Wall clock time and date at job start Tue Mar 31 2020 15:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31573 * 1 3 3 Si 1.86802 * 120.00177 * 2 1 4 4 H 1.48496 * 109.47320 * 270.00075 * 3 2 1 5 5 H 1.48506 * 109.46828 * 29.99828 * 3 2 1 6 6 H 1.48501 * 109.47107 * 149.99720 * 3 2 1 7 7 C 1.38637 * 120.00137 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99833 * 0.02562 * 7 2 1 9 9 O 1.34814 * 119.99906 * 180.02562 * 7 2 1 10 10 C 1.35703 * 116.99893 * 185.06322 * 9 7 2 11 11 C 1.39005 * 119.94247 * 354.44501 * 10 9 7 12 12 C 1.37835 * 120.05163 * 180.02562 * 11 10 9 13 13 C 1.39458 * 119.94900 * 359.97438 * 12 11 10 14 14 C 1.48287 * 120.05677 * 179.97438 * 13 12 11 15 15 C 1.39223 * 120.38960 * 359.97438 * 14 13 12 16 16 N 1.31826 * 120.65951 * 180.19281 * 15 14 13 17 17 C 1.32353 * 121.88317 * 359.39276 * 16 15 14 18 18 C 1.39911 * 121.01233 * 0.71071 * 17 16 15 19 19 C 1.38859 * 118.67390 * 359.58908 * 18 17 16 20 20 N 1.39160 * 121.79703 * 179.40947 * 18 17 16 21 21 C 1.33143 * 125.78514 * 22.18603 * 20 18 17 22 22 O 1.21296 * 118.30721 * 179.26813 * 21 20 18 23 23 C 1.50362 * 123.38404 * 359.24839 * 21 20 18 24 24 S 1.76537 * 119.94283 * 180.48149 * 17 16 15 25 25 C 1.39457 * 119.88998 * 0.25489 * 13 12 11 26 26 C 1.37841 * 119.93989 * 359.47014 * 25 13 12 27 27 H 0.96994 * 119.99932 * 0.02562 * 1 2 3 28 28 H 1.08003 * 119.97422 * 359.97438 * 11 10 9 29 29 H 1.08005 * 120.02454 * 180.02562 * 12 11 10 30 30 H 1.08000 * 119.67140 * 359.91136 * 15 14 13 31 31 H 1.08000 * 120.72610 * 180.02562 * 19 18 17 32 32 H 0.97001 * 117.10261 * 202.20029 * 20 18 17 33 33 H 1.08991 * 109.54386 * 84.71178 * 23 21 20 34 34 H 1.09002 * 109.54149 * 204.97421 * 23 21 20 35 35 H 1.07993 * 120.03131 * 179.74101 * 25 13 12 36 36 H 1.08004 * 119.97102 * 180.27112 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0464 -1.4000 5 1 1.4472 2.6527 0.7000 6 1 3.5473 1.4401 0.7001 7 6 2.0089 -1.2006 0.0005 8 1 1.4689 -2.1359 0.0005 9 8 3.3571 -1.2006 0.0011 10 6 3.9732 -2.4050 -0.1051 11 6 3.2200 -3.5732 -0.0916 12 6 3.8436 -4.7978 -0.1988 13 6 5.2312 -4.8641 -0.3214 14 6 5.9045 -6.1803 -0.4364 15 6 5.1594 -7.3563 -0.4222 16 7 5.7528 -8.5293 -0.5202 17 6 7.0656 -8.6402 -0.6468 18 6 7.8861 -7.5072 -0.6674 19 6 7.2956 -6.2549 -0.5606 20 7 9.2690 -7.6054 -0.7875 21 6 9.9347 -8.6397 -1.2971 22 8 11.1449 -8.5759 -1.3488 23 6 9.2637 -9.8831 -1.8116 24 16 7.8055 -10.2369 -0.7868 25 6 5.9850 -3.6909 -0.3299 26 6 5.3563 -2.4684 -0.2282 27 1 -0.4850 0.8400 -0.0004 28 1 2.1455 -3.5214 0.0038 29 1 3.2579 -5.7052 -0.1887 30 1 4.0848 -7.3072 -0.3255 31 1 7.8974 -5.3582 -0.5731 32 1 9.7945 -6.8537 -0.4719 33 1 8.9543 -9.7294 -2.8453 34 1 9.9588 -10.7211 -1.7584 35 1 7.0600 -3.7398 -0.4206 36 1 5.9392 -1.5593 -0.2391 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243592270.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:58 Heat of formation + Delta-G solvation = 8.595283 kcal Electronic energy + Delta-G solvation = -23386.219718 eV Core-core repulsion = 19734.418826 eV Total energy + Delta-G solvation = -3651.800892 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.22069 -39.98275 -39.23393 -37.05290 -36.01664 -33.12424 -32.50144 -31.11326 -30.63483 -30.06658 -28.42375 -25.72144 -24.33334 -24.11165 -21.99454 -21.65586 -20.46311 -18.61481 -18.25192 -17.97252 -17.95172 -17.43272 -16.69037 -15.91197 -15.57124 -15.23089 -14.80775 -14.51983 -14.46508 -14.13285 -14.05415 -13.90591 -13.64918 -13.57651 -12.94639 -12.56505 -12.45433 -12.39614 -12.05425 -11.69349 -11.59278 -11.38734 -11.10216 -10.94229 -10.64550 -10.36165 -10.10769 -9.71510 -9.60461 -9.08170 -9.06346 -8.58324 -8.10949 -7.26591 -6.66089 -4.30190 0.26741 0.79468 0.84222 1.67122 1.89397 2.07121 2.16393 2.38285 3.07439 3.11681 3.24432 3.48997 3.63432 4.03682 4.20717 4.31316 4.42271 4.43347 4.54361 4.67019 4.72786 4.87611 4.88310 4.99115 5.28386 5.31479 5.50858 5.70414 5.83324 5.95567 6.07290 6.23159 6.26122 6.50347 6.61309 6.76497 6.91349 6.99841 7.29762 7.30794 7.53514 7.58139 7.77082 8.66932 9.25732 10.39981 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.031790 B = 0.002302 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.574502 B =12158.895312 C =12973.446575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.066 3.934 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.258 1.258 7 C -0.391 4.391 8 H 0.111 0.889 9 O -0.202 6.202 10 C 0.170 3.830 11 C -0.223 4.223 12 C -0.044 4.044 13 C -0.164 4.164 14 C -0.002 4.002 15 C 0.082 3.918 16 N -0.420 5.420 17 C 0.049 3.951 18 C 0.122 3.878 19 C -0.116 4.116 20 N -0.650 5.650 21 C 0.526 3.474 22 O -0.518 6.518 23 C -0.137 4.137 24 S -0.038 6.038 25 C -0.051 4.051 26 C -0.193 4.193 27 H 0.284 0.716 28 H 0.139 0.861 29 H 0.118 0.882 30 H 0.169 0.831 31 H 0.146 0.854 32 H 0.415 0.585 33 H 0.127 0.873 34 H 0.153 0.847 35 H 0.117 0.883 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.218 -14.402 -2.269 20.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.182 1.182 7 C -0.466 4.466 8 H 0.129 0.871 9 O -0.105 6.105 10 C 0.116 3.884 11 C -0.242 4.242 12 C -0.062 4.062 13 C -0.166 4.166 14 C -0.007 4.007 15 C -0.081 4.081 16 N -0.129 5.129 17 C -0.201 4.201 18 C 0.018 3.982 19 C -0.145 4.145 20 N -0.294 5.294 21 C 0.311 3.689 22 O -0.394 6.394 23 C -0.288 4.288 24 S 0.199 5.801 25 C -0.070 4.070 26 C -0.212 4.212 27 H 0.094 0.906 28 H 0.157 0.843 29 H 0.136 0.864 30 H 0.186 0.814 31 H 0.164 0.836 32 H 0.253 0.747 33 H 0.145 0.855 34 H 0.171 0.829 35 H 0.135 0.865 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 13.866 -16.121 -1.932 21.351 hybrid contribution 0.991 3.053 -0.383 3.233 sum 14.856 -13.068 -2.316 19.921 Atomic orbital electron populations 1.69639 1.05674 1.29057 1.45736 1.24538 0.95096 0.99138 0.95181 0.86157 0.80372 0.81093 0.79218 1.19620 1.20477 1.18197 1.20862 0.76592 0.96953 1.52177 0.87141 1.83551 1.22989 1.26098 1.77815 1.19269 0.91739 0.85431 0.91983 1.21232 1.01456 0.91524 1.09964 1.20871 0.92809 0.97184 0.95344 1.18013 0.93233 0.90191 1.15145 1.19674 0.92073 0.94627 0.94322 1.22930 1.00752 0.85878 0.98557 1.67561 1.07587 1.27831 1.09895 1.22385 0.92980 0.95134 1.09617 1.18377 0.82938 0.94769 1.02116 1.21287 0.94891 0.95352 1.02970 1.42980 1.05221 1.21144 1.60026 1.19903 0.87752 0.83818 0.77400 1.90841 1.13344 1.80610 1.54585 1.23904 1.00239 1.00097 1.04566 1.85911 1.23217 1.06532 1.64418 1.20668 0.98336 0.91041 0.96906 1.20142 0.91925 0.97889 1.11265 0.90598 0.84333 0.86395 0.81376 0.83637 0.74718 0.85529 0.82921 0.86545 0.86006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.31 13.96 55.48 0.77 -22.53 16 2 C 0.07 1.72 5.49 -17.52 -0.10 1.62 16 3 Si 0.91 20.04 28.62 -169.99 -4.86 15.18 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.39 -10.09 9.94 30.88 0.31 -9.78 16 8 H 0.11 2.89 5.42 -52.49 -0.28 2.60 16 9 O -0.20 -4.82 8.58 0.24 0.00 -4.81 16 10 C 0.17 3.48 6.65 -39.02 -0.26 3.22 16 11 C -0.22 -4.18 9.15 -39.44 -0.36 -4.54 16 12 C -0.04 -0.67 9.43 -39.27 -0.37 -1.04 16 13 C -0.16 -2.34 5.88 -104.86 -0.62 -2.96 16 14 C 0.00 -0.03 5.89 -104.79 -0.62 -0.65 16 15 C 0.08 1.01 10.59 -17.19 -0.18 0.83 16 16 N -0.42 -5.53 10.32 -11.59 -0.12 -5.65 16 17 C 0.05 0.59 6.95 -16.70 -0.12 0.48 16 18 C 0.12 1.31 6.55 -83.68 -0.55 0.77 16 19 C -0.12 -1.25 9.31 -38.74 -0.36 -1.61 16 20 N -0.65 -6.07 5.09 -10.26 -0.05 -6.12 16 21 C 0.53 5.23 7.60 -11.87 -0.09 5.14 16 22 O -0.52 -6.57 17.77 5.54 0.10 -6.47 16 23 C -0.14 -1.04 6.63 35.84 0.24 -0.80 16 24 S -0.04 -0.38 22.47 -107.50 -2.42 -2.80 16 25 C -0.05 -0.73 9.43 -39.27 -0.37 -1.10 16 26 C -0.19 -3.30 9.98 -39.45 -0.39 -3.69 16 27 H 0.28 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.14 2.74 5.62 -52.48 -0.30 2.45 16 29 H 0.12 1.47 6.21 -52.48 -0.33 1.15 16 30 H 0.17 1.79 6.20 -52.49 -0.33 1.46 16 31 H 0.15 1.24 6.29 -52.49 -0.33 0.91 16 32 H 0.41 3.20 8.59 -40.82 -0.35 2.85 16 33 H 0.13 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.15 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.12 1.28 6.25 -52.49 -0.33 0.95 16 36 H 0.12 1.92 8.06 -52.48 -0.42 1.49 16 LS Contribution 324.82 15.07 4.89 4.89 Total: -1.00 -29.32 324.82 -8.16 -37.48 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -2.64 Total: 4.96 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -3.84 Total: -14.13 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.60 Total: -34.30 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.10 Total: -11.28 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.86 Total: 15.18 kcal Atomic # 16 Polarization: -0.38 SS G_CDS: -2.42 Total: -2.80 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.32 -8.16 -37.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243592270.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.078 kcal (2) G-P(sol) polarization free energy of solvation -29.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds