Wall clock time and date at job start Tue Mar 31 2020 15:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31536 * 1 3 3 Si 1.86797 * 119.99808 * 2 1 4 4 H 1.48507 * 109.46938 * 269.99281 * 3 2 1 5 5 H 1.48497 * 109.47600 * 29.99547 * 3 2 1 6 6 H 1.48501 * 109.47016 * 149.99825 * 3 2 1 7 7 C 1.38682 * 119.99501 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00766 * 0.28371 * 7 2 1 9 9 O 1.34802 * 119.99574 * 180.02562 * 7 2 1 10 10 C 1.35628 * 117.00020 * 174.92407 * 9 7 2 11 11 C 1.39088 * 119.92737 * 185.27191 * 10 9 7 12 12 C 1.37724 * 120.07608 * 179.72131 * 11 10 9 13 13 C 1.39702 * 119.91824 * 0.54302 * 12 11 10 14 14 C 1.47798 * 120.06724 * 179.74399 * 13 12 11 15 15 C 1.40652 * 120.29140 * 114.70007 * 14 13 12 16 16 C 1.47454 * 120.15169 * 0.02562 * 15 14 13 17 17 O 1.21498 * 119.99949 * 359.97438 * 16 15 14 18 18 O 1.34756 * 120.00056 * 179.97438 * 16 15 14 19 19 C 1.39566 * 119.69317 * 179.76843 * 15 14 13 20 20 C 1.38125 * 120.29921 * 0.51437 * 19 15 14 21 21 C 1.38119 * 120.60517 * 359.74065 * 20 19 15 22 22 C 1.39572 * 120.29430 * 0.02562 * 21 20 19 23 23 C 1.47462 * 120.15409 * 180.02562 * 22 21 20 24 24 O 1.21503 * 120.00203 * 179.97438 * 23 22 21 25 25 O 1.34757 * 119.99606 * 359.97438 * 23 22 21 26 26 C 1.39694 * 119.86019 * 359.73091 * 13 12 11 27 27 C 1.37724 * 119.92569 * 359.97438 * 26 13 12 28 28 H 0.97004 * 120.00157 * 0.02562 * 1 2 3 29 29 H 1.08006 * 119.96513 * 359.97438 * 11 10 9 30 30 H 1.07990 * 120.04077 * 180.25220 * 12 11 10 31 31 H 0.96698 * 116.99839 * 179.97438 * 18 16 15 32 32 H 1.08005 * 119.85537 * 180.23290 * 19 15 14 33 33 H 1.07994 * 119.69863 * 179.76464 * 20 19 15 34 34 H 1.08001 * 119.85361 * 179.97438 * 21 20 19 35 35 H 0.96693 * 117.00135 * 179.97438 * 25 23 22 36 36 H 1.07998 * 120.03870 * 179.97438 * 26 13 12 37 37 H 1.07994 * 119.96040 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4969 2.0463 -1.4001 5 1 1.4468 2.6527 0.6999 6 1 3.5468 1.4402 0.7001 7 6 2.0087 -1.2011 0.0005 8 1 1.4687 -2.1364 -0.0037 9 8 3.3567 -1.2011 0.0011 10 6 3.9724 -2.4048 0.1085 11 6 5.3568 -2.4680 0.2258 12 6 5.9847 -3.6884 0.3409 13 6 5.2303 -4.8641 0.3282 14 6 5.9012 -6.1758 0.4457 15 6 5.6776 -6.9887 1.5716 16 6 4.7707 -6.5370 2.6429 17 8 4.2149 -5.4602 2.5545 18 8 4.5582 -7.3185 3.7199 19 6 6.3139 -8.2272 1.6674 20 6 7.1681 -8.6510 0.6682 21 6 7.4008 -7.8604 -0.4402 22 6 6.7739 -6.6195 -0.5641 23 6 7.0241 -5.7782 -1.7490 24 8 6.4766 -4.6986 -1.8542 25 8 7.8601 -6.2067 -2.7152 26 6 3.8405 -4.7974 0.2044 27 6 3.2183 -3.5735 0.0959 28 1 -0.4850 0.8401 -0.0004 29 1 5.9399 -1.5589 0.2309 30 1 7.0594 -3.7367 0.4361 31 1 3.9558 -6.9796 4.3962 32 1 6.1411 -8.8552 2.5290 33 1 7.6583 -9.6094 0.7541 34 1 8.0714 -8.2035 -1.2141 35 1 7.9924 -5.6208 -3.4729 36 1 3.2544 -5.7045 0.1938 37 1 2.1439 -3.5212 0.0006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243590228.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:14 Heat of formation + Delta-G solvation = -161.002746 kcal Electronic energy + Delta-G solvation = -27311.821361 eV Core-core repulsion = 23177.620525 eV Total energy + Delta-G solvation = -4134.200836 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.087 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.98390 -40.95255 -40.68328 -39.34763 -38.20545 -36.98349 -36.88173 -34.51970 -33.13517 -32.83958 -31.84858 -29.76918 -27.36463 -25.72699 -25.66811 -23.73486 -23.30313 -22.08858 -21.52792 -19.83206 -19.32867 -19.16477 -18.79669 -18.34490 -17.37912 -17.05008 -16.82774 -16.58119 -16.45210 -15.99804 -15.85720 -15.70291 -15.52182 -15.27661 -14.78145 -14.43092 -14.24850 -14.16592 -14.14396 -13.61127 -13.28022 -13.12550 -12.93814 -12.66809 -12.56974 -12.53307 -12.40705 -12.36568 -11.98550 -11.55503 -11.43402 -11.31046 -10.84449 -10.26319 -10.06465 -9.67863 -8.77364 -8.52372 -6.24216 -0.50603 -0.37168 0.66571 0.71536 1.27404 1.32768 1.33990 1.49312 1.79901 1.86328 2.25962 2.26497 2.67995 2.75944 3.03816 3.15999 3.49205 3.86417 3.86998 4.00831 4.05711 4.08177 4.15063 4.38611 4.51495 4.67638 4.71674 4.78312 4.89100 5.13014 5.14999 5.23268 5.29014 5.36427 5.52752 5.64217 5.66086 5.67198 5.70435 5.76023 5.87358 6.22125 6.81451 7.02309 7.04967 7.56466 8.59662 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.015441 B = 0.003868 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.926510 B = 7237.409152 C = 8562.070259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.011 3.989 3 Si 0.973 3.027 4 H -0.264 1.264 5 H -0.263 1.263 6 H -0.265 1.265 7 C -0.401 4.401 8 H 0.076 0.924 9 O -0.243 6.243 10 C 0.134 3.866 11 C -0.199 4.199 12 C -0.015 4.015 13 C -0.115 4.115 14 C 0.075 3.925 15 C -0.150 4.150 16 C 0.515 3.485 17 O -0.526 6.526 18 O -0.503 6.503 19 C -0.012 4.012 20 C -0.132 4.132 21 C -0.011 4.011 22 C -0.149 4.149 23 C 0.517 3.483 24 O -0.524 6.524 25 O -0.503 6.503 26 C -0.017 4.017 27 C -0.240 4.240 28 H 0.286 0.714 29 H 0.125 0.875 30 H 0.131 0.869 31 H 0.431 0.569 32 H 0.173 0.827 33 H 0.187 0.813 34 H 0.175 0.825 35 H 0.431 0.569 36 H 0.111 0.889 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.201 -23.158 2.016 30.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.187 4.187 3 Si 0.794 3.206 4 H -0.188 1.188 5 H -0.187 1.187 6 H -0.190 1.190 7 C -0.478 4.478 8 H 0.094 0.906 9 O -0.151 6.151 10 C 0.084 3.916 11 C -0.218 4.218 12 C -0.033 4.033 13 C -0.115 4.115 14 C 0.074 3.926 15 C -0.151 4.151 16 C 0.359 3.641 17 O -0.416 6.416 18 O -0.317 6.317 19 C -0.030 4.030 20 C -0.149 4.149 21 C -0.029 4.029 22 C -0.150 4.150 23 C 0.362 3.638 24 O -0.413 6.413 25 O -0.317 6.317 26 C -0.036 4.036 27 C -0.259 4.259 28 H 0.095 0.905 29 H 0.143 0.857 30 H 0.149 0.851 31 H 0.292 0.708 32 H 0.191 0.809 33 H 0.205 0.795 34 H 0.193 0.807 35 H 0.293 0.707 36 H 0.129 0.871 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 19.997 -22.634 1.979 30.267 hybrid contribution -1.194 1.755 -0.145 2.127 sum 18.804 -20.879 1.835 28.158 Atomic orbital electron populations 1.69724 1.06877 1.29644 1.50149 1.25301 0.95935 1.02123 0.95375 0.85199 0.78706 0.77237 0.79417 1.18847 1.18695 1.18994 1.20723 0.78133 0.96133 1.52783 0.90607 1.83461 1.21289 1.27415 1.82926 1.19608 0.92908 0.84879 0.94163 1.20197 0.90611 0.99164 1.11837 1.20548 0.98478 0.90086 0.94188 1.18152 0.92394 0.92008 1.08989 1.18766 0.91151 0.91391 0.91302 1.19070 1.03797 0.98457 0.93798 1.20980 0.79551 0.81650 0.81887 1.91135 1.48390 1.23716 1.78310 1.84440 1.65516 1.50418 1.31369 1.22042 0.90114 0.91562 0.99299 1.21685 0.98699 1.02157 0.92373 1.22055 0.93477 0.89367 0.98010 1.19064 1.04399 0.97887 0.93645 1.20880 0.75790 0.84104 0.83044 1.91113 1.48341 1.23649 1.78241 1.84445 1.60806 1.53362 1.33070 1.20511 0.93427 0.95421 0.94210 1.20956 0.99617 0.93031 1.12336 0.90475 0.85696 0.85110 0.70771 0.80940 0.79537 0.80734 0.70679 0.87081 0.87794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.08 13.96 21.62 0.30 -57.78 16 2 C 0.01 0.67 5.49 84.84 0.47 1.14 16 3 Si 0.97 48.45 28.62 68.60 1.96 50.41 16 4 H -0.26 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 6 H -0.27 -13.34 7.11 99.48 0.71 -12.63 16 7 C -0.40 -25.81 9.94 67.93 0.68 -25.14 16 8 H 0.08 5.15 5.42 -2.91 -0.02 5.13 16 9 O -0.24 -14.74 8.58 -21.11 -0.18 -14.92 16 10 C 0.13 7.29 6.65 22.68 0.15 7.44 16 11 C -0.20 -9.27 9.97 22.35 0.22 -9.05 16 12 C -0.01 -0.59 7.15 22.50 0.16 -0.43 16 13 C -0.11 -4.39 2.53 -20.04 -0.05 -4.44 16 14 C 0.07 2.09 5.37 -19.57 -0.11 1.99 16 15 C -0.15 -3.41 5.89 -19.94 -0.12 -3.53 16 16 C 0.51 13.58 8.18 70.25 0.57 14.16 16 17 O -0.53 -19.59 13.34 19.84 0.26 -19.32 16 18 O -0.50 -8.56 12.67 -56.67 -0.72 -9.28 16 19 C -0.01 -0.15 9.60 22.56 0.22 0.06 16 20 C -0.13 -1.00 10.00 22.21 0.22 -0.78 16 21 C -0.01 -0.13 9.60 22.56 0.22 0.09 16 22 C -0.15 -3.25 5.89 -19.94 -0.12 -3.37 16 23 C 0.52 12.62 8.18 70.25 0.57 13.19 16 24 O -0.52 -18.02 13.33 19.82 0.26 -17.76 16 25 O -0.50 -7.51 12.67 -56.68 -0.72 -8.23 16 26 C -0.02 -0.77 7.17 22.50 0.16 -0.60 16 27 C -0.24 -12.60 9.15 22.35 0.20 -12.39 16 28 H 0.29 16.36 8.31 -92.71 -0.77 15.59 16 29 H 0.13 5.39 8.06 -2.91 -0.02 5.36 16 30 H 0.13 4.39 8.06 -2.92 -0.02 4.36 16 31 H 0.43 4.45 9.11 -74.06 -0.67 3.77 16 32 H 0.17 1.18 7.59 -2.91 -0.02 1.16 16 33 H 0.19 -0.19 8.06 -2.91 -0.02 -0.21 16 34 H 0.18 1.02 7.59 -2.91 -0.02 1.00 16 35 H 0.43 3.38 9.11 -74.06 -0.67 2.71 16 36 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 37 H 0.10 5.88 5.62 -2.91 -0.02 5.86 16 Total: -1.00 -89.66 330.24 4.46 -85.19 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -0.17 Total: 13.36 kcal Atomic # 6 Polarization: -25.13 SS G_CDS: 3.46 Total: -21.68 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: 0.30 Total: -57.78 kcal Atomic # 8 Polarization: -68.42 SS G_CDS: -1.09 Total: -69.51 kcal Atomic # 14 Polarization: 48.45 SS G_CDS: 1.96 Total: 50.41 kcal Total: -89.66 4.46 -85.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243590228.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.808 kcal (2) G-P(sol) polarization free energy of solvation -89.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds