Wall clock time and date at job start Tue Mar 31 2020 15:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86801 * 119.99817 * 2 1 4 4 H 1.48500 * 109.46932 * 0.02562 * 3 2 1 5 5 H 1.48494 * 109.47010 * 120.00541 * 3 2 1 6 6 H 1.48501 * 109.47182 * 240.00672 * 3 2 1 7 7 C 1.38661 * 119.99976 * 179.72857 * 2 1 3 8 8 H 1.08009 * 120.00028 * 179.97438 * 7 2 1 9 9 O 1.34811 * 120.00620 * 359.97438 * 7 2 1 10 10 C 1.35687 * 117.00383 * 174.92305 * 9 7 2 11 11 C 1.39405 * 120.39227 * 5.18333 * 10 9 7 12 12 C 1.38245 * 118.45177 * 179.71375 * 11 10 9 13 13 C 1.39412 * 119.14349 * 0.55949 * 12 11 10 14 14 C 1.48307 * 119.64363 * 179.72784 * 13 12 11 15 15 C 1.39707 * 120.89511 * 359.69042 * 14 13 12 16 16 C 1.38309 * 118.98919 * 179.79874 * 15 14 13 17 17 F 1.35098 * 119.59080 * 180.22810 * 16 15 14 18 18 N 1.32108 * 120.82271 * 0.49371 * 16 15 14 19 19 C 1.31956 * 121.97360 * 359.73946 * 18 16 15 20 20 C 1.50702 * 119.53583 * 180.02562 * 19 18 16 21 21 F 1.39902 * 109.46882 * 270.01740 * 20 19 18 22 22 F 1.39902 * 109.47196 * 30.01873 * 20 19 18 23 23 F 1.39901 * 109.47284 * 150.01947 * 20 19 18 24 24 C 1.37928 * 120.92620 * 0.02562 * 19 18 16 25 25 N 1.32680 * 120.70349 * 359.70241 * 13 12 11 26 26 C 1.31613 * 121.69846 * 0.02562 * 25 13 12 27 27 H 0.97000 * 119.99788 * 180.02562 * 1 2 3 28 28 H 1.07999 * 120.77297 * 359.97438 * 11 10 9 29 29 H 1.07992 * 120.43135 * 180.25973 * 12 11 10 30 30 H 1.07993 * 120.50688 * 0.02562 * 15 14 13 31 31 H 1.07994 * 120.46584 * 179.97438 * 24 19 18 32 32 H 1.07997 * 119.61308 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 1.2844 2.7464 0.0006 5 1 3.1033 1.6964 1.2124 6 1 3.1031 1.6966 -1.2126 7 6 2.0088 -1.2008 0.0057 8 1 3.0889 -1.2008 0.0053 9 8 1.3349 -2.3684 0.0117 10 6 2.0698 -3.5045 -0.0899 11 6 3.4626 -3.4462 -0.0862 12 6 4.1716 -4.6288 -0.1859 13 6 3.4745 -5.8309 -0.2978 14 6 4.2240 -7.1056 -0.4115 15 6 5.6210 -7.1186 -0.4144 16 6 6.2798 -8.3302 -0.5181 17 9 7.6306 -8.3573 -0.5175 18 7 5.6048 -9.4610 -0.6230 19 6 4.2856 -9.4893 -0.6287 20 6 3.5714 -10.8107 -0.7506 21 9 3.3539 -11.1004 -2.1019 22 9 4.3545 -11.8186 -0.1777 23 9 2.3428 -10.7399 -0.0852 24 6 3.5512 -8.3264 -0.5248 25 7 2.1478 -5.8467 -0.3033 26 6 1.4426 -4.7399 -0.2048 27 1 -0.4850 -0.8401 0.0004 28 1 3.9758 -2.4995 -0.0032 29 1 5.2515 -4.6211 -0.1820 30 1 6.1779 -6.1969 -0.3332 31 1 2.4717 -8.3582 -0.5307 32 1 0.3639 -4.7919 -0.2123 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243910946.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:53 Heat of formation + Delta-G solvation = -164.940920 kcal Electronic energy + Delta-G solvation = -26185.862369 eV Core-core repulsion = 21418.466466 eV Total energy + Delta-G solvation = -4767.395902 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -51.32392 -50.25848 -48.84424 -48.78327 -41.92421 -41.11707 -39.25552 -35.12195 -34.36188 -33.40032 -32.84590 -30.62801 -27.98976 -27.37623 -25.38985 -24.85160 -23.88953 -22.91050 -20.65078 -20.03862 -19.78678 -19.70320 -18.91369 -18.59503 -17.89861 -17.49489 -17.34649 -17.10005 -16.79991 -16.13594 -15.80105 -15.68741 -15.58969 -15.53618 -15.21345 -15.08243 -14.93366 -14.92363 -14.82074 -14.76012 -14.39563 -14.14942 -14.08652 -13.41976 -13.33623 -12.61839 -12.58310 -11.95933 -11.86548 -11.63132 -11.28938 -10.92127 -10.66612 -10.61857 -10.51843 -9.26771 -9.03476 -6.34070 -0.87731 -0.59838 0.22415 0.52051 1.13507 1.52237 1.62198 1.79771 1.98402 2.06786 2.27668 2.44859 2.58999 2.77986 2.99386 3.07442 3.18626 3.20789 3.40290 3.52612 3.61404 3.85556 3.88567 4.06650 4.10630 4.31647 4.37689 4.72874 4.76777 4.98945 5.11448 5.14787 5.39695 5.53426 6.00772 6.08625 6.68957 6.84010 7.39338 8.40175 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.022356 B = 0.002630 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.155561 B =10645.277914 C =11716.566099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.034 4.034 3 Si 1.142 2.858 4 H -0.278 1.278 5 H -0.257 1.257 6 H -0.257 1.257 7 C -0.489 4.489 8 H 0.104 0.896 9 O -0.221 6.221 10 C 0.093 3.907 11 C -0.199 4.199 12 C -0.074 4.074 13 C 0.036 3.964 14 C 0.062 3.938 15 C -0.143 4.143 16 C 0.318 3.682 17 F -0.100 7.100 18 N -0.505 5.505 19 C 0.066 3.934 20 C 0.532 3.468 21 F -0.169 7.169 22 F -0.167 7.167 23 F -0.163 7.163 24 C -0.110 4.110 25 N -0.428 5.428 26 C 0.033 3.967 27 H 0.267 0.733 28 H 0.148 0.852 29 H 0.176 0.824 30 H 0.194 0.806 31 H 0.166 0.834 32 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.763 -14.011 -0.952 18.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.233 4.233 3 Si 0.957 3.043 4 H -0.203 1.203 5 H -0.181 1.181 6 H -0.182 1.182 7 C -0.564 4.564 8 H 0.122 0.878 9 O -0.124 6.124 10 C 0.037 3.963 11 C -0.225 4.225 12 C -0.094 4.094 13 C -0.098 4.098 14 C 0.053 3.947 15 C -0.165 4.165 16 C 0.163 3.837 17 F -0.079 7.079 18 N -0.220 5.220 19 C -0.071 4.071 20 C 0.476 3.524 21 F -0.150 7.150 22 F -0.148 7.148 23 F -0.144 7.144 24 C -0.131 4.131 25 N -0.137 5.137 26 C -0.131 4.131 27 H 0.075 0.925 28 H 0.166 0.834 29 H 0.193 0.807 30 H 0.211 0.789 31 H 0.184 0.816 32 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 11.369 -13.907 -1.075 17.995 hybrid contribution -0.126 -0.525 0.138 0.557 sum 11.243 -14.432 -0.937 18.319 Atomic orbital electron populations 1.70711 1.07972 1.30773 1.44201 1.28389 0.96731 1.04921 0.93271 0.82611 0.73878 0.68734 0.79052 1.20308 1.18133 1.18154 1.22749 0.94246 0.82264 1.57167 0.87829 1.83642 1.36787 1.13059 1.78938 1.20920 0.92460 0.88495 0.94378 1.21733 0.92915 1.00657 1.07166 1.22109 1.02376 0.90100 0.94793 1.19112 0.89366 0.91677 1.09680 1.18491 0.91776 0.91227 0.93177 1.22227 0.93728 0.99478 1.01049 1.17632 0.78838 0.88746 0.98483 1.91682 1.26164 1.96777 1.93268 1.66197 1.08993 1.31781 1.15068 1.20398 0.89135 0.93240 1.04359 1.17632 0.76808 0.83579 0.74360 1.93249 1.94826 1.94092 1.32854 1.93230 1.74419 1.62621 1.84540 1.93251 1.44224 1.96340 1.80582 1.22035 1.03416 0.90425 0.97244 1.67298 1.07737 1.29417 1.09257 1.21905 1.00451 0.84781 1.05915 0.92462 0.83423 0.80725 0.78937 0.81599 0.81996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.31 13.70 21.61 0.30 -51.02 16 2 C -0.03 -1.74 5.49 84.84 0.47 -1.27 16 3 Si 1.14 42.19 29.92 68.60 2.05 44.24 16 4 H -0.28 -10.51 7.11 99.48 0.71 -9.81 16 5 H -0.26 -8.50 7.11 99.48 0.71 -7.79 16 6 H -0.26 -8.51 7.11 99.48 0.71 -7.80 16 7 C -0.49 -24.70 9.50 67.92 0.64 -24.05 16 8 H 0.10 4.67 5.25 -2.91 -0.02 4.66 16 9 O -0.22 -11.27 9.16 -21.85 -0.20 -11.47 16 10 C 0.09 3.87 6.67 22.74 0.15 4.02 16 11 C -0.20 -6.91 9.25 22.55 0.21 -6.71 16 12 C -0.07 -1.98 9.47 22.55 0.21 -1.77 16 13 C 0.04 1.04 6.74 41.98 0.28 1.32 16 14 C 0.06 1.45 5.91 -19.85 -0.12 1.33 16 15 C -0.14 -2.65 9.46 22.64 0.21 -2.44 16 16 C 0.32 6.79 8.40 84.67 0.71 7.50 16 17 F -0.10 -2.04 17.29 44.97 0.78 -1.26 16 18 N -0.50 -12.55 9.96 -185.21 -1.84 -14.40 16 19 C 0.07 1.57 6.29 42.47 0.27 1.84 16 20 C 0.53 12.01 3.43 71.24 0.24 12.25 16 21 F -0.17 -3.85 17.30 44.97 0.78 -3.07 16 22 F -0.17 -3.95 17.03 44.97 0.77 -3.19 16 23 F -0.16 -3.54 16.43 44.97 0.74 -2.80 16 24 C -0.11 -2.61 8.97 22.59 0.20 -2.40 16 25 N -0.43 -14.19 9.51 -184.30 -1.75 -15.94 16 26 C 0.03 1.22 11.14 84.91 0.95 2.16 16 27 H 0.27 15.67 7.97 -92.71 -0.74 14.93 16 28 H 0.15 5.00 5.75 -2.91 -0.02 4.99 16 29 H 0.18 2.94 6.27 -2.91 -0.02 2.92 16 30 H 0.19 2.23 6.31 -2.91 -0.02 2.21 16 31 H 0.17 3.90 7.16 -2.91 -0.02 3.88 16 32 H 0.16 5.67 8.06 -2.91 -0.02 5.65 16 Total: -1.00 -60.60 309.12 7.32 -53.28 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 1.27 Total: 13.83 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 4.44 Total: -8.21 kcal Atomic # 7 Polarization: -78.06 SS G_CDS: -3.30 Total: -81.36 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: -0.20 Total: -11.47 kcal Atomic # 9 Polarization: -13.38 SS G_CDS: 3.06 Total: -10.32 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.05 Total: 44.24 kcal Total: -60.60 7.32 -53.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243910946.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.659 kcal (2) G-P(sol) polarization free energy of solvation -60.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds