Wall clock time and date at job start Tue Mar 31 2020 15:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30665 * 1 3 3 Si 1.86804 * 120.00105 * 2 1 4 4 H 1.48498 * 109.47109 * 85.01294 * 3 2 1 5 5 H 1.48500 * 109.47103 * 205.01740 * 3 2 1 6 6 H 1.48498 * 109.46909 * 325.01614 * 3 2 1 7 7 C 1.40131 * 119.99885 * 179.72285 * 2 1 3 8 8 H 1.08003 * 119.99768 * 187.34262 * 7 2 1 9 9 C 1.41052 * 119.99896 * 7.33993 * 7 2 1 10 10 N 1.33655 * 119.13409 * 7.07658 * 9 7 2 11 11 C 1.31574 * 120.83411 * 179.71413 * 10 9 7 12 12 C 1.40463 * 119.08881 * 0.54413 * 11 10 9 13 13 C 1.47882 * 120.79135 * 179.74744 * 12 11 10 14 14 C 1.39747 * 120.13284 * 129.97862 * 13 12 11 15 15 C 1.37864 * 119.97191 * 180.02562 * 14 13 12 16 16 C 1.38439 * 120.25602 * 359.97438 * 15 14 13 17 17 C 1.38730 * 120.28114 * 0.02562 * 16 15 14 18 18 O 1.35960 * 119.99002 * 180.02562 * 17 16 15 19 19 C 1.42899 * 117.00088 * 359.97438 * 18 17 16 20 20 F 1.39894 * 109.47279 * 59.99929 * 19 18 17 21 21 F 1.39904 * 109.46851 * 180.02562 * 19 18 17 22 22 F 1.39904 * 109.47023 * 300.00070 * 19 18 17 23 23 C 1.38691 * 120.01840 * 359.72236 * 17 16 15 24 24 F 1.35097 * 120.12935 * 180.29425 * 23 17 16 25 25 C 1.40458 * 118.41618 * 359.73192 * 12 11 10 26 26 N 1.31576 * 119.09076 * 359.97438 * 25 12 11 27 27 H 0.97005 * 119.99812 * 359.97438 * 1 2 3 28 28 H 1.07995 * 120.45686 * 180.26980 * 11 10 9 29 29 H 1.08000 * 120.01739 * 0.02562 * 14 13 12 30 30 H 1.07999 * 119.87368 * 179.97438 * 15 14 13 31 31 H 1.08004 * 119.85618 * 180.02562 * 16 15 14 32 32 H 1.08003 * 120.45580 * 179.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3828 2.1073 1.3948 5 1 3.5869 1.4120 -0.5921 6 1 1.4948 2.6199 -0.8027 7 6 2.0073 -1.2136 0.0059 8 1 3.0807 -1.2168 0.1254 9 6 1.3106 -2.4308 -0.1443 10 7 0.0060 -2.4025 -0.4331 11 6 -0.6752 -3.5178 -0.5860 12 6 -0.0153 -4.7479 -0.4302 13 6 -0.7455 -6.0241 -0.5880 14 6 -0.2347 -7.0268 -1.4167 15 6 -0.9185 -8.2151 -1.5618 16 6 -2.1109 -8.4205 -0.8890 17 6 -2.6276 -7.4323 -0.0637 18 8 -3.7987 -7.6405 0.5947 19 6 -4.4433 -8.8992 0.3898 20 9 -3.5927 -9.9311 0.8005 21 9 -5.6260 -8.9444 1.1358 22 9 -4.7427 -9.0543 -0.9680 23 6 -1.9466 -6.2345 0.0948 24 9 -2.4447 -5.2730 0.9026 25 6 1.3549 -4.7369 -0.1212 26 7 1.9716 -3.5822 0.0108 27 1 -0.4850 0.8401 0.0004 28 1 -1.7283 -3.4878 -0.8235 29 1 0.6953 -6.8710 -1.9431 30 1 -0.5226 -8.9887 -2.2029 31 1 -2.6410 -9.3540 -1.0071 32 1 1.8948 -5.6636 0.0062 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245176178.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:15 Heat of formation + Delta-G solvation = -184.951211 kcal Electronic energy + Delta-G solvation = -26866.764395 eV Core-core repulsion = 22098.500782 eV Total energy + Delta-G solvation = -4768.263614 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.058 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -51.52368 -49.90435 -49.23754 -49.09966 -41.25528 -40.76413 -38.71383 -35.85857 -33.91566 -33.54735 -31.33857 -30.72753 -28.05749 -27.09571 -24.88890 -24.55443 -23.57688 -22.82471 -20.68195 -20.25039 -20.17044 -19.83653 -18.49417 -18.23645 -17.66330 -17.20810 -17.03143 -16.80541 -16.27415 -16.08994 -16.01935 -15.75472 -15.70444 -15.53998 -15.37990 -15.12274 -15.02840 -14.94343 -14.70018 -14.52119 -14.11695 -13.86593 -13.17362 -13.05958 -12.90424 -12.87784 -12.74022 -12.58160 -11.98446 -11.37281 -11.22884 -11.12455 -10.48859 -9.63297 -9.53092 -9.21470 -8.58809 -6.80710 -0.18555 0.02891 0.33257 0.71938 1.01734 1.39202 1.49231 1.57119 1.67473 2.16322 2.42201 2.66421 2.68192 2.91126 3.04365 3.59372 3.73948 3.80239 3.92841 3.96384 4.01086 4.08886 4.25253 4.32974 4.74463 4.89487 4.94794 5.02927 5.17283 5.20543 5.27863 5.44398 5.68862 5.83021 6.05846 6.42072 6.50499 7.07043 8.10602 8.25267 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.028426 B = 0.002820 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.783860 B = 9925.323032 C =10557.509041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.740 5.740 2 C 0.022 3.978 3 Si 1.004 2.996 4 H -0.258 1.258 5 H -0.252 1.252 6 H -0.262 1.262 7 C -0.417 4.417 8 H 0.098 0.902 9 C 0.357 3.643 10 N -0.544 5.544 11 C 0.173 3.827 12 C -0.326 4.326 13 C 0.009 3.991 14 C -0.107 4.107 15 C -0.062 4.062 16 C -0.178 4.178 17 C 0.066 3.934 18 O -0.325 6.325 19 C 0.611 3.389 20 F -0.158 7.158 21 F -0.130 7.130 22 F -0.159 7.159 23 C 0.056 3.944 24 F -0.147 7.147 25 C 0.190 3.810 26 N -0.616 5.616 27 H 0.290 0.710 28 H 0.134 0.866 29 H 0.156 0.844 30 H 0.183 0.817 31 H 0.160 0.840 32 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.982 -16.648 -3.221 17.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.361 5.361 2 C -0.203 4.203 3 Si 0.822 3.178 4 H -0.183 1.183 5 H -0.175 1.175 6 H -0.186 1.186 7 C -0.450 4.450 8 H 0.116 0.884 9 C 0.124 3.876 10 N -0.261 5.261 11 C -0.002 4.002 12 C -0.336 4.336 13 C 0.006 3.994 14 C -0.125 4.125 15 C -0.080 4.080 16 C -0.197 4.197 17 C 0.023 3.977 18 O -0.245 6.245 19 C 0.521 3.479 20 F -0.140 7.140 21 F -0.111 7.111 22 F -0.141 7.141 23 C 0.036 3.964 24 F -0.125 7.125 25 C 0.016 3.984 26 N -0.335 5.335 27 H 0.101 0.899 28 H 0.151 0.849 29 H 0.173 0.827 30 H 0.200 0.800 31 H 0.177 0.823 32 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -5.767 -15.373 -2.929 16.678 hybrid contribution -0.928 -0.065 0.348 0.993 sum -6.695 -15.438 -2.582 17.024 Atomic orbital electron populations 1.70119 1.09354 1.30523 1.26062 1.27205 0.95829 1.05091 0.92168 0.84876 0.78979 0.74223 0.79731 1.18274 1.17521 1.18615 1.19823 0.95960 0.89067 1.40193 0.88417 1.20334 0.86488 0.91940 0.88867 1.69220 1.08783 1.28530 1.19586 1.23237 0.98794 0.88348 0.89826 1.19678 0.96766 0.92868 1.24253 1.18534 0.91127 0.94308 0.95391 1.21530 1.01558 0.92149 0.97291 1.21345 0.92235 0.97219 0.97190 1.21672 1.00047 0.98518 0.99422 1.18640 0.85467 0.95403 0.98152 1.86430 1.36416 1.34165 1.67508 1.19184 0.76647 0.77307 0.74805 1.93307 1.70799 1.59606 1.90316 1.93313 1.45333 1.95632 1.76854 1.93310 1.93260 1.95114 1.32384 1.17380 0.95923 0.85429 0.97679 1.91458 1.87151 1.62626 1.71305 1.23269 0.90217 0.96454 0.88454 1.68707 1.40465 0.99060 1.25274 0.89937 0.84864 0.82666 0.80006 0.82292 0.80945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -39.01 11.51 21.85 0.25 -38.76 16 2 C 0.02 1.09 5.47 85.33 0.47 1.56 16 3 Si 1.00 36.59 29.57 68.60 2.03 38.62 16 4 H -0.26 -9.01 7.11 99.48 0.71 -8.30 16 5 H -0.25 -8.87 7.11 99.48 0.71 -8.16 16 6 H -0.26 -9.01 7.11 99.48 0.71 -8.30 16 7 C -0.42 -22.77 9.34 23.42 0.22 -22.55 16 8 H 0.10 5.08 7.86 -2.91 -0.02 5.06 16 9 C 0.36 20.31 7.33 134.89 0.99 21.30 16 10 N -0.54 -30.81 7.93 -193.17 -1.53 -32.34 16 11 C 0.17 8.55 10.20 85.27 0.87 9.42 16 12 C -0.33 -13.89 5.35 -19.64 -0.11 -13.99 16 13 C 0.01 0.30 5.52 -19.99 -0.11 0.19 16 14 C -0.11 -2.58 9.55 22.55 0.22 -2.37 16 15 C -0.06 -1.12 10.02 22.23 0.22 -0.89 16 16 C -0.18 -3.73 8.26 22.44 0.19 -3.55 16 17 C 0.07 1.89 6.48 22.50 0.15 2.03 16 18 O -0.32 -9.04 10.24 -93.10 -0.95 -9.99 16 19 C 0.61 12.77 3.42 113.37 0.39 13.15 16 20 F -0.16 -2.98 15.56 44.97 0.70 -2.28 16 21 F -0.13 -2.65 17.53 44.97 0.79 -1.86 16 22 F -0.16 -3.01 15.56 44.97 0.70 -2.31 16 23 C 0.06 1.95 7.20 22.74 0.16 2.11 16 24 F -0.15 -6.04 15.85 44.97 0.71 -5.33 16 25 C 0.19 8.20 10.85 85.27 0.93 9.12 16 26 N -0.62 -32.03 10.34 -193.16 -2.00 -34.02 16 27 H 0.29 13.55 8.29 -92.70 -0.77 12.78 16 28 H 0.13 6.20 7.88 -2.91 -0.02 6.17 16 29 H 0.16 3.21 8.06 -2.91 -0.02 3.18 16 30 H 0.18 1.66 8.06 -2.91 -0.02 1.63 16 31 H 0.16 2.57 5.07 -2.91 -0.01 2.55 16 32 H 0.17 5.84 8.06 -2.91 -0.02 5.81 16 Total: -1.00 -66.81 307.68 6.49 -60.31 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 1.22 Total: 12.43 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: 4.57 Total: 15.54 kcal Atomic # 7 Polarization: -101.85 SS G_CDS: -3.28 Total: -105.12 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: -0.95 Total: -9.99 kcal Atomic # 9 Polarization: -14.69 SS G_CDS: 2.90 Total: -11.79 kcal Atomic # 14 Polarization: 36.59 SS G_CDS: 2.03 Total: 38.62 kcal Total: -66.81 6.49 -60.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245176178.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.637 kcal (2) G-P(sol) polarization free energy of solvation -66.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds