 357.97332 * 7 2 1 9 9 C 1.41311 * 120.00319 * 177.96989 * 7 2 1 10 10 C 1.40852 * 120.14873 * 179.50763 * 9 7 2 11 11 N 1.31867 * 119.97410 * 179.75516 * 10 9 7 12 12 C 1.32186 * 120.28920 * 0.49878 * 11 10 9 13 13 C 1.40057 * 120.29359 * 359.77205 * 12 11 10 14 14 C 1.48214 * 119.98716 * 179.97438 * 13 12 11 15 15 C 1.39459 * 120.05170 * 184.70770 * 14 13 12 16 16 C 1.38078 * 119.93827 * 179.71774 * 15 14 13 17 17 F 1.35105 * 119.97181 * 180.29516 * 16 15 14 18 18 C 1.38990 * 120.05931 * 0.55698 * 16 15 14 19 19 O 1.35933 * 119.94469 * 179.74179 * 18 16 15 20 20 C 1.42897 * 116.99959 * 269.97533 * 19 18 16 21 21 F 1.39904 * 109.47493 * 300.00313 * 20 19 18 22 22 F 1.39905 * 109.47372 * 60.00139 * 20 19 18 23 23 C 1.38990 * 120.10934 * 359.72006 * 18 16 15 24 24 F 1.35102 * 119.97079 * 180.02562 * 23 18 16 25 25 C 1.38073 * 120.05755 * 359.97438 * 23 18 16 26 26 N 1.32572 * 120.02035 * 359.96201 * 13 12 11 27 27 H 0.97000 * 120.00252 * 174.82880 * 1 2 3 28 28 H 1.08006 * 120.00936 * 0.02562 * 10 9 7 29 29 H 1.08008 * 119.85285 * 179.75506 * 12 11 10 30 30 H 1.07995 * 120.03257 * 359.97438 * 15 14 13 31 31 H 1.08995 * 109.47263 * 180.02562 * 20 19 18 32 32 H 1.08000 * 120.03113 * 179.97438 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 1.2764 2.7465 -0.0006 5 1 3.0950 1.6965 1.2125 6 1 3.0952 1.6963 -1.2125 7 6 2.0076 -1.2128 0.0005 8 1 1.4680 -2.1478 0.0340 9 6 3.4200 -1.2132 -0.0428 10 6 4.1277 -2.4310 -0.0319 11 7 5.4456 -2.4276 -0.0774 12 6 6.1081 -1.2846 -0.1233 13 6 5.4164 -0.0668 -0.1289 14 6 6.1662 1.2107 -0.1799 15 6 5.4853 2.4242 -0.0866 16 6 6.1867 3.6129 -0.1285 17 9 5.5284 4.7888 -0.0322 18 6 7.5688 3.6009 -0.2752 19 8 8.2564 4.7726 -0.3215 20 6 8.4509 5.3602 -1.6095 21 9 9.1637 4.4736 -2.4238 22 9 7.2077 5.6307 -2.1913 23 6 8.2490 2.3929 -0.3742 24 9 9.5925 2.3845 -0.5162 25 6 7.5530 1.2014 -0.3265 26 7 4.0913 -0.0564 -0.0888 27 1 -0.4850 -0.8366 -0.0757 28 1 3.5909 -3.3674 0.0092 29 1 7.1877 -1.2900 -0.1563 30 1 4.4109 2.4342 0.0225 31 1 9.0129 6.2882 -1.5043 32 1 8.0819 0.2630 -0.4039 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243493110.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:54 Heat of formation + Delta-G solvation = -194.940517 kcal Electronic energy + Delta-G solvation = -27603.297267 eV Core-core repulsion = 22834.600485 eV Total energy + Delta-G solvation = -4768.696783 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.37877 -50.29065 -50.07474 -48.32478 -41.64773 -40.59669 -38.80559 -36.27909 -34.81651 -33.44476 -31.84344 -30.71920 -28.01097 -27.18797 -25.50348 -24.75780 -23.69261 -22.70345 -20.65173 -20.43086 -19.44086 -19.26866 -19.14124 -18.41916 -18.10432 -17.77578 -17.30864 -17.10540 -16.76326 -16.57451 -16.48359 -16.00525 -15.57523 -15.48813 -15.18281 -15.06019 -14.73513 -14.69750 -14.56617 -14.48722 -14.05259 -13.62697 -13.30762 -13.24521 -13.15582 -13.12309 -12.96588 -12.35745 -11.80295 -11.78552 -11.48742 -11.13083 -10.67245 -10.13638 -9.81954 -9.60133 -9.27750 -7.01782 -1.02712 -0.38937 0.36142 0.57643 1.42201 1.51688 1.58146 1.85968 2.04138 2.21743 2.31660 2.54763 2.55975 2.85890 2.99218 3.28918 3.39758 3.58387 3.68114 3.71151 3.83524 3.87124 3.98512 4.03627 4.30952 4.39565 4.60412 4.65764 4.81148 4.95420 5.01267 5.23729 5.32333 5.59767 5.79782 5.99910 6.34139 6.80703 7.27835 7.79183 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.016360 B = 0.004630 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.112551 B = 6046.521133 C = 7420.958094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.020 3.980 3 Si 1.160 2.840 4 H -0.323 1.323 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.474 4.474 8 H 0.089 0.911 9 C 0.190 3.810 10 C -0.035 4.035 11 N -0.423 5.423 12 C -0.074 4.074 13 C 0.144 3.856 14 C 0.027 3.973 15 C -0.153 4.153 16 C 0.123 3.877 17 F -0.119 7.119 18 C 0.001 3.999 19 O -0.320 6.320 20 C 0.395 3.605 21 F -0.209 7.209 22 F -0.213 7.213 23 C 0.138 3.862 24 F -0.108 7.108 25 C -0.115 4.115 26 N -0.556 5.556 27 H 0.291 0.709 28 H 0.161 0.839 29 H 0.187 0.813 30 H 0.136 0.864 31 H 0.240 0.760 32 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.758 9.587 -1.874 19.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.200 4.200 3 Si 0.994 3.006 4 H -0.256 1.256 5 H -0.211 1.211 6 H -0.207 1.207 7 C -0.507 4.507 8 H 0.107 0.893 9 C 0.065 3.935 10 C -0.206 4.206 11 N -0.134 5.134 12 C -0.231 4.231 13 C 0.003 3.997 14 C 0.025 3.975 15 C -0.172 4.172 16 C 0.103 3.897 17 F -0.097 7.097 18 C -0.045 4.045 19 O -0.239 6.239 20 C 0.307 3.693 21 F -0.191 7.191 22 F -0.195 7.195 23 C 0.118 3.882 24 F -0.086 7.086 25 C -0.135 4.135 26 N -0.279 5.279 27 H 0.102 0.898 28 H 0.178 0.822 29 H 0.203 0.797 30 H 0.153 0.847 31 H 0.256 0.744 32 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 16.545 11.209 -1.709 20.058 hybrid contribution -0.751 -1.859 -0.293 2.026 sum 15.794 9.350 -2.002 18.463 Atomic orbital electron populations 1.70628 1.08347 1.33522 1.30513 1.28266 0.95621 1.07401 0.88716 0.82055 0.70160 0.69110 0.79243 1.25628 1.21113 1.20736 1.20862 0.90519 0.96702 1.42588 0.89255 1.19529 0.94894 0.88793 0.90328 1.23470 0.90358 0.98129 1.08599 1.67876 1.09009 1.29903 1.06604 1.23262 1.01228 0.86553 1.12035 1.20474 0.90081 0.93387 0.95785 1.18188 0.92394 0.90371 0.96561 1.21678 1.02124 0.90754 1.02674 1.17437 0.88590 0.81672 1.01975 1.91543 1.80593 1.44510 1.93102 1.18459 0.88760 0.86135 1.11118 1.86740 1.72560 1.34636 1.29973 1.24707 0.78372 0.91982 0.74233 1.93087 1.78323 1.73030 1.74636 1.93096 1.47252 1.93953 1.85227 1.17218 0.78159 0.92058 1.00760 1.91580 1.27370 1.97117 1.92572 1.21349 0.92049 0.98901 1.01183 1.67103 1.08066 1.28781 1.23942 0.89779 0.82225 0.79666 0.84703 0.74448 0.79244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.97 13.65 21.84 0.30 -41.67 16 2 C 0.02 1.05 5.52 85.29 0.47 1.52 16 3 Si 1.16 54.83 22.22 68.60 1.52 56.35 16 4 H -0.32 -15.15 7.11 99.48 0.71 -14.44 16 5 H -0.28 -13.12 6.65 99.48 0.66 -12.46 16 6 H -0.28 -13.01 6.47 99.48 0.64 -12.37 16 7 C -0.47 -24.00 9.59 23.46 0.23 -23.77 16 8 H 0.09 4.43 8.06 -2.91 -0.02 4.41 16 9 C 0.19 9.17 6.42 40.23 0.26 9.43 16 10 C -0.04 -1.54 10.98 85.33 0.94 -0.60 16 11 N -0.42 -17.13 10.47 -192.01 -2.01 -19.14 16 12 C -0.07 -2.67 10.61 85.08 0.90 -1.77 16 13 C 0.14 5.75 6.73 42.13 0.28 6.03 16 14 C 0.03 0.90 5.87 -20.04 -0.12 0.78 16 15 C -0.15 -5.49 9.44 22.53 0.21 -5.28 16 16 C 0.12 3.92 7.02 22.41 0.16 4.08 16 17 F -0.12 -3.82 16.75 44.97 0.75 -3.07 16 18 C 0.00 0.02 5.34 22.63 0.12 0.14 16 19 O -0.32 -7.40 10.07 -92.79 -0.93 -8.34 16 20 C 0.39 6.84 6.35 113.37 0.72 7.56 16 21 F -0.21 -4.34 16.63 44.97 0.75 -3.59 16 22 F -0.21 -4.92 16.63 44.97 0.75 -4.18 16 23 C 0.14 3.49 7.01 22.41 0.16 3.65 16 24 F -0.11 -2.51 16.75 44.97 0.75 -1.76 16 25 C -0.12 -2.93 9.39 22.53 0.21 -2.72 16 26 N -0.56 -26.05 4.31 -177.68 -0.77 -26.82 16 27 H 0.29 14.31 8.72 -92.71 -0.81 13.50 16 28 H 0.16 6.24 8.06 -2.91 -0.02 6.22 16 29 H 0.19 4.92 6.21 -2.91 -0.02 4.90 16 30 H 0.14 5.48 2.58 -2.91 -0.01 5.48 16 31 H 0.24 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.19 3.54 6.21 -2.91 -0.02 3.52 16 Total: -1.00 -59.99 295.96 6.75 -53.24 By element: Atomic # 1 Polarization: -1.20 SS G_CDS: 1.09 Total: -0.10 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: 4.54 Total: -0.94 kcal Atomic # 7 Polarization: -85.15 SS G_CDS: -2.48 Total: -87.63 kcal Atomic # 8 Polarization: -7.40 SS G_CDS: -0.93 Total: -8.34 kcal Atomic # 9 Polarization: -15.59 SS G_CDS: 3.00 Total: -12.59 kcal Atomic # 14 Polarization: 54.83 SS G_CDS: 1.52 Total: 56.35 kcal Total: -59.99 6.75 -53.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243493110.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.696 kcal (2) G-P(sol) polarization free energy of solvation -59.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds