Wall clock time and date at job start Tue Mar 31 2020 15:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30692 * 1 3 3 Si 1.86803 * 120.00427 * 2 1 4 4 H 1.48501 * 109.47277 * 270.00569 * 3 2 1 5 5 H 1.48507 * 109.46696 * 29.99908 * 3 2 1 6 6 H 1.48497 * 109.47326 * 149.99775 * 3 2 1 7 7 C 1.40152 * 119.99951 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00120 * 180.02562 * 7 2 1 9 9 C 1.40725 * 119.99755 * 359.97438 * 7 2 1 10 10 N 1.33988 * 120.29527 * 10.21672 * 9 7 2 11 11 C 1.31596 * 119.90479 * 180.02562 * 10 9 7 12 12 C 1.39204 * 120.52458 * 0.02562 * 11 10 9 13 13 N 1.31995 * 120.59557 * 359.69482 * 12 11 10 14 14 C 1.32924 * 120.07511 * 0.55717 * 13 12 11 15 15 C 1.47629 * 120.25810 * 179.74279 * 14 13 12 16 16 C 1.39821 * 120.09061 * 224.03647 * 15 14 13 17 17 C 1.37739 * 119.94628 * 180.27732 * 16 15 14 18 18 C 1.38953 * 120.11861 * 359.76548 * 17 16 15 19 19 O 1.35811 * 119.91294 * 179.97438 * 18 17 16 20 20 C 1.42899 * 116.99804 * 359.97438 * 19 18 17 21 21 F 1.39902 * 109.47010 * 60.00269 * 20 19 18 22 22 F 1.39902 * 109.47130 * 179.97438 * 20 19 18 23 23 F 1.39895 * 109.47579 * 299.99833 * 20 19 18 24 24 C 1.39201 * 120.17802 * 359.97438 * 18 17 16 25 25 F 1.35103 * 119.97513 * 180.02562 * 24 18 17 26 26 C 1.37901 * 120.05539 * 359.97438 * 24 18 17 27 27 H 0.97006 * 120.00215 * 359.97438 * 1 2 3 28 28 H 1.08006 * 119.73850 * 179.97438 * 11 10 9 29 29 H 1.07994 * 119.70598 * 179.97438 * 12 11 10 30 30 H 1.07998 * 120.03179 * 0.02562 * 16 15 14 31 31 H 1.08003 * 119.94487 * 179.74628 * 17 16 15 32 32 H 1.07995 * 120.06051 * 180.02562 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2411 1.6177 0.0000 4 1 2.4885 2.0465 -1.4001 5 1 1.4385 2.6527 0.7001 6 1 3.5386 1.4401 0.7001 7 6 2.0077 -1.2138 -0.0005 8 1 3.0876 -1.2138 -0.0001 9 6 1.3040 -2.4324 -0.0005 10 7 -0.0201 -2.4484 -0.2052 11 6 -0.6705 -3.5924 -0.2031 12 6 0.0060 -4.7900 0.0109 13 7 1.3109 -4.7983 0.2092 14 6 1.9908 -3.6561 0.2170 15 6 3.4495 -3.6602 0.4440 16 6 4.0272 -2.7246 1.3077 17 6 5.3892 -2.7274 1.5129 18 6 6.1897 -3.6616 0.8669 19 8 7.5323 -3.6603 1.0719 20 6 8.0515 -2.6711 1.9629 21 9 7.4782 -2.8362 3.2283 22 9 9.4401 -2.8124 2.0585 23 9 7.7446 -1.3965 1.4746 24 6 5.6193 -4.5988 0.0102 25 9 6.4014 -5.5056 -0.6153 26 6 4.2564 -4.6032 -0.1997 27 1 -0.4851 0.8401 0.0004 28 1 -1.7379 -3.6021 -0.3680 29 1 -0.5410 -5.7211 0.0103 30 1 3.4065 -1.9976 1.8103 31 1 5.8359 -2.0021 2.1768 32 1 3.8137 -5.3306 -0.8640 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243921248.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:31 Heat of formation + Delta-G solvation = -184.900570 kcal Electronic energy + Delta-G solvation = -27445.665237 eV Core-core repulsion = 22677.403819 eV Total energy + Delta-G solvation = -4768.261418 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.49379 -50.00377 -49.20494 -49.07542 -41.38395 -40.71271 -38.66191 -36.04405 -34.16626 -32.99298 -31.92433 -30.28887 -28.09283 -27.18562 -25.03755 -24.24177 -23.67349 -22.71128 -20.90570 -20.21451 -20.13723 -19.58214 -18.60050 -18.17709 -17.61171 -17.18745 -17.02694 -16.73271 -16.49352 -16.03363 -15.99449 -15.84248 -15.64200 -15.50789 -15.36460 -15.17148 -15.10849 -14.89559 -14.61148 -14.52378 -14.07417 -13.82236 -13.41410 -13.25458 -13.00973 -12.95588 -12.38435 -12.26250 -11.98069 -11.68284 -11.51678 -11.06613 -10.21770 -9.90817 -9.46209 -9.17112 -8.46254 -6.66871 -0.26528 0.03707 0.34966 0.66819 1.10123 1.41650 1.52148 1.56167 1.71331 2.16051 2.40015 2.69710 2.73859 2.92064 2.93001 3.50005 3.55325 3.66728 3.87246 4.12376 4.16336 4.20759 4.38954 4.48353 4.68984 4.81370 4.95561 5.04601 5.07209 5.15231 5.19448 5.52091 5.74241 5.77734 6.08712 6.43098 6.66615 7.26538 7.85345 8.22833 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.012467 B = 0.004758 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.315749 B = 5883.615461 C = 7619.544694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.738 5.738 2 C 0.027 3.973 3 Si 0.977 3.023 4 H -0.264 1.264 5 H -0.266 1.266 6 H -0.242 1.242 7 C -0.420 4.420 8 H 0.111 0.889 9 C 0.195 3.805 10 N -0.487 5.487 11 C 0.083 3.917 12 C -0.115 4.115 13 N -0.422 5.422 14 C -0.054 4.054 15 C 0.025 3.975 16 C -0.072 4.072 17 C -0.153 4.153 18 C 0.053 3.947 19 O -0.313 6.313 20 C 0.609 3.391 21 F -0.161 7.161 22 F -0.126 7.126 23 F -0.162 7.162 24 C 0.093 3.907 25 F -0.133 7.133 26 C -0.111 4.111 27 H 0.288 0.712 28 H 0.162 0.838 29 H 0.164 0.836 30 H 0.148 0.852 31 H 0.161 0.839 32 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.047 -0.014 3.566 11.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.358 5.358 2 C -0.198 4.198 3 Si 0.796 3.204 4 H -0.189 1.189 5 H -0.190 1.190 6 H -0.165 1.165 7 C -0.450 4.450 8 H 0.128 0.872 9 C 0.071 3.929 10 N -0.203 5.203 11 C -0.088 4.088 12 C -0.277 4.277 13 N -0.135 5.135 14 C -0.199 4.199 15 C 0.023 3.977 16 C -0.092 4.092 17 C -0.171 4.171 18 C 0.010 3.990 19 O -0.233 6.233 20 C 0.519 3.481 21 F -0.143 7.143 22 F -0.107 7.107 23 F -0.144 7.144 24 C 0.073 3.927 25 F -0.112 7.112 26 C -0.131 4.131 27 H 0.099 0.901 28 H 0.179 0.821 29 H 0.181 0.819 30 H 0.165 0.835 31 H 0.178 0.822 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 11.024 0.027 3.489 11.563 hybrid contribution -0.030 0.436 -0.099 0.448 sum 10.994 0.463 3.390 11.515 Atomic orbital electron populations 1.70091 1.09131 1.30366 1.26215 1.27071 0.95655 1.04695 0.92361 0.85251 0.79802 0.75527 0.79849 1.18909 1.19014 1.16473 1.20198 0.95875 0.89415 1.39501 0.87166 1.19602 0.89363 0.93343 0.90597 1.69502 1.08135 1.26328 1.16375 1.24089 1.01430 0.89908 0.93390 1.23132 0.90936 0.99280 1.14329 1.67767 1.09204 1.29235 1.07288 1.20232 0.93309 0.90424 1.15936 1.18213 0.90651 0.94087 0.94713 1.21332 0.93829 0.97903 0.96097 1.21397 0.94176 0.99345 1.02223 1.18633 0.79786 0.99333 1.01286 1.86353 1.22464 1.52447 1.62057 1.19227 0.76437 0.76211 0.76255 1.93313 1.84613 1.94942 1.41447 1.93314 1.26318 1.95515 1.95591 1.93319 1.92787 1.40576 1.87670 1.16603 0.88045 0.90580 0.97423 1.91487 1.74107 1.64894 1.80666 1.21076 0.89722 1.00598 1.01658 0.90060 0.82118 0.81915 0.83477 0.82205 0.83809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -35.47 11.54 21.86 0.25 -35.21 16 2 C 0.03 1.22 5.49 85.33 0.47 1.69 16 3 Si 0.98 33.17 29.56 68.60 2.03 35.20 16 4 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 5 H -0.27 -8.68 7.11 99.48 0.71 -7.97 16 6 H -0.24 -7.66 7.11 99.48 0.71 -6.95 16 7 C -0.42 -19.79 7.45 23.34 0.17 -19.62 16 8 H 0.11 4.77 5.37 -2.91 -0.02 4.75 16 9 C 0.20 9.81 6.51 40.35 0.26 10.07 16 10 N -0.49 -24.86 8.12 -187.83 -1.52 -26.38 16 11 C 0.08 3.64 11.21 84.96 0.95 4.59 16 12 C -0.11 -4.81 11.22 84.90 0.95 -3.86 16 13 N -0.42 -19.32 10.30 -182.35 -1.88 -21.19 16 14 C -0.05 -2.52 6.41 42.39 0.27 -2.25 16 15 C 0.03 1.01 5.28 -20.03 -0.11 0.90 16 16 C -0.07 -2.57 7.53 22.53 0.17 -2.40 16 17 C -0.15 -4.62 8.23 22.32 0.18 -4.43 16 18 C 0.05 1.65 6.50 22.67 0.15 1.80 16 19 O -0.31 -8.77 10.23 -91.43 -0.93 -9.71 16 20 C 0.61 14.06 3.42 113.37 0.39 14.45 16 21 F -0.16 -3.62 15.55 44.97 0.70 -2.92 16 22 F -0.13 -2.63 17.53 44.97 0.79 -1.85 16 23 F -0.16 -3.72 15.55 44.97 0.70 -3.02 16 24 C 0.09 3.12 7.30 22.42 0.16 3.29 16 25 F -0.13 -4.36 17.10 44.97 0.77 -3.59 16 26 C -0.11 -4.03 9.64 22.57 0.22 -3.81 16 27 H 0.29 12.44 8.29 -92.70 -0.77 11.67 16 28 H 0.16 5.85 8.06 -2.91 -0.02 5.83 16 29 H 0.16 5.59 8.06 -2.91 -0.02 5.57 16 30 H 0.15 5.31 6.75 -2.91 -0.02 5.29 16 31 H 0.16 4.05 5.07 -2.91 -0.01 4.04 16 32 H 0.14 5.19 8.06 -2.91 -0.02 5.16 16 Total: -1.00 -55.52 302.67 6.38 -49.14 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 1.23 Total: 19.14 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: 4.25 Total: 0.41 kcal Atomic # 7 Polarization: -79.64 SS G_CDS: -3.15 Total: -82.79 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -0.93 Total: -9.71 kcal Atomic # 9 Polarization: -14.34 SS G_CDS: 2.96 Total: -11.39 kcal Atomic # 14 Polarization: 33.17 SS G_CDS: 2.03 Total: 35.20 kcal Total: -55.52 6.38 -49.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243921248.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.757 kcal (2) G-P(sol) polarization free energy of solvation -55.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds