Wall clock time and date at job start Tue Mar 31 2020 15:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30684 * 1 3 3 Si 1.86805 * 119.99751 * 2 1 4 4 H 1.48497 * 109.47322 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47165 * 120.00136 * 3 2 1 6 6 H 1.48501 * 109.47099 * 239.99962 * 3 2 1 7 7 C 1.40108 * 120.00168 * 180.27361 * 2 1 3 8 8 H 1.08001 * 120.00319 * 179.97438 * 7 2 1 9 9 C 1.40992 * 119.99760 * 0.02562 * 7 2 1 10 10 N 1.33680 * 119.13206 * 359.72268 * 9 7 2 11 11 C 1.31550 * 120.83841 * 179.75493 * 10 9 7 12 12 C 1.40508 * 119.08592 * 0.51564 * 11 10 9 13 13 C 1.47796 * 120.79468 * 179.72138 * 12 11 10 14 14 C 1.39784 * 120.08221 * 179.74934 * 13 12 11 15 15 C 1.37760 * 119.94861 * 179.72386 * 14 13 12 16 16 C 1.38944 * 120.11415 * 0.54479 * 15 14 13 17 17 O 1.35831 * 119.91999 * 179.70173 * 16 15 14 18 18 C 1.42907 * 116.99666 * 0.02562 * 17 16 15 19 19 F 1.39902 * 109.47000 * 60.00201 * 18 17 16 20 20 F 1.39900 * 109.46893 * 179.97438 * 18 17 16 21 21 F 1.39896 * 109.47269 * 300.00242 * 18 17 16 22 22 C 1.39207 * 120.16853 * 359.73062 * 16 15 14 23 23 F 1.35100 * 119.97740 * 180.02562 * 22 16 15 24 24 C 1.37916 * 120.04744 * 359.97438 * 22 16 15 25 25 C 1.40505 * 118.41159 * 359.74476 * 12 11 10 26 26 N 1.31555 * 119.08535 * 359.97438 * 25 12 11 27 27 H 0.97005 * 120.00035 * 359.72380 * 1 2 3 28 28 H 1.07995 * 120.45925 * 180.23534 * 11 10 9 29 29 H 1.08007 * 120.02850 * 359.97383 * 14 13 12 30 30 H 1.08004 * 119.94038 * 180.27347 * 15 14 13 31 31 H 1.07998 * 120.05923 * 180.02562 * 24 22 16 32 32 H 1.08000 * 120.46422 * 180.02562 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 1.2758 2.7465 0.0006 5 1 3.0946 1.6965 1.2125 6 1 3.0945 1.6965 -1.2125 7 6 2.0074 -1.2133 -0.0058 8 1 3.0874 -1.2134 -0.0062 9 6 1.3024 -2.4343 -0.0122 10 7 -0.0342 -2.4141 -0.0069 11 6 -0.7256 -3.5332 -0.0174 12 6 -0.0400 -4.7596 -0.0233 13 6 -0.7790 -6.0396 -0.0289 14 6 -0.0818 -7.2511 -0.0400 15 6 -0.7734 -8.4426 -0.0395 16 6 -2.1628 -8.4421 -0.0394 17 8 -2.8407 -9.6192 -0.0450 18 6 -2.0610 -10.8168 -0.0503 19 9 -1.2542 -10.8530 1.0922 20 9 -2.9119 -11.9272 -0.0550 21 9 -1.2534 -10.8426 -1.1923 22 6 -2.8620 -7.2384 -0.0342 23 9 -4.2130 -7.2425 -0.0336 24 6 -2.1766 -6.0417 -0.0285 25 6 1.3649 -4.7402 -0.0232 26 7 1.9884 -3.5818 -0.0181 27 1 -0.4850 0.8401 0.0040 28 1 -1.8053 -3.5097 -0.0170 29 1 0.9982 -7.2532 -0.0449 30 1 -0.2345 -9.3786 -0.0436 31 1 -2.7188 -5.1077 -0.0241 32 1 1.9253 -5.6634 -0.0280 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243923570.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:35 Heat of formation + Delta-G solvation = -169.498396 kcal Electronic energy + Delta-G solvation = -26485.691756 eV Core-core repulsion = 21718.098227 eV Total energy + Delta-G solvation = -4767.593529 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.56458 -48.76549 -48.29672 -48.14559 -40.03344 -39.16029 -37.44141 -34.19130 -32.26538 -31.80639 -30.60308 -29.02393 -26.76381 -25.54632 -23.81482 -23.08928 -21.95648 -21.23933 -19.82013 -19.27163 -19.09425 -18.21718 -17.23305 -16.82616 -16.28446 -15.83418 -15.72457 -15.46593 -15.04819 -14.97753 -14.80115 -14.62281 -14.59862 -14.38086 -14.17308 -14.06168 -13.98184 -13.45907 -13.31191 -12.93894 -12.83430 -12.37513 -12.04962 -11.91380 -11.59355 -11.42888 -11.13243 -10.97073 -10.55508 -9.83920 -9.46431 -9.44673 -9.09302 -8.75972 -7.60176 -7.54312 -6.87266 -5.01232 0.98378 1.25404 1.40440 2.38742 2.72123 2.77080 2.87784 2.90576 2.93205 3.63565 3.66840 3.72413 3.91962 4.16221 4.40764 4.69490 4.86539 5.21148 5.30476 5.32821 5.54386 5.64730 5.69093 5.89981 6.02795 6.10638 6.25082 6.33648 6.41650 6.64933 6.80125 7.00316 7.12174 7.34718 7.81731 8.14209 8.22526 8.80004 9.76370 9.95537 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.033478 B = 0.002529 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.179195 B =11067.038197 C =11728.722154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.688 5.688 2 C 0.056 3.944 3 Si 0.926 3.074 4 H -0.273 1.273 5 H -0.260 1.260 6 H -0.259 1.259 7 C -0.360 4.360 8 H 0.100 0.900 9 C 0.374 3.626 10 N -0.507 5.507 11 C 0.189 3.811 12 C -0.342 4.342 13 C 0.063 3.937 14 C -0.123 4.123 15 C -0.142 4.142 16 C 0.013 3.987 17 O -0.307 6.307 18 C 0.603 3.397 19 F -0.166 7.166 20 F -0.136 7.136 21 F -0.166 7.166 22 C 0.119 3.881 23 F -0.133 7.133 24 C -0.156 4.156 25 C 0.197 3.803 26 N -0.591 5.591 27 H 0.283 0.717 28 H 0.134 0.866 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.147 0.853 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.466 -12.892 -0.078 13.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.307 5.307 2 C -0.174 4.174 3 Si 0.748 3.252 4 H -0.197 1.197 5 H -0.184 1.184 6 H -0.184 1.184 7 C -0.392 4.392 8 H 0.118 0.882 9 C 0.144 3.856 10 N -0.223 5.223 11 C 0.010 3.990 12 C -0.352 4.352 13 C 0.060 3.940 14 C -0.141 4.141 15 C -0.161 4.161 16 C -0.030 4.030 17 O -0.227 6.227 18 C 0.513 3.487 19 F -0.148 7.148 20 F -0.117 7.117 21 F -0.148 7.148 22 C 0.099 3.901 23 F -0.112 7.112 24 C -0.175 4.175 25 C 0.020 3.980 26 N -0.309 5.309 27 H 0.095 0.905 28 H 0.151 0.849 29 H 0.154 0.846 30 H 0.152 0.848 31 H 0.164 0.836 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.279 -11.686 -0.070 12.137 hybrid contribution -0.348 -0.658 -0.006 0.745 sum -3.627 -12.344 -0.076 12.866 Atomic orbital electron populations 1.70106 1.07561 1.29276 1.23735 1.26296 0.95230 1.02031 0.93823 0.86059 0.79949 0.78677 0.80486 1.19727 1.18377 1.18362 1.19593 0.95357 0.87902 1.36369 0.88242 1.19953 0.86009 0.90898 0.88743 1.69360 1.08038 1.26744 1.18138 1.23088 0.99145 0.87813 0.88930 1.19581 0.95270 0.92545 1.27813 1.18569 0.91045 0.92877 0.91480 1.21016 1.00466 0.90327 1.02306 1.21196 0.90777 1.00452 1.03652 1.18510 0.91264 0.81716 1.11488 1.86369 1.34560 1.11801 1.89970 1.19354 0.74912 0.79727 0.74743 1.93296 1.73787 1.96234 1.51533 1.93287 1.71590 1.50490 1.96341 1.93294 1.73731 1.96246 1.51565 1.16685 0.76676 0.90845 1.05874 1.91495 1.28380 1.97220 1.94103 1.21026 0.94451 0.95914 1.06116 1.22710 0.90297 0.95960 0.89017 1.68673 1.40668 0.98434 1.23081 0.90530 0.84915 0.84614 0.84759 0.83563 0.84793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -16.45 11.40 55.55 0.63 -15.82 16 2 C 0.06 1.28 5.50 -17.34 -0.10 1.19 16 3 Si 0.93 16.69 29.56 -169.99 -5.02 11.66 16 4 H -0.27 -4.75 7.11 56.52 0.40 -4.35 16 5 H -0.26 -4.63 7.11 56.52 0.40 -4.23 16 6 H -0.26 -4.63 7.11 56.52 0.40 -4.23 16 7 C -0.36 -8.99 9.35 -37.84 -0.35 -9.34 16 8 H 0.10 2.35 7.85 -52.49 -0.41 1.94 16 9 C 0.37 9.72 7.35 -158.14 -1.16 8.56 16 10 N -0.51 -12.89 7.82 -12.41 -0.10 -12.99 16 11 C 0.19 4.11 10.70 -16.82 -0.18 3.93 16 12 C -0.34 -6.80 5.94 -104.28 -0.62 -7.42 16 13 C 0.06 1.05 5.88 -104.84 -0.62 0.43 16 14 C -0.12 -1.78 9.45 -39.18 -0.37 -2.15 16 15 C -0.14 -1.95 8.23 -39.49 -0.33 -2.27 16 16 C 0.01 0.19 6.50 -38.96 -0.25 -0.06 16 17 O -0.31 -4.30 10.23 -19.21 -0.20 -4.49 16 18 C 0.60 7.03 3.42 101.05 0.35 7.37 16 19 F -0.17 -1.89 15.55 2.25 0.04 -1.86 16 20 F -0.14 -1.47 17.53 2.25 0.04 -1.43 16 21 F -0.17 -1.89 15.55 2.25 0.04 -1.86 16 22 C 0.12 1.85 7.30 -39.34 -0.29 1.56 16 23 F -0.13 -2.10 17.10 2.25 0.04 -2.06 16 24 C -0.16 -2.45 9.42 -39.13 -0.37 -2.82 16 25 C 0.20 4.07 10.70 -16.82 -0.18 3.89 16 26 N -0.59 -14.35 10.34 -12.40 -0.13 -14.48 16 27 H 0.28 6.04 8.29 -40.82 -0.34 5.70 16 28 H 0.13 2.50 6.33 -52.49 -0.33 2.17 16 29 H 0.14 1.73 6.28 -52.48 -0.33 1.40 16 30 H 0.13 1.59 5.07 -52.48 -0.27 1.32 16 31 H 0.15 2.14 6.28 -52.49 -0.33 1.81 16 32 H 0.13 2.25 6.33 -52.49 -0.33 1.92 16 LS Contribution 302.57 15.07 4.56 4.56 Total: -1.00 -26.73 302.57 -5.71 -32.43 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -1.14 Total: 3.45 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -4.47 Total: 2.87 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: 0.41 Total: -43.28 kcal Atomic # 8 Polarization: -4.30 SS G_CDS: -0.20 Total: -4.49 kcal Atomic # 9 Polarization: -7.35 SS G_CDS: 0.15 Total: -7.20 kcal Atomic # 14 Polarization: 16.69 SS G_CDS: -5.02 Total: 11.66 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -26.73 -5.71 -32.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243923570.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.066 kcal (2) G-P(sol) polarization free energy of solvation -26.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds