Wall clock time and date at job start Tue Mar 31 2020 15:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86801 * 119.99817 * 2 1 4 4 H 1.48500 * 109.46932 * 0.02562 * 3 2 1 5 5 H 1.48494 * 109.47010 * 120.00541 * 3 2 1 6 6 H 1.48501 * 109.47182 * 240.00672 * 3 2 1 7 7 C 1.38661 * 119.99976 * 179.72857 * 2 1 3 8 8 H 1.08009 * 120.00028 * 179.97438 * 7 2 1 9 9 O 1.34811 * 120.00620 * 359.97438 * 7 2 1 10 10 C 1.35687 * 117.00383 * 174.92305 * 9 7 2 11 11 C 1.39405 * 120.39227 * 5.18333 * 10 9 7 12 12 C 1.38245 * 118.45177 * 179.71375 * 11 10 9 13 13 C 1.39412 * 119.14349 * 0.55949 * 12 11 10 14 14 C 1.48307 * 119.64363 * 179.72784 * 13 12 11 15 15 C 1.39707 * 120.89511 * 359.69042 * 14 13 12 16 16 C 1.38309 * 118.98919 * 179.79874 * 15 14 13 17 17 F 1.35098 * 119.59080 * 180.22810 * 16 15 14 18 18 N 1.32108 * 120.82271 * 0.49371 * 16 15 14 19 19 C 1.31956 * 121.97360 * 359.73946 * 18 16 15 20 20 C 1.50702 * 119.53583 * 180.02562 * 19 18 16 21 21 F 1.39902 * 109.46882 * 270.01740 * 20 19 18 22 22 F 1.39902 * 109.47196 * 30.01873 * 20 19 18 23 23 F 1.39901 * 109.47284 * 150.01947 * 20 19 18 24 24 C 1.37928 * 120.92620 * 0.02562 * 19 18 16 25 25 N 1.32680 * 120.70349 * 359.70241 * 13 12 11 26 26 C 1.31613 * 121.69846 * 0.02562 * 25 13 12 27 27 H 0.97000 * 119.99788 * 180.02562 * 1 2 3 28 28 H 1.07999 * 120.77297 * 359.97438 * 11 10 9 29 29 H 1.07992 * 120.43135 * 180.25973 * 12 11 10 30 30 H 1.07993 * 120.50688 * 0.02562 * 15 14 13 31 31 H 1.07994 * 120.46584 * 179.97438 * 24 19 18 32 32 H 1.07997 * 119.61308 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 1.2844 2.7464 0.0006 5 1 3.1033 1.6964 1.2124 6 1 3.1031 1.6966 -1.2126 7 6 2.0088 -1.2008 0.0057 8 1 3.0889 -1.2008 0.0053 9 8 1.3349 -2.3684 0.0117 10 6 2.0698 -3.5045 -0.0899 11 6 3.4626 -3.4462 -0.0862 12 6 4.1716 -4.6288 -0.1859 13 6 3.4745 -5.8309 -0.2978 14 6 4.2240 -7.1056 -0.4115 15 6 5.6210 -7.1186 -0.4144 16 6 6.2798 -8.3302 -0.5181 17 9 7.6306 -8.3573 -0.5175 18 7 5.6048 -9.4610 -0.6230 19 6 4.2856 -9.4893 -0.6287 20 6 3.5714 -10.8107 -0.7506 21 9 3.3539 -11.1004 -2.1019 22 9 4.3545 -11.8186 -0.1777 23 9 2.3428 -10.7399 -0.0852 24 6 3.5512 -8.3264 -0.5248 25 7 2.1478 -5.8467 -0.3033 26 6 1.4426 -4.7399 -0.2048 27 1 -0.4850 -0.8401 0.0004 28 1 3.9758 -2.4995 -0.0032 29 1 5.2515 -4.6211 -0.1820 30 1 6.1779 -6.1969 -0.3332 31 1 2.4717 -8.3582 -0.5307 32 1 0.3639 -4.7919 -0.2123 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243910946.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:54 Heat of formation + Delta-G solvation = -150.326167 kcal Electronic energy + Delta-G solvation = -26185.228625 eV Core-core repulsion = 21418.466466 eV Total energy + Delta-G solvation = -4766.762159 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.32047 -49.25714 -47.85170 -47.76793 -40.67134 -39.74269 -37.74471 -33.83947 -32.76946 -32.14632 -31.57558 -29.21584 -26.92607 -25.77340 -24.04645 -23.61214 -22.59972 -21.60115 -19.22727 -18.80685 -18.70015 -18.67232 -17.60237 -17.35636 -16.65172 -16.36546 -16.31799 -15.76654 -15.47467 -14.71881 -14.58675 -14.56499 -14.28065 -14.21180 -14.11704 -13.93273 -13.92409 -13.82946 -13.61818 -13.57346 -13.04754 -12.90997 -12.77666 -12.31754 -11.98175 -11.20246 -11.00982 -10.53853 -10.41200 -10.24077 -10.19014 -9.48324 -9.41462 -9.19029 -9.12305 -7.75030 -7.25512 -4.49834 0.24676 0.50635 1.66853 1.88503 2.15916 3.01450 3.02482 3.09749 3.13031 3.22156 3.48529 3.70923 3.79924 4.17160 4.23433 4.27142 4.47597 4.58710 4.68146 4.73601 4.75165 5.02205 5.20993 5.25575 5.46128 5.53368 5.72959 5.92276 6.08771 6.21774 6.47356 6.61596 6.96611 7.04949 7.08224 7.87754 8.27954 8.38195 9.00004 10.17220 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.022356 B = 0.002630 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.155561 B =10645.277914 C =11716.566099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.017 3.983 3 Si 1.096 2.904 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.467 4.467 8 H 0.092 0.908 9 O -0.169 6.169 10 C 0.115 3.885 11 C -0.203 4.203 12 C -0.079 4.079 13 C 0.008 3.992 14 C 0.081 3.919 15 C -0.175 4.175 16 C 0.321 3.679 17 F -0.106 7.106 18 N -0.495 5.495 19 C 0.070 3.930 20 C 0.527 3.473 21 F -0.169 7.169 22 F -0.165 7.165 23 F -0.166 7.166 24 C -0.118 4.118 25 N -0.419 5.419 26 C 0.040 3.960 27 H 0.288 0.712 28 H 0.143 0.857 29 H 0.126 0.874 30 H 0.159 0.841 31 H 0.165 0.835 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.263 -12.238 -0.798 14.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.192 4.192 3 Si 0.918 3.082 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.542 4.542 8 H 0.110 0.890 9 O -0.068 6.068 10 C 0.055 3.945 11 C -0.228 4.228 12 C -0.100 4.100 13 C -0.124 4.124 14 C 0.073 3.927 15 C -0.197 4.197 16 C 0.166 3.834 17 F -0.085 7.085 18 N -0.211 5.211 19 C -0.067 4.067 20 C 0.472 3.528 21 F -0.150 7.150 22 F -0.146 7.146 23 F -0.147 7.147 24 C -0.139 4.139 25 N -0.129 5.129 26 C -0.127 4.127 27 H 0.099 0.901 28 H 0.161 0.839 29 H 0.144 0.856 30 H 0.176 0.824 31 H 0.182 0.818 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 7.853 -12.069 -0.918 14.428 hybrid contribution 0.611 -0.373 0.139 0.729 sum 8.464 -12.441 -0.779 15.067 Atomic orbital electron populations 1.70587 1.06727 1.32371 1.38358 1.26829 0.96688 1.01514 0.94212 0.83098 0.74712 0.72800 0.77574 1.19314 1.20239 1.20235 1.22489 0.93670 0.81758 1.56241 0.89014 1.83622 1.36008 1.12467 1.74712 1.20424 0.91079 0.88573 0.94432 1.21452 0.93711 0.99110 1.08570 1.21677 1.00004 0.91852 0.96429 1.18547 0.89629 0.90241 1.13960 1.18584 0.90965 0.92283 0.90863 1.21985 0.94722 0.98480 1.04528 1.17546 0.78586 0.88809 0.98427 1.91654 1.26634 1.96830 1.93355 1.66209 1.08589 1.30690 1.15570 1.20379 0.89348 0.92980 1.04038 1.17737 0.76808 0.83894 0.74359 1.93245 1.94834 1.94117 1.32848 1.93233 1.74303 1.62546 1.84492 1.93239 1.44457 1.96378 1.80651 1.21982 1.03183 0.90368 0.98360 1.67196 1.06785 1.30099 1.08801 1.21735 0.99746 0.84987 1.06223 0.90149 0.83933 0.85631 0.82364 0.81756 0.82575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.52 13.70 55.48 0.76 -21.76 16 2 C 0.02 0.41 5.49 -17.52 -0.10 0.31 16 3 Si 1.10 20.51 29.92 -169.99 -5.09 15.43 16 4 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 5 H -0.28 -4.86 7.11 56.52 0.40 -4.46 16 6 H -0.28 -4.86 7.11 56.52 0.40 -4.46 16 7 C -0.47 -11.31 9.50 30.89 0.29 -11.02 16 8 H 0.09 2.04 5.25 -52.48 -0.28 1.77 16 9 O -0.17 -4.09 9.16 0.30 0.00 -4.09 16 10 C 0.11 2.36 6.67 -38.86 -0.26 2.10 16 11 C -0.20 -3.73 9.25 -39.14 -0.36 -4.09 16 12 C -0.08 -1.23 9.47 -39.14 -0.37 -1.60 16 13 C 0.01 0.14 6.74 -82.92 -0.56 -0.42 16 14 C 0.08 1.14 5.91 -104.60 -0.62 0.52 16 15 C -0.18 -2.11 9.46 -39.01 -0.37 -2.48 16 16 C 0.32 4.16 8.40 -17.41 -0.15 4.01 16 17 F -0.11 -1.31 17.29 2.25 0.04 -1.27 16 18 N -0.49 -7.04 9.96 -9.89 -0.10 -7.13 16 19 C 0.07 0.94 6.29 -82.65 -0.52 0.42 16 20 C 0.53 6.57 3.43 36.01 0.12 6.70 16 21 F -0.17 -2.11 17.30 2.25 0.04 -2.07 16 22 F -0.16 -2.13 17.03 2.25 0.04 -2.09 16 23 F -0.17 -1.98 16.43 2.25 0.04 -1.94 16 24 C -0.12 -1.59 8.97 -39.09 -0.35 -1.94 16 25 N -0.42 -7.36 9.51 -9.61 -0.09 -7.46 16 26 C 0.04 0.74 11.14 -17.35 -0.19 0.55 16 27 H 0.29 7.72 7.97 -40.82 -0.33 7.40 16 28 H 0.14 2.55 5.75 -52.49 -0.30 2.25 16 29 H 0.13 1.49 6.27 -52.49 -0.33 1.17 16 30 H 0.16 1.51 6.31 -52.49 -0.33 1.17 16 31 H 0.16 2.15 7.16 -52.49 -0.38 1.78 16 32 H 0.16 2.64 8.06 -52.49 -0.42 2.21 16 LS Contribution 309.12 15.07 4.66 4.66 Total: -1.00 -26.23 309.12 -4.29 -30.52 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -1.16 Total: 4.15 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -3.43 Total: -6.94 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 0.57 Total: -36.35 kcal Atomic # 8 Polarization: -4.09 SS G_CDS: 0.00 Total: -4.09 kcal Atomic # 9 Polarization: -7.53 SS G_CDS: 0.15 Total: -7.37 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.09 Total: 15.43 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -26.23 -4.29 -30.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243910946.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.808 kcal (2) G-P(sol) polarization free energy of solvation -26.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds