Wall clock time and date at job start Tue Mar 31 2020 15:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30684 * 1 3 3 Si 1.86805 * 119.99751 * 2 1 4 4 H 1.48497 * 109.47322 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47165 * 120.00136 * 3 2 1 6 6 H 1.48501 * 109.47099 * 239.99962 * 3 2 1 7 7 C 1.40108 * 120.00168 * 180.27361 * 2 1 3 8 8 H 1.08001 * 120.00319 * 179.97438 * 7 2 1 9 9 C 1.40992 * 119.99760 * 0.02562 * 7 2 1 10 10 N 1.33680 * 119.13206 * 359.72268 * 9 7 2 11 11 C 1.31550 * 120.83841 * 179.75493 * 10 9 7 12 12 C 1.40508 * 119.08592 * 0.51564 * 11 10 9 13 13 C 1.47796 * 120.79468 * 179.72138 * 12 11 10 14 14 C 1.39784 * 120.08221 * 179.74934 * 13 12 11 15 15 C 1.37760 * 119.94861 * 179.72386 * 14 13 12 16 16 C 1.38944 * 120.11415 * 0.54479 * 15 14 13 17 17 O 1.35831 * 119.91999 * 179.70173 * 16 15 14 18 18 C 1.42907 * 116.99666 * 0.02562 * 17 16 15 19 19 F 1.39902 * 109.47000 * 60.00201 * 18 17 16 20 20 F 1.39900 * 109.46893 * 179.97438 * 18 17 16 21 21 F 1.39896 * 109.47269 * 300.00242 * 18 17 16 22 22 C 1.39207 * 120.16853 * 359.73062 * 16 15 14 23 23 F 1.35100 * 119.97740 * 180.02562 * 22 16 15 24 24 C 1.37916 * 120.04744 * 359.97438 * 22 16 15 25 25 C 1.40505 * 118.41159 * 359.74476 * 12 11 10 26 26 N 1.31555 * 119.08535 * 359.97438 * 25 12 11 27 27 H 0.97005 * 120.00035 * 359.72380 * 1 2 3 28 28 H 1.07995 * 120.45925 * 180.23534 * 11 10 9 29 29 H 1.08007 * 120.02850 * 359.97383 * 14 13 12 30 30 H 1.08004 * 119.94038 * 180.27347 * 15 14 13 31 31 H 1.07998 * 120.05923 * 180.02562 * 24 22 16 32 32 H 1.08000 * 120.46422 * 180.02562 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 1.2758 2.7465 0.0006 5 1 3.0946 1.6965 1.2125 6 1 3.0945 1.6965 -1.2125 7 6 2.0074 -1.2133 -0.0058 8 1 3.0874 -1.2134 -0.0062 9 6 1.3024 -2.4343 -0.0122 10 7 -0.0342 -2.4141 -0.0069 11 6 -0.7256 -3.5332 -0.0174 12 6 -0.0400 -4.7596 -0.0233 13 6 -0.7790 -6.0396 -0.0289 14 6 -0.0818 -7.2511 -0.0400 15 6 -0.7734 -8.4426 -0.0395 16 6 -2.1628 -8.4421 -0.0394 17 8 -2.8407 -9.6192 -0.0450 18 6 -2.0610 -10.8168 -0.0503 19 9 -1.2542 -10.8530 1.0922 20 9 -2.9119 -11.9272 -0.0550 21 9 -1.2534 -10.8426 -1.1923 22 6 -2.8620 -7.2384 -0.0342 23 9 -4.2130 -7.2425 -0.0336 24 6 -2.1766 -6.0417 -0.0285 25 6 1.3649 -4.7402 -0.0232 26 7 1.9884 -3.5818 -0.0181 27 1 -0.4850 0.8401 0.0040 28 1 -1.8053 -3.5097 -0.0170 29 1 0.9982 -7.2532 -0.0449 30 1 -0.2345 -9.3786 -0.0436 31 1 -2.7188 -5.1077 -0.0241 32 1 1.9253 -5.6634 -0.0280 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243923570.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:35 Heat of formation + Delta-G solvation = -183.521845 kcal Electronic energy + Delta-G solvation = -26486.299859 eV Core-core repulsion = 21718.098227 eV Total energy + Delta-G solvation = -4768.201632 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -51.49439 -50.00032 -49.20881 -49.07603 -41.32503 -40.71006 -38.72862 -35.83994 -33.94915 -33.34129 -31.85403 -30.52322 -28.18391 -26.77642 -25.29144 -24.50843 -23.36679 -22.68228 -20.91796 -20.21542 -20.11650 -19.88652 -18.49515 -18.18776 -17.68210 -17.03288 -17.02790 -16.99387 -16.25251 -16.03302 -15.98863 -15.74855 -15.51310 -15.47066 -15.35835 -15.11344 -15.09494 -15.03287 -14.63556 -14.47084 -14.15587 -13.75225 -13.39954 -13.25130 -13.12768 -12.85665 -12.73684 -12.32996 -11.99748 -11.40509 -11.22483 -11.12138 -10.53814 -10.01826 -9.33544 -9.02852 -8.53776 -6.77684 -0.35530 0.04366 0.37905 0.84046 1.06775 1.40297 1.52820 1.54549 1.72459 2.16193 2.41602 2.70317 2.78306 2.94193 2.95696 3.53544 3.62305 3.87944 3.91242 3.91816 3.94788 4.16001 4.28475 4.33670 4.66203 4.73574 4.93749 5.02193 5.05722 5.16032 5.21547 5.62595 5.67828 5.81264 6.04976 6.41863 6.49568 7.10144 8.11785 8.24782 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.033478 B = 0.002529 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.179195 B =11067.038197 C =11728.722154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.729 5.729 2 C 0.019 3.981 3 Si 1.001 2.999 4 H -0.262 1.262 5 H -0.256 1.256 6 H -0.256 1.256 7 C -0.407 4.407 8 H 0.097 0.903 9 C 0.351 3.649 10 N -0.542 5.542 11 C 0.168 3.832 12 C -0.323 4.323 13 C 0.039 3.961 14 C -0.105 4.105 15 C -0.140 4.140 16 C 0.028 3.972 17 O -0.317 6.317 18 C 0.609 3.391 19 F -0.161 7.161 20 F -0.129 7.129 21 F -0.161 7.161 22 C 0.103 3.897 23 F -0.136 7.136 24 C -0.146 4.146 25 C 0.184 3.816 26 N -0.618 5.618 27 H 0.290 0.710 28 H 0.154 0.846 29 H 0.159 0.841 30 H 0.159 0.841 31 H 0.151 0.849 32 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.405 -14.855 -0.092 15.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.349 5.349 2 C -0.206 4.206 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.180 1.180 6 H -0.180 1.180 7 C -0.440 4.440 8 H 0.115 0.885 9 C 0.118 3.882 10 N -0.258 5.258 11 C -0.008 4.008 12 C -0.333 4.333 13 C 0.036 3.964 14 C -0.123 4.123 15 C -0.158 4.158 16 C -0.015 4.015 17 O -0.238 6.238 18 C 0.519 3.481 19 F -0.143 7.143 20 F -0.110 7.110 21 F -0.143 7.143 22 C 0.084 3.916 23 F -0.115 7.115 24 C -0.165 4.165 25 C 0.010 3.990 26 N -0.337 5.337 27 H 0.101 0.899 28 H 0.171 0.829 29 H 0.176 0.824 30 H 0.176 0.824 31 H 0.169 0.831 32 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -3.259 -13.739 -0.084 14.121 hybrid contribution -0.557 -0.522 -0.004 0.763 sum -3.816 -14.261 -0.088 14.763 Atomic orbital electron populations 1.70166 1.09046 1.30483 1.25215 1.27174 0.95958 1.04903 0.92580 0.84963 0.78543 0.74103 0.80420 1.18569 1.18019 1.18024 1.19856 0.95513 0.89022 1.39595 0.88483 1.20333 0.86615 0.91891 0.89323 1.69327 1.08191 1.28481 1.19823 1.23564 1.00264 0.88089 0.88876 1.19778 0.95278 0.93297 1.24898 1.18438 0.91313 0.92273 0.94338 1.21256 1.01625 0.89558 0.99860 1.21419 0.90284 1.01149 1.02942 1.18689 0.91757 0.81910 1.09171 1.86362 1.35436 1.12202 1.89752 1.19224 0.74895 0.79116 0.74890 1.93311 1.73559 1.96156 1.51324 1.93311 1.71480 1.49910 1.96315 1.93310 1.73502 1.96170 1.51352 1.16727 0.76712 0.91166 1.07044 1.91491 1.28525 1.97236 1.94227 1.21087 0.94275 0.96458 1.04674 1.23371 0.91099 0.96359 0.88165 1.68695 1.41292 0.99144 1.24526 0.89901 0.82868 0.82381 0.82373 0.83102 0.80880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -36.23 11.40 21.85 0.25 -35.99 16 2 C 0.02 0.92 5.50 85.32 0.47 1.39 16 3 Si 1.00 34.92 29.56 68.60 2.03 36.95 16 4 H -0.26 -8.51 7.11 99.48 0.71 -7.81 16 5 H -0.26 -8.67 7.11 99.48 0.71 -7.96 16 6 H -0.26 -8.68 7.11 99.48 0.71 -7.97 16 7 C -0.41 -21.27 9.35 23.40 0.22 -21.05 16 8 H 0.10 4.84 7.85 -2.91 -0.02 4.82 16 9 C 0.35 18.95 7.35 134.86 0.99 19.94 16 10 N -0.54 -28.53 7.82 -193.16 -1.51 -30.04 16 11 C 0.17 7.41 10.70 85.29 0.91 8.33 16 12 C -0.32 -12.58 5.94 -19.64 -0.12 -12.70 16 13 C 0.04 1.20 5.88 -20.01 -0.12 1.08 16 14 C -0.10 -2.67 9.45 22.53 0.21 -2.46 16 15 C -0.14 -3.28 8.23 22.33 0.18 -3.10 16 16 C 0.03 0.74 6.50 22.67 0.15 0.88 16 17 O -0.32 -7.93 10.23 -91.66 -0.94 -8.86 16 18 C 0.61 12.18 3.42 113.37 0.39 12.57 16 19 F -0.16 -3.10 15.55 44.97 0.70 -2.40 16 20 F -0.13 -2.42 17.53 44.97 0.79 -1.63 16 21 F -0.16 -3.09 15.55 44.97 0.70 -2.39 16 22 C 0.10 2.98 7.30 22.43 0.16 3.14 16 23 F -0.14 -4.05 17.10 44.97 0.77 -3.28 16 24 C -0.15 -4.32 9.42 22.56 0.21 -4.11 16 25 C 0.18 7.46 10.70 85.29 0.91 8.38 16 26 N -0.62 -30.59 10.34 -193.16 -2.00 -32.59 16 27 H 0.29 12.79 8.29 -92.70 -0.77 12.02 16 28 H 0.15 5.83 6.33 -2.91 -0.02 5.81 16 29 H 0.16 3.32 6.28 -2.91 -0.02 3.30 16 30 H 0.16 3.00 5.07 -2.91 -0.01 2.99 16 31 H 0.15 4.25 6.28 -2.91 -0.02 4.23 16 32 H 0.17 5.37 6.33 -2.91 -0.02 5.35 16 Total: -1.00 -59.76 302.57 6.61 -53.15 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 1.24 Total: 14.77 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: 4.58 Total: 12.31 kcal Atomic # 7 Polarization: -95.36 SS G_CDS: -3.26 Total: -98.61 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: -0.94 Total: -8.86 kcal Atomic # 9 Polarization: -12.66 SS G_CDS: 2.96 Total: -9.70 kcal Atomic # 14 Polarization: 34.92 SS G_CDS: 2.03 Total: 36.95 kcal Total: -59.76 6.61 -53.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243923570.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.371 kcal (2) G-P(sol) polarization free energy of solvation -59.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds