Wall clock time and date at job start Tue Mar 31 2020 15:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30692 * 1 3 3 Si 1.86803 * 120.00427 * 2 1 4 4 H 1.48501 * 109.47277 * 270.00569 * 3 2 1 5 5 H 1.48507 * 109.46696 * 29.99908 * 3 2 1 6 6 H 1.48497 * 109.47326 * 149.99775 * 3 2 1 7 7 C 1.40152 * 119.99951 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00120 * 180.02562 * 7 2 1 9 9 C 1.40725 * 119.99755 * 359.97438 * 7 2 1 10 10 N 1.33988 * 120.29527 * 10.21672 * 9 7 2 11 11 C 1.31596 * 119.90479 * 180.02562 * 10 9 7 12 12 C 1.39204 * 120.52458 * 0.02562 * 11 10 9 13 13 N 1.31995 * 120.59557 * 359.69482 * 12 11 10 14 14 C 1.32924 * 120.07511 * 0.55717 * 13 12 11 15 15 C 1.47629 * 120.25810 * 179.74279 * 14 13 12 16 16 C 1.39821 * 120.09061 * 224.03647 * 15 14 13 17 17 C 1.37739 * 119.94628 * 180.27732 * 16 15 14 18 18 C 1.38953 * 120.11861 * 359.76548 * 17 16 15 19 19 O 1.35811 * 119.91294 * 179.97438 * 18 17 16 20 20 C 1.42899 * 116.99804 * 359.97438 * 19 18 17 21 21 F 1.39902 * 109.47010 * 60.00269 * 20 19 18 22 22 F 1.39902 * 109.47130 * 179.97438 * 20 19 18 23 23 F 1.39895 * 109.47579 * 299.99833 * 20 19 18 24 24 C 1.39201 * 120.17802 * 359.97438 * 18 17 16 25 25 F 1.35103 * 119.97513 * 180.02562 * 24 18 17 26 26 C 1.37901 * 120.05539 * 359.97438 * 24 18 17 27 27 H 0.97006 * 120.00215 * 359.97438 * 1 2 3 28 28 H 1.08006 * 119.73850 * 179.97438 * 11 10 9 29 29 H 1.07994 * 119.70598 * 179.97438 * 12 11 10 30 30 H 1.07998 * 120.03179 * 0.02562 * 16 15 14 31 31 H 1.08003 * 119.94487 * 179.74628 * 17 16 15 32 32 H 1.07995 * 120.06051 * 180.02562 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2411 1.6177 0.0000 4 1 2.4885 2.0465 -1.4001 5 1 1.4385 2.6527 0.7001 6 1 3.5386 1.4401 0.7001 7 6 2.0077 -1.2138 -0.0005 8 1 3.0876 -1.2138 -0.0001 9 6 1.3040 -2.4324 -0.0005 10 7 -0.0201 -2.4484 -0.2052 11 6 -0.6705 -3.5924 -0.2031 12 6 0.0060 -4.7900 0.0109 13 7 1.3109 -4.7983 0.2092 14 6 1.9908 -3.6561 0.2170 15 6 3.4495 -3.6602 0.4440 16 6 4.0272 -2.7246 1.3077 17 6 5.3892 -2.7274 1.5129 18 6 6.1897 -3.6616 0.8669 19 8 7.5323 -3.6603 1.0719 20 6 8.0515 -2.6711 1.9629 21 9 7.4782 -2.8362 3.2283 22 9 9.4401 -2.8124 2.0585 23 9 7.7446 -1.3965 1.4746 24 6 5.6193 -4.5988 0.0102 25 9 6.4014 -5.5056 -0.6153 26 6 4.2564 -4.6032 -0.1997 27 1 -0.4851 0.8401 0.0004 28 1 -1.7379 -3.6021 -0.3680 29 1 -0.5410 -5.7211 0.0103 30 1 3.4065 -1.9976 1.8103 31 1 5.8359 -2.0021 2.1768 32 1 3.8137 -5.3306 -0.8640 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243921248.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:32 Heat of formation + Delta-G solvation = -171.167348 kcal Electronic energy + Delta-G solvation = -27445.069720 eV Core-core repulsion = 22677.403819 eV Total energy + Delta-G solvation = -4767.665901 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.46076 -48.62873 -48.19858 -48.03450 -39.96961 -39.15406 -37.25816 -34.36465 -32.49830 -31.37477 -30.51261 -28.78284 -26.43708 -25.95379 -23.56908 -22.76655 -22.07935 -21.21248 -19.68511 -19.16486 -19.01031 -17.88881 -17.20778 -16.73698 -16.10523 -15.81915 -15.68934 -15.14303 -14.96499 -14.92585 -14.87207 -14.55308 -14.49242 -14.31808 -14.27345 -13.96234 -13.90559 -13.36841 -13.19430 -13.07547 -12.63414 -12.33824 -11.86483 -11.68847 -11.52287 -11.48938 -10.98318 -10.76670 -10.43781 -10.03095 -9.77310 -9.38570 -8.75954 -8.39414 -7.78743 -7.56682 -6.79674 -4.93705 1.18427 1.43717 1.48843 2.31652 2.76158 2.82145 2.89680 2.92209 3.01405 3.65693 3.76556 3.80433 4.02502 4.28636 4.40562 4.87943 4.97227 5.15068 5.50113 5.52790 5.62794 5.77459 5.88418 6.09593 6.15543 6.36917 6.39525 6.47786 6.66442 6.75047 6.79291 7.01487 7.17635 7.42084 7.78466 8.12525 8.38284 8.97464 9.57143 9.84762 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.012467 B = 0.004758 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.315749 B = 5883.615461 C = 7619.544694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.700 5.700 2 C 0.065 3.935 3 Si 0.909 3.091 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.254 1.254 7 C -0.402 4.402 8 H 0.101 0.899 9 C 0.224 3.776 10 N -0.450 5.450 11 C 0.094 3.906 12 C -0.112 4.112 13 N -0.406 5.406 14 C -0.046 4.046 15 C 0.050 3.950 16 C -0.074 4.074 17 C -0.164 4.164 18 C 0.040 3.960 19 O -0.307 6.307 20 C 0.603 3.397 21 F -0.166 7.166 22 F -0.136 7.136 23 F -0.164 7.164 24 C 0.097 3.903 25 F -0.135 7.135 26 C -0.114 4.114 27 H 0.282 0.718 28 H 0.133 0.867 29 H 0.132 0.868 30 H 0.151 0.849 31 H 0.137 0.863 32 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.409 -0.603 3.019 9.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.319 5.319 2 C -0.163 4.163 3 Si 0.732 3.268 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.177 1.177 7 C -0.431 4.431 8 H 0.119 0.881 9 C 0.100 3.900 10 N -0.166 5.166 11 C -0.078 4.078 12 C -0.275 4.275 13 N -0.118 5.118 14 C -0.191 4.191 15 C 0.048 3.952 16 C -0.093 4.093 17 C -0.182 4.182 18 C -0.003 4.003 19 O -0.227 6.227 20 C 0.513 3.487 21 F -0.148 7.148 22 F -0.117 7.117 23 F -0.146 7.146 24 C 0.077 3.923 25 F -0.114 7.114 26 C -0.134 4.134 27 H 0.094 0.906 28 H 0.151 0.849 29 H 0.149 0.851 30 H 0.169 0.831 31 H 0.155 0.845 32 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 9.384 -0.533 2.936 9.847 hybrid contribution 0.424 0.731 0.052 0.847 sum 9.807 0.199 2.988 10.254 Atomic orbital electron populations 1.70017 1.07553 1.29158 1.25171 1.26222 0.95030 1.01715 0.93377 0.86255 0.80722 0.79905 0.79967 1.18827 1.19638 1.17735 1.19901 0.95294 0.89070 1.38859 0.88129 1.19180 0.88975 0.92098 0.89740 1.69546 1.07450 1.24726 1.14928 1.23599 1.00061 0.90262 0.93900 1.22603 0.91104 0.98132 1.15640 1.67688 1.08450 1.29144 1.06536 1.19887 0.91867 0.90778 1.16548 1.18223 0.91739 0.92397 0.92852 1.21371 0.93042 0.98486 0.96435 1.21253 0.95152 0.99320 1.02507 1.18640 0.79091 1.00175 1.02415 1.86362 1.23384 1.51524 1.61445 1.19354 0.76166 0.76650 0.76570 1.93298 1.84615 1.94991 1.41857 1.93283 1.27162 1.95604 1.95697 1.93308 1.92765 1.40885 1.87670 1.16664 0.88384 0.90198 0.97063 1.91483 1.74308 1.64910 1.80652 1.21160 0.89277 1.01057 1.01879 0.90628 0.84913 0.85092 0.83110 0.84498 0.83647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -16.56 11.54 55.56 0.64 -15.92 16 2 C 0.07 1.46 5.49 -17.32 -0.10 1.36 16 3 Si 0.91 16.50 29.56 -169.99 -5.03 11.47 16 4 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 5 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16 6 H -0.25 -4.48 7.11 56.52 0.40 -4.07 16 7 C -0.40 -9.36 7.45 -37.92 -0.28 -9.65 16 8 H 0.10 2.18 5.37 -52.49 -0.28 1.90 16 9 C 0.22 5.52 6.51 -84.55 -0.55 4.97 16 10 N -0.45 -11.27 8.12 -10.72 -0.09 -11.36 16 11 C 0.09 2.06 11.21 -17.29 -0.19 1.86 16 12 C -0.11 -2.37 11.22 -17.12 -0.19 -2.56 16 13 N -0.41 -9.23 10.30 -8.99 -0.09 -9.33 16 14 C -0.05 -1.05 6.41 -82.12 -0.53 -1.58 16 15 C 0.05 1.00 5.28 -104.88 -0.55 0.44 16 16 C -0.07 -1.35 7.53 -39.17 -0.29 -1.64 16 17 C -0.16 -2.65 8.23 -39.50 -0.33 -2.97 16 18 C 0.04 0.66 6.50 -38.96 -0.25 0.41 16 19 O -0.31 -4.70 10.23 -19.15 -0.20 -4.90 16 20 C 0.60 7.84 3.42 101.05 0.35 8.19 16 21 F -0.17 -2.11 15.55 2.25 0.04 -2.07 16 22 F -0.14 -1.61 17.53 2.25 0.04 -1.57 16 23 F -0.16 -2.15 15.55 2.25 0.04 -2.11 16 24 C 0.10 1.68 7.30 -39.35 -0.29 1.40 16 25 F -0.13 -2.31 17.10 2.25 0.04 -2.27 16 26 C -0.11 -2.10 9.64 -39.12 -0.38 -2.47 16 27 H 0.28 6.00 8.29 -40.82 -0.34 5.67 16 28 H 0.13 2.45 8.06 -52.48 -0.42 2.02 16 29 H 0.13 2.35 8.06 -52.49 -0.42 1.92 16 30 H 0.15 2.75 6.75 -52.49 -0.35 2.39 16 31 H 0.14 1.94 5.07 -52.48 -0.27 1.68 16 32 H 0.15 2.61 8.06 -52.49 -0.42 2.19 16 LS Contribution 302.67 15.07 4.56 4.56 Total: -1.00 -25.95 302.67 -4.94 -30.89 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -1.30 Total: 4.85 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -3.59 Total: -2.24 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.46 Total: -36.60 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: -0.20 Total: -4.90 kcal Atomic # 9 Polarization: -8.18 SS G_CDS: 0.15 Total: -8.03 kcal Atomic # 14 Polarization: 16.50 SS G_CDS: -5.03 Total: 11.47 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -25.95 -4.94 -30.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243921248.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.281 kcal (2) G-P(sol) polarization free energy of solvation -25.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds