Wall clock time and date at job start Tue Mar 31 2020 15:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31573 * 1 3 3 Si 1.86802 * 120.00177 * 2 1 4 4 H 1.48496 * 109.47320 * 270.00075 * 3 2 1 5 5 H 1.48506 * 109.46828 * 29.99828 * 3 2 1 6 6 H 1.48501 * 109.47107 * 149.99720 * 3 2 1 7 7 C 1.38637 * 120.00137 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99833 * 0.02562 * 7 2 1 9 9 O 1.34814 * 119.99906 * 180.02562 * 7 2 1 10 10 C 1.35703 * 116.99893 * 185.06322 * 9 7 2 11 11 C 1.39005 * 119.94247 * 354.44501 * 10 9 7 12 12 C 1.37835 * 120.05163 * 180.02562 * 11 10 9 13 13 C 1.39458 * 119.94900 * 359.97438 * 12 11 10 14 14 C 1.48287 * 120.05677 * 179.97438 * 13 12 11 15 15 C 1.39223 * 120.38960 * 359.97438 * 14 13 12 16 16 N 1.31826 * 120.65951 * 180.19281 * 15 14 13 17 17 C 1.32353 * 121.88317 * 359.39276 * 16 15 14 18 18 C 1.39911 * 121.01233 * 0.71071 * 17 16 15 19 19 C 1.38859 * 118.67390 * 359.58908 * 18 17 16 20 20 N 1.39160 * 121.79703 * 179.40947 * 18 17 16 21 21 C 1.33143 * 125.78514 * 22.18603 * 20 18 17 22 22 O 1.21296 * 118.30721 * 179.26813 * 21 20 18 23 23 C 1.50362 * 123.38404 * 359.24839 * 21 20 18 24 24 S 1.76537 * 119.94283 * 180.48149 * 17 16 15 25 25 C 1.39457 * 119.88998 * 0.25489 * 13 12 11 26 26 C 1.37841 * 119.93989 * 359.47014 * 25 13 12 27 27 H 0.96994 * 119.99932 * 0.02562 * 1 2 3 28 28 H 1.08003 * 119.97422 * 359.97438 * 11 10 9 29 29 H 1.08005 * 120.02454 * 180.02562 * 12 11 10 30 30 H 1.08000 * 119.67140 * 359.91136 * 15 14 13 31 31 H 1.08000 * 120.72610 * 180.02562 * 19 18 17 32 32 H 0.97001 * 117.10261 * 202.20029 * 20 18 17 33 33 H 1.08991 * 109.54386 * 84.71178 * 23 21 20 34 34 H 1.09002 * 109.54149 * 204.97421 * 23 21 20 35 35 H 1.07993 * 120.03131 * 179.74101 * 25 13 12 36 36 H 1.08004 * 119.97102 * 180.27112 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0464 -1.4000 5 1 1.4472 2.6527 0.7000 6 1 3.5473 1.4401 0.7001 7 6 2.0089 -1.2006 0.0005 8 1 1.4689 -2.1359 0.0005 9 8 3.3571 -1.2006 0.0011 10 6 3.9732 -2.4050 -0.1051 11 6 3.2200 -3.5732 -0.0916 12 6 3.8436 -4.7978 -0.1988 13 6 5.2312 -4.8641 -0.3214 14 6 5.9045 -6.1803 -0.4364 15 6 5.1594 -7.3563 -0.4222 16 7 5.7528 -8.5293 -0.5202 17 6 7.0656 -8.6402 -0.6468 18 6 7.8861 -7.5072 -0.6674 19 6 7.2956 -6.2549 -0.5606 20 7 9.2690 -7.6054 -0.7875 21 6 9.9347 -8.6397 -1.2971 22 8 11.1449 -8.5759 -1.3488 23 6 9.2637 -9.8831 -1.8116 24 16 7.8055 -10.2369 -0.7868 25 6 5.9850 -3.6909 -0.3299 26 6 5.3563 -2.4684 -0.2282 27 1 -0.4850 0.8400 -0.0004 28 1 2.1455 -3.5214 0.0038 29 1 3.2579 -5.7052 -0.1887 30 1 4.0848 -7.3072 -0.3255 31 1 7.8974 -5.3582 -0.5731 32 1 9.7945 -6.8537 -0.4719 33 1 8.9543 -9.7294 -2.8453 34 1 9.9588 -10.7211 -1.7584 35 1 7.0600 -3.7398 -0.4206 36 1 5.9392 -1.5593 -0.2391 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243592270.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:58 Heat of formation + Delta-G solvation = -10.138155 kcal Electronic energy + Delta-G solvation = -23387.032061 eV Core-core repulsion = 19734.418826 eV Total energy + Delta-G solvation = -3652.613234 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.10303 -41.08353 -40.51320 -38.43401 -36.91490 -34.61473 -33.94178 -32.25339 -31.54785 -30.98329 -29.67825 -27.36346 -25.33864 -25.23068 -23.23703 -22.83425 -21.48338 -19.92495 -19.43284 -19.12268 -18.95972 -18.64341 -17.52970 -16.89604 -16.81632 -16.18292 -16.17981 -15.79898 -15.66798 -15.52553 -15.30416 -14.97925 -14.68208 -14.38288 -14.20745 -14.08803 -13.93408 -13.45929 -13.32544 -12.87120 -12.74517 -12.50038 -12.43171 -12.30656 -11.98534 -11.55811 -11.34190 -11.19375 -10.81787 -10.60282 -9.93011 -9.89214 -9.19471 -8.52181 -8.44063 -6.23814 -0.69115 -0.11308 0.02389 0.54213 0.72802 0.98360 1.33273 1.36105 1.37958 1.52355 1.61949 2.26725 2.44654 2.83411 2.88722 3.01821 3.17077 3.30403 3.49390 3.71666 3.81767 3.89405 3.92357 4.08554 4.23562 4.28260 4.45091 4.47853 4.62791 4.80035 5.02196 5.12685 5.20660 5.26439 5.41073 5.53707 5.63438 5.75834 5.81221 5.83902 6.13952 6.53643 6.64817 6.81667 7.53236 8.58647 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.031790 B = 0.002302 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.574502 B =12158.895312 C =12973.446575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.012 3.988 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.270 1.270 6 H -0.260 1.260 7 C -0.400 4.400 8 H 0.087 0.913 9 O -0.237 6.237 10 C 0.133 3.867 11 C -0.237 4.237 12 C -0.048 4.048 13 C -0.131 4.131 14 C -0.023 4.023 15 C 0.084 3.916 16 N -0.444 5.444 17 C 0.047 3.953 18 C 0.121 3.879 19 C -0.096 4.096 20 N -0.643 5.643 21 C 0.527 3.473 22 O -0.546 6.546 23 C -0.128 4.128 24 S -0.043 6.043 25 C -0.045 4.045 26 C -0.190 4.190 27 H 0.285 0.715 28 H 0.115 0.885 29 H 0.146 0.854 30 H 0.180 0.820 31 H 0.175 0.825 32 H 0.423 0.577 33 H 0.148 0.852 34 H 0.176 0.824 35 H 0.163 0.837 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.203 -16.510 -2.899 24.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.188 4.188 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.195 1.195 6 H -0.184 1.184 7 C -0.476 4.476 8 H 0.104 0.896 9 O -0.143 6.143 10 C 0.082 3.918 11 C -0.256 4.256 12 C -0.066 4.066 13 C -0.133 4.133 14 C -0.028 4.028 15 C -0.078 4.078 16 N -0.153 5.153 17 C -0.204 4.204 18 C 0.017 3.983 19 C -0.124 4.124 20 N -0.287 5.287 21 C 0.313 3.687 22 O -0.423 6.423 23 C -0.279 4.279 24 S 0.195 5.805 25 C -0.063 4.063 26 C -0.209 4.209 27 H 0.095 0.905 28 H 0.133 0.867 29 H 0.163 0.837 30 H 0.197 0.803 31 H 0.192 0.808 32 H 0.263 0.737 33 H 0.166 0.834 34 H 0.193 0.807 35 H 0.180 0.820 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 17.892 -18.284 -2.560 25.710 hybrid contribution 0.190 3.043 -0.242 3.059 sum 18.083 -15.241 -2.802 23.814 Atomic orbital electron populations 1.69728 1.06956 1.29734 1.49439 1.25290 0.95852 1.02227 0.95396 0.85237 0.78927 0.77433 0.79294 1.19092 1.19490 1.18378 1.20741 0.77950 0.96290 1.52599 0.89595 1.83508 1.21404 1.27630 1.81780 1.19862 0.93331 0.85060 0.93503 1.21243 1.00605 0.92834 1.10895 1.21143 0.93935 0.96786 0.94774 1.18293 0.92701 0.91455 1.10838 1.19506 0.92910 0.93364 0.97022 1.23165 1.01491 0.85841 0.97265 1.67648 1.08312 1.28117 1.11226 1.22850 0.93023 0.96595 1.07909 1.18310 0.83423 0.94419 1.02164 1.21563 0.94265 0.96451 1.00150 1.42921 1.04637 1.21539 1.59623 1.20240 0.87400 0.84254 0.76784 1.90846 1.14548 1.81178 1.55767 1.24058 0.99083 0.99852 1.04894 1.86018 1.23895 1.05532 1.65062 1.21141 1.00572 0.89556 0.95035 1.20475 0.90467 0.99866 1.10132 0.90489 0.86731 0.83683 0.80342 0.80757 0.73695 0.83431 0.80690 0.81978 0.84614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.77 13.96 21.61 0.30 -52.47 16 2 C 0.01 0.64 5.49 84.83 0.47 1.10 16 3 Si 0.97 43.11 28.62 68.60 1.96 45.07 16 4 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 6 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.40 -22.16 9.94 67.92 0.68 -21.48 16 8 H 0.09 4.97 5.42 -2.91 -0.02 4.95 16 9 O -0.24 -11.88 8.58 -22.05 -0.19 -12.07 16 10 C 0.13 5.55 6.65 22.64 0.15 5.70 16 11 C -0.24 -9.21 9.15 22.36 0.20 -9.01 16 12 C -0.05 -1.43 9.43 22.47 0.21 -1.21 16 13 C -0.13 -3.31 5.88 -20.02 -0.12 -3.43 16 14 C -0.02 -0.48 5.89 -19.97 -0.12 -0.60 16 15 C 0.08 1.82 10.59 84.93 0.90 2.72 16 16 N -0.44 -10.37 10.32 -190.59 -1.97 -12.34 16 17 C 0.05 0.96 6.95 85.02 0.59 1.55 16 18 C 0.12 2.09 6.55 38.53 0.25 2.34 16 19 C -0.10 -1.57 9.31 22.81 0.21 -1.36 16 20 N -0.64 -9.32 5.09 -305.68 -1.55 -10.87 16 21 C 0.53 8.49 7.60 87.80 0.67 9.16 16 22 O -0.55 -12.10 17.77 -3.08 -0.05 -12.15 16 23 C -0.13 -1.43 6.63 71.13 0.47 -0.96 16 24 S -0.04 -0.72 22.47 -56.49 -1.27 -1.99 16 25 C -0.05 -1.11 9.43 22.47 0.21 -0.90 16 26 C -0.19 -6.18 9.98 22.36 0.22 -5.96 16 27 H 0.29 15.06 8.31 -92.71 -0.77 14.29 16 28 H 0.11 4.98 5.62 -2.91 -0.02 4.96 16 29 H 0.15 3.38 6.21 -2.91 -0.02 3.37 16 30 H 0.18 3.31 6.20 -2.91 -0.02 3.29 16 31 H 0.18 1.81 6.29 -2.91 -0.02 1.79 16 32 H 0.42 4.68 8.59 -92.71 -0.80 3.89 16 33 H 0.15 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.18 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.16 2.52 6.25 -2.91 -0.02 2.50 16 36 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -68.51 324.82 2.62 -65.89 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 0.39 Total: 13.27 kcal Atomic # 6 Polarization: -27.34 SS G_CDS: 5.00 Total: -22.33 kcal Atomic # 7 Polarization: -72.46 SS G_CDS: -3.22 Total: -75.68 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.24 Total: -24.22 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.96 Total: 45.07 kcal Atomic # 16 Polarization: -0.72 SS G_CDS: -1.27 Total: -1.99 kcal Total: -68.51 2.62 -65.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243592270.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.751 kcal (2) G-P(sol) polarization free energy of solvation -68.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds